Contig 011641:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF048G08Sequence396011641 (4)ref|XP_009770624.1|2e-42PREDICTED: blue copper protein-like [Nicotiana sylvestris]221011641 (4)
JMSF026H04Sequence706011641 (4)ref|XP_009770624.1|3e-48PREDICTED: blue copper protein-like [Nicotiana sylvestris]729011641 (4)ref|XP_009770624.1|3e-48PREDICTED: blue copper protein-like [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF026H04-                              CTCGATCATCATACATGCAAGGGGATGGAAAGACTCATCC
                      ____________________________________________________________
consensus                                 CTCGATCATCATACATGCAAGGGGATGGAAAGACTCATCC
 
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rJMSF026H04-          AAATTATAGATCAGATCGAGATGAAATGGTGAGATATGAAAATGGATAAATCACTGAATA
rJMFF048G08-                                                     GGATAAATCACTGAATA
JMSF026H04+               TATAGATCAGATCGAGATGAAATGGTGAGATATGAAAATGGATAAATCACTGAATA
                      ____________________________________________________________
consensus             AAATTATAGATCAGATCGAGATGAAATGGTGAGATATGAAAATGGATAAATCACTGAATA
 
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rJMSF026H04-          GAAAAGAAAACATATAATCATTACAAACACACAGCACTGCCTCTATCCTGACGATCAAAA
rJMFF048G08-          GAAAAGAAAACATATAATCATTACAAACACACAGCACTGCCTCTATCCTGACGATCAAAA
JMSF026H04+           GAAAAGAAAACATATAATCATTACAAACACACAGCACTGCCTCTATCCTGACGATCAAAA
                      ____________________________________________________________
consensus             GAAAAGAAAACATATAATCATTACAAACACACAGCACTGCCTCTATCCTGACGATCAAAA
 
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rJMSF026H04-          AGCCAAGAACACAATCATCATTACACCCACCCAACTCAGAAACGAAGAAGCCGCCGCTAA
rJMFF048G08-          AGCCAAGAACACAATCATCATTACACCCACCCAACTCAGAAACGAAGAAGCCGCCGCTAA
JMSF026H04+           AGCCAAGAACACAATCATCATTACACCCACCCAACTCAGAAACGAAGAAGCCGCCGCTAA
                      ____________________________________________________________
consensus             AGCCAAGAACACAATCATCATTACACCCACCCAACTCAGAAACGAAGAAGCCGCCGCTAA
 
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rJMSF026H04-          GGAAGACGACGACGGAGCCGGAACATCTTGCTTGGGAGCAGTCTTCGTCGACGGAGAACC
rJMFF048G08-          GGAAGACGACGACGGAGCCGGAACATCTTGCTTGGGAGCAGTCTTCGTCGACGGAGAACC
JMSF026H04+           GGAAGACGACGACGGAGCCGGAACATCTTGCTTGGGAGCAGTCTTCGTCGACGGAGAACC
                      ____________________________________________________________
consensus             GGAAGACGACGACGGAGCCGGAACATCTTGCTTGGGAGCAGTCTTCGTCGACGGAGAACC
 
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rJMSF026H04-          GCCGCCGGAGGCTGGCGGTGTGGAATCGCCGCCAGATGATCCCGCTGCTTCCACGTTGAC
rJMFF048G08-          GCCGCCGGAGGCTGGCGGTGTGGA                                    
JMSF026H04+           GCCGCCGGAGGCNGGCGGTGTGGAATCGCCGCCAGATGATCCCGCTGCTTCCACGTTGAC
                      ____________________________________________________________
consensus             GCCGCCGGAGGCTGGCGGTGTGGAATCGCCGCCAGATGATCCCGCTGCTTCCACGTTGAC
 
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rJMSF026H04-          CTCCAACTTCATGCCGCCGCTGCAATGGCCGGGGACGGAGCAGATGAAGTAGTGCTTCCC
JMSF026H04+           CTCCAACTTCATGCCGCCGCTGCAATGGCCGGGGACGGAGCAGATGAAGTAGTGCTTCCC
JMFF048G08+                                   ATGGCCGGGGACGGAGCAGATGAAGTAGTGCTTCCC
                      ____________________________________________________________
consensus             CTCCAACTTCATGCCGCCGCTGCAATGGCCGGGGACGGAGCAGATGAAGTAGTGCTTCCC
 
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rJMSF026H04-          GGCGGTCTTTAGAGGGATGGTGGTGGCGCCGCTGCTGTCTGTGCTGATGGAATTCGCCCC
JMSF026H04+           GGCGGTCTTTAGAGGGATGGTGGTGGCGCCGCTGCTGTCTGTGCTGATGGAATTCGCCCC
JMFF048G08+           GGCGGTCTTTAGAGGGATGGTGGTGGCGCCGCTGCTGTCTGTGCTGATGGAATTCGCCCC
                      ____________________________________________________________
consensus             GGCGGTCTTTAGAGGGATGGTGGTGGCGCCGCTGCTGTCTGTGCTGATGGAATTCGCCCC
 
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rJMSF026H04-          ACTGCATGACTTGTAGTCGCTCCCACTCACTTCATCCACCGTGTGTCCACTTGGATAATT
JMSF026H04+           ACTGCATGACTTGTAGTCGCTCCCACTCACTTCATCCACCGTGTGTCCACTTGGATAATT
JMFF048G08+           ACTGCATGACTTGTAGTCGATCCCACTCACTTCATCCACCGTGTGTCCACTTGGATAATT
                      ____________________________________________________________
consensus             ACTGCATGACTTGTAGTCGCTCCCACTCACTTCATCCACCGTGTGTCCACTTGGATAATT
 
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rJMSF026H04-          GAACACAAGAGAATCACCGACTTTGAAAGTCTTGCCACTAGCCCAACTTCCATAATCACC
JMSF026H04+           GAACACAAGAGAATCACCGACTTTGAAAGTCTTGCCACTAGCCCAACTTCCATAATCACC
JMFF048G08+           GAACACAAGAGAATCACCGACTTTGAAAGTCTTGCCACTAGCCCAACTTCCATAATCACC
                      ____________________________________________________________
consensus             GAACACAAGAGAATCACCGACTTTGAAAGTCTTGCCACTAGCCCAACTTCCATAATCACC
 
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rJMSF026H04-          GCTAAGTGCCCACCCTGAGGTGTCTCCGACAGTGTACTTTGTACCCAAACTTGGTACAAC
JMSF026H04+           GCTAAGTGCCCACCCTGAGGTGTCTCCGACAGTGTACTTTGTACCCAAACTTGGTACAAC
JMFF048G08+           GCTAAGTGCCCACCCTGAGGTGTCTCCGACAGTGTACTTTGTACCCAAACTTGGTACAAC
                      ____________________________________________________________
consensus             GCTAAGTGCCCACCCTGAGGTGTCTCCGACAGTGTACTTTGTACCCAAACTTGGTACAAC
 
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rJMSF026H04-          GTTGCACAATATACTAAGAATCAAAACTACATTTCCCACACCAAAGATTGCCATGTTTCG
JMSF026H04+           GTTGCACAATATACTAAGAATCAAAACTACATTTCCCACACCAAAGATTGCCATGTTTCG
JMFF048G08+           GTTGCACAATATACTAAGAATCAAAACTACATTTCCCACACCAAAGATTGCCATGTTTCG
                      ____________________________________________________________
consensus             GTTGCACAATATACTAAGAATCAAAACTACATTTCCCACACCAAAGATTGCCATGTTTCG
 
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rJMSF026H04-          TGTCTGTTGGAGATCAAGAGAGAGAGAAA                               
JMSF026H04+           TGTCTGTTGGAGATCAAGAGAGAGAGAAAGCTAAGAGAGATGGCTTGTT           
JMFF048G08+           TGTCTGTTGGAGATCAAGAGAGAGAGAAAGCTAAGAGAGATGGCTTGTTGAAGAGATGAT
                      ____________________________________________________________
consensus             TGTCTGTTGGAGATCAAGAGAGAGAGAAAGCTAAGAGAGATGGCTTGTTGAAGAGATGAT