Contig 011642:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF048G23Sequence564011642 (2)emb|CDP04658.1|3e-16unnamed protein product [Coffea canephora]606011642 (2)ref|XP_004237174.1|7e-47PREDICTED: pentatricopeptide repeat-containing protein At2g13600 [Solanum lycop

Alignment

This contig is upended


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rJMFF048G23-               GTCAGTAGTGAAACTCAATTGAATTCCTAGTCTTGTACAATATATTTGATGAAAT
                      ____________________________________________________________
consensus                  GTCAGTAGTGAAACTCAATTGAATTCCTAGTCTTGTACAATATATTTGATGAAAT
 
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rJMFF048G23-          GAACTGTTCAAATTGTAAAAATGAATCCAAATCATCTTCCTTACACAACTCATCACTATC
                      ____________________________________________________________
consensus             GAACTGTTCAAATTGTAAAAATGAATCCAAATCATCTTCCTTACACAACTCATCACTATC
 
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rJMFF048G23-          CAAATAATCTTCAAATCTAAAGAGTCTCATCAATCTCGTTAGAGTTTTTAACCAACAATA
                      ____________________________________________________________
consensus             CAAATAATCTTCAAATCTAAAGAGTCTCATCAATCTCGTTAGAGTTTTTAACCAACAATA
 
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rJMFF048G23-          TTTTTCCTCCTTATGTGGATGCCTTCTATCTTTAACCATGAAAACATGAACCTTGCTCTC
                      ____________________________________________________________
consensus             TTTTTCCTCCTTATGTGGATGCCTTCTATCTTTAACCATGAAAACATGAACCTTGCTCTC
 
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rJMFF048G23-          TATTTCGATCCAACCAGATTGCTTAAAAACATAGCGTTATCTCATTAGTTTGCATATTCT
                      ____________________________________________________________
consensus             TATTTCGATCCAACCAGATTGCTTAAAAACATAGCGTTATCTCATTAGTTTGCATATTCT
 
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rJMFF048G23-          TGCTACATCTTTCCCGTGCTCGAGCTGAGCATACATGTTTGAGAGAAGAACGTAAGGACC
                      ____________________________________________________________
consensus             TGCTACATCTTTCCCGTGCTCGAGCTGAGCATACATGTTTGAGAGAAGAACGTAAGGACC
 
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rJMFF048G23-          CGAGTTTTCAGAATCAACCTCCAAAAGCTTCTCAGCTACATGCTTACCCAACTCCAACTC
                      ____________________________________________________________
consensus             CGAGTTTTCAGAATCAACCTCCAAAAGCTTCTCAGCTACATGCTTACCCAACTCCAACTC
 
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rJMFF048G23-          CATATCACAATGAGTTTTACAAGCAGAAAGCAAAGATCCCCACACAACACCATTTGGAGA
JMFF048G23+                                               TCCCCACACAACACCATTTGGAGA
                      ____________________________________________________________
consensus             CATATCACAATGAGTTTTACAAGCAGAAAGCAAAGATCCCCACACAACACCATTTGGAGA
 
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rJMFF048G23-          CATTGGCATTGATTCTTCAATCAAATTCCTTGCTTCGTCTAGGC-ACCGGCTCT-CCAAG
JMFF048G23+           CATTGGCATTGATTCTTCAATCAAATTCCTTGCTTCGTCTAGGCAACCGGCTCTACCAAG
                      ____________________________________________________________
consensus             CATTGGCATTGATTCTTCAATCAAATTCCTTGCTTCGTCTAGGCAACCGGCTCTACCAAG
 
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rJMFF048G23-          TATATCTACCATGCATGTGTAATGGTCTTTCAAAGGTTCCAAATCATATTCCCTCATAGA
JMFF048G23+           TATATCTACCATGCATGTGTAATGGTCTTTCAAAGGTTCCAAATCATATTCCCTCATAGA
                      ____________________________________________________________
consensus             TATATCTACCATGCATGTGTAATGGTCTTTCAAAGGTTCCAAATCATATTCCCTCATAGA
 
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rJMFF048G23-          ATAAAA                                                      
JMFF048G23+           ATAAAAATATATCTACCATGCATGAGTTCCAAGTAAATGTGTTCTTCTCACGCATTTGAT
                      ____________________________________________________________
consensus             ATAAAAATATATCTACCATGCATGAGTTCCAAGTAAATGTGTTCTTCTCACGCATTTGAT
 
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JMFF048G23+           CATTCCGGGCGTCTAGTAACCGCCAACATTTCCCGTACGCATCTATGAGCCGGTTGTTGA
                      ____________________________________________________________
consensus             CATTCCGGGCGTCTAGTAACCGCCAACATTTCCCGTACGCATCTATGAGCCGGTTGTTGA
 
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JMFF048G23+           TGAAGACCTCGCGACTGAAATAATTTTTCAGGATCCTCCCGTGTAGTGCACGAACGGCCA
                      ____________________________________________________________
consensus             TGAAGACCTCGCGACTGAAATAATTTTTCAGGATCCTCCCGTGTAGTGCACGAACGGCCA
 
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JMFF048G23+           ATGATAACTGGGTACAAATGTGGCCAAGAGTAGAACGAAGCTTTGGTTAGATTCCAGGTT
                      ____________________________________________________________
consensus             ATGATAACTGGGTACAAATGTGGCCAAGAGTAGAACGAAGCTTTGGTTAGATTCCAGGTT
 
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JMFF048G23+           TTCATGGTGGGATGGCGGAGTGCAGAGTGGGGGCTGAAACGAAGGCAGGCATTCATCGAG
                      ____________________________________________________________
consensus             TTCATGGTGGGATGGCGGAGTGCAGAGTGGGGGCTGAAACGAAGGCAGGCATTCATCGAG
 
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JMFF048G23+           GTGGGAGTAACCCAGTCGCTATGGCCCTTCATTGCGATCGGAGTGGTGGTGAAGGCGGAG
                      ____________________________________________________________
consensus             GTGGGAGTAACCCAGTCGCTATGGCCCTTCATTGCGATCGGAGTGGTGGTGAAGGCGGAG
 
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JMFF048G23+           GAGAGGCTTGGAACATCCGTAGCCCCAATATGCGAAGCTTATATAGCACTGTGAAACGAT
                      ____________________________________________________________
consensus             GAGAGGCTTGGAACATCCGTAGCCCCAATATGCGAAGCTTATATAGCACTGTGAAACGAT