Contig 011643:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF048I06Sequence451011643 (2)emb|CCA66009.1|5e-46hypothetical protein [Beta vulgaris subsp. vulgaris]161020254
JMFS109B06Sequence627011643 (2)ref|XP_009124282.1|1e-56PREDICTED: putative ribonuclease H protein At1g65750 [Brassica rapa]

Alignment

This contig is upended


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JMFS109B06+                                                                TCAAGGC
                      ____________________________________________________________
consensus                                                                  TCAAGGC
 
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JMFS109B06+           GGCCGTCGATTCTGTTAAGAATGGGAGTGAACAAGTTTGAATTCACCCTTCCATGAATCG
                      ____________________________________________________________
consensus             GGCCGTCGATTCTGTTAAGAATGGGAGTGAACAAGTTTGAATTCACCCTTCCATGAATCG
 
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JMFS109B06+           TAGGAACCCCAAGGTACCTCCCAAGATTCGTTGTGGTAGGCATGCCAGCAATCTGTGTGA
                      ____________________________________________________________
consensus             TAGGAACCCCAAGGTACCTCCCAAGATTCGTTGTGGTAGGCATGCCAGCAATCTGTGTGA
 
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JMFS109B06+           TTCTTTGCACTTCCTCCATCTTCACATTTTTGGAGAAGAAAATATGTGATTTCTTCAAGC
                      ____________________________________________________________
consensus             TTCTTTGCACTTCCTCCATCTTCACATTTTTGGAGAAGAAAATATGTGATTTCTTCAAGC
 
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JMFS109B06+           TTACCCTTGCCCCGAAGCTGTGCTAAACTTGTCGAGGCATCTCCTTATCACCATTATTTG
                      ____________________________________________________________
consensus             TTACCCTTGCCCCGAAGCTGTGCTAAACTTGTCGAGGCATCTCCTTATCACCATTATTTG
 
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JMFS109B06+           ATCCTGTGTGGCCTCAGCAAAGAGAACTAAATCGTCAGCAAAGAAAAGATGAGTAAGGTT
                      ____________________________________________________________
consensus             ATCCTGTGTGGCCTCAGCAAAGAGAACTAAATCGTCAGCAAAGAAAAGATGAGTAAGGTT
 
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JMFS109B06+           AGGGCCGTACCTGGATGGACGCACTCCTTTCCAATTTCCTTGCCGCACTTCCTCGGAGAT
JMFF048I06+                                        TCCAATTTCCTTGCCGCACTTCCTCGGAGAT
                      ____________________________________________________________
consensus             AGGGCCGTACCTGGATGGACGCACTCCTTTCCAATTTCCTTGCCGCACTTCCTCGGAGAT
 
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JMFS109B06+           GATGTGACTTAGTCGCTCCATGCACATAACGAAAATATAAGGCGATATTGAATCTCCTTG
JMFF048I06+           GATGTGACTTAGTCGCTCCATGCACATAACGAAAATATAAGGCGATATTGAATCTCCTTG
                      ____________________________________________________________
consensus             GATGTGACTTAGTCGCTCCATGCACATAACGAAAATATAAGGCGATATTGAATCTCCTTG
 
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JMFS109B06+           CCGAATGCCTCGAGTTGGAATGATTTTGTCCAGCTGTTTTCCATTCCAAAGAATATTCAA
JMFF048I06+           CCGAATGCCTCGAGTTGGAATGATTTTGTCCAGCTGTTTTCCATTCCAAAGAATATTCAA
                      ____________________________________________________________
consensus             CCGAATGCCTCGAGTTGGAATGATTTTGTCCAGCTGTTTTCCATTCCAAAGAATATTCAA
 
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JMFS109B06+           AGTAGTGGAATCAACACATTTCATGACATTTCCTGTCCATTTTTCATTAAAACCCACCTC
JMFF048I06+           AGTAGTGGAATCAACACATTTCATGACATTTCCTGTCCATTTTTCATTAAAACCCACCTC
                      ____________________________________________________________
consensus             AGTAGTGGAATCAACACATTTCATGACATTTCCTGTCCATTTTTCATTAAAACCCACCTC
 
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JMFS109B06+           CTTAAGAGTATCGCGGATAAAATTCCAATCAAGTCTGTCGTACGCTTTCTCCAAGTCGAT
JMFF048I06+           CTTAAGAGAATCGCGGATAAAATTCCAATCAAGTCTGTCGTACGCTTTCTCCAAGTCGAT
                      ____________________________________________________________
consensus             CTTAAGAGTATCGCGGATAAAATTCCAATCAAGTCTGTCGTACGCTTTCTCCAAGTCGAT
 
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JMFS109B06+           TTTAAGCACCATACATCCGG                                        
JMFF048I06+           TTTAAGCACCATACATCCGGTATTTCCTTGCTTGTGTCGCATAGAATGAAGCATTTCTTG
                      ____________________________________________________________
consensus             TTTAAGCACCATACATCCGGTATTTCCTTGCTTGTGTCGCATAGAATGAAGCATTTCTTG
 
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JMFF048I06+           ATAAACCAGAATATTATCTGTTATCTGGCGCCCCGGGACAAAGCTGCTCTGTGCCGTATA
                      ____________________________________________________________
consensus             ATAAACCAGAATATTATCTGTTATCTGGCGCCCCGGGACAAAGCTGCTCTGTGCCGTATA
 
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JMFF048I06+           GTCGATGCAGATTTCCTTCGTTATCCAAACATATCAAGTATCAAATAATAACGTGCCGGC
                      ____________________________________________________________
consensus             GTCGATGCAGATTTCCTTCGTTATCCAAACATATCAAGTATCAAATAATAACGTGCCGGC