| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF026C24 | Sequence | 520 | 011639 (7) | emb|CDP17136.1| | 9e-54 | unnamed protein product [Coffea canephora] | 707 | 012401 (6) | ref|XP_009591644.1| | 2e-83 | PREDICTED: phytochrome A-associated F-box protein [Nicotiana tomentosiformis] |
| JMFF041J14 | Sequence | 646 | 011639 (7) | emb|CDP17136.1| | 7e-52 | unnamed protein product [Coffea canephora] | 597 | 012401 (6) | ref|XP_009591644.1| | 6e-42 | PREDICTED: phytochrome A-associated F-box protein [Nicotiana tomentosiformis] |
| JMFF042C04 | Sequence | 649 | 011639 (7) | emb|CDP17136.1| | 2e-54 | unnamed protein product [Coffea canephora] | 589 | 012401 (6) | ref|XP_009591644.1| | 7e-52 | PREDICTED: phytochrome A-associated F-box protein [Nicotiana tomentosiformis] |
| JMFF048B23 | Sequence | 411 | 011639 (7) | emb|CDP17136.1| | 2e-38 | unnamed protein product [Coffea canephora] | 335 | 012401 (6) | |||
| JMFF050J17 | Sequence | 630 | 011639 (7) | emb|CDP17136.1| | 5e-55 | unnamed protein product [Coffea canephora] | 554 | 012401 (6) | ref|XP_009591644.1| | 5e-43 | PREDICTED: phytochrome A-associated F-box protein [Nicotiana tomentosiformis] |
| JMSF006D19 | Sequence | 337 | 011639 (7) | emb|CDP17136.1| | 2e-42 | unnamed protein product [Coffea canephora] | |||||
| JMSF012J22 | Sequence | 260 | 011639 (7) | emb|CDP17136.1| | 4e-23 | unnamed protein product [Coffea canephora] | |||||
This contig is upended
. : . : . : . : . : . :
JMFF050J17+ CAAGATCTGCNGATTTTCTTCTCTTAGATCCGACGACGGTTTTTCTTCTCTTAATAGTA
JMFF042C04+ TAGATCCGACGACGGTTTTTCTTCTCTTAATAGTA
____________________________________________________________
consensus CAAGATCTGCNGATTTTCTTCTCTTAGATCCGACGACGGTTTTTCTTCTCTTAATAGTA
. : . : . : . : . : . :
JMFF026C24+ CTCATGCGGC
JMFF050J17+ CATGAGGGAAAAACGCCGCTCGGACTCGCCGATTTTGTTTGCGCCTCGATCTCATGCGGC
JMFF042C04+ CATGAGGGAAAAACGCCGCTCGGACTCGCCGATTTTGTTTGCGCCTCGATCTCATGCGGC
JMFF041J14+ ACGCCGCTCGGACTCGCCGA-TTTGTNTGCGCCTCGATCTCATGCGGC
____________________________________________________________
consensus CATGAGGGAAAAACGCCGCTCGGACTCGCCGATTTTGTTTGCGCCTCGATCTCATGCGGC
. : . : . : . : . : . :
JMFF026C24+ AGATCTTGGGACGATTCAGAGACGTCGCAGATTGTATCAAACATCAGATCGTCAAACAAA
JMFF050J17+ AGATCTTGGGACGATTCAGAGACGTCGCAGATTGTATCAAACATCAGATCGTCAAACAAA
JMFF042C04+ AGATCTTGGGACGATTCAGAGACGTCGCAGATTGTATCAAACATCAGATCGTCAAACAAA
JMFF041J14+ AGATCTTGGGACGATTCAGAGACGTCGCAGATTGTATCAAACATCAGATCGTCAAACAAA
____________________________________________________________
consensus AGATCTTGGGACGATTCAGAGACGTCGCAGATTGTATCAAACATCAGATCGTCAAACAAA
. : . : . : . : . : . :
JMFF026C24+ GACCAACCGGATTGTTCAGAATCCGGATCCACCTGGGCCAAAGAAGGCGGATTTTGGGAT
JMFF050J17+ GACCAACCGGATTGTTCAGAATCCGGATCCACCTGGGCCAAAGAAGGCGGATTTTGGGAT
JMFF042C04+ GACCAACCGGATTGTTCAGAATCCGGATCCACCTGGGCCAAAGAAGGCGGATTTTGGGAT
JMFF041J14+ GACCAACCGGATTGTTCAGAATCCGGATCCACCTGGGCCAAAGAAGGCGGATTTTGGGAT
____________________________________________________________
consensus GACCAACCGGATTGTTCAGAATCCGGATCCACCTGGGCCAAAGAAGGCGGATTTTGGGAT
. : . : . : . : . : . :
JMFF026C24+ CCGGATCCACCAGATTGAGACAAGTCGGGTGGTTCTGTGAAATTCTCATCGGCTCCGAGC
JMSF006D19+ CCGAGC
JMFF050J17+ CCGGATCCACCAGATTGAGACAAGTCGGGTGGTTCTGTGAAATTCTCATCGGCTCCGAGC
JMFF042C04+ CCGGATCCACCAGATTGAGACAAGTCGGGTGGTTCTGTGAAATTCTCATCGGCTCCGAGC
JMFF041J14+ CCGGATCCACCAGATTGAGACAAGTCGGGTGGTTCTGTGAAATTCTCATCGGCTCCGAGC
____________________________________________________________
consensus CCGGATCCACCAGATTGAGACAAGTCGGGTGGTTCTGTGAAATTCTCATCGGCTCCGAGC
. : . : . : . : . : . :
JMFF026C24+ TCGCGTTCGAGTCCGAAATCGGAATTCTCCAAGAGCACACCGGAGTGGAGGAGGCCCGGG
JMSF006D19+ TCGCGTTCGAGTCCGAAATCGGAATTCTCCAAGAGCACACCGGAGTGGAGGAGGCCCGGG
JMFF050J17+ TCGCGTTCGAGTCCGAAATCGGAATTCTCCAAGAGCACACCGGAGTGGAGGAGGCCCGGG
JMFF042C04+ TCGCGTTCGAGTCCGAAATCGGAATTCTCCAAGAGCACACCGGAGTGGAGGAGGCCCGGG
JMFF041J14+ TCGCGTTCGAGTCCGAAATCGGAATTCTCCAAGAGCACACCGGAGTGGAGGAGGCCCGGG
JMFF048B23+ AGTCCGAAATCGGAATTCTCCAAGAGCACACCGGAGTGGAGGAGGCCCGGG
____________________________________________________________
consensus TCGCGTTCGAGTCCGAAATCGGAATTCTCCAAGAGCACACCGGAGTGGAGGAGGCCCGGG
. : . : . : . : . : . :
JMFF026C24+ CAGCAGAAGGCCAGCTTGTAGAGAGCAGCCCAACCGCCAGGCGGGGCTGCTGCCGCGGCG
JMSF006D19+ CAGCAGAAGGCCAGCTTGTAGAGAGCAGCCCAACCGCCAGGCGGGGCTGCTGCCGCGGCG
JMFF050J17+ CAGCAGAAGGCCAGCTTGTAGAGAGCAGCCCAACCGCCAGGCGGGGCTGCTGCCGCGGCG
JMFF042C04+ CAGCAGAAGGCCAGCTTGTAGAGAGCAGCCCAACCGCCAGGCGGGGCTGCTGCCGCGGCG
JMFF041J14+ AAGCAGAAGGCCAGCTTGTAGAGAGCAGCCCAACCGCCAGGCGGGGCTGCTGCCGCGGCG
JMFF048B23+ CAGCAGAAGGCCAGCTTGTAGAGAGCAGCCCAACCGCCAGGCGGGGCTGCTGCCGCGGCG
____________________________________________________________
consensus CAGCAGAAGGCCAGCTTGTAGAGAGCAGCCCAACCGCCAGGCGGGGCTGCTGCCGCGGCG
. : . : . : . : . : . :
JMFF026C24+ GCGGCGGAGAGAAGATCGGAGACGACTGCGGGAATGGCCTGAGAGCACCTGGATTTGCAG
JMSF006D19+ GCGGCGGAGAGAAGATCGGAGACGACTGCGGGAATGGCCTGAGAGCACCTGGATTTGCAG
JMFF050J17+ GCGGCGGAGAGAAGATCGGAGACGACTGCGGGAATGGCCTGAGAGCACCTGGATTTGCAG
JMFF042C04+ GCGGCGGAGAGAAGATCGGAGACGACTGCGGGAATGGCCTGAGAGCACCTGGATTTGCAG
JMSF012J22+ CGACTGCGGGAATGNCCTGAGAGCACCTGGATTTGCAG
JMFF041J14+ GCGGCGGAGAGAAGATCGGAGACGACTGCGGGAATGGCCTGAGAGCACCTGGATTTGCAG
JMFF048B23+ GCGGCGGAGAGAAGATCGGAGACGACTGCGGGAATGGCCTGAGAGCACCTGGATTTGCAG
____________________________________________________________
consensus GCGGCGGAGAGAAGATCGGAGACGACTGCGGGAATGGCCTGAGAGCACCTGGATTTGCAG
. : . : . : . : . : . :
JMFF026C24+ CAGAGGTCGCGGATGAGAGAGGAGAATTTGGTGGAGACGCAGGCGAGGCGTGCCCAGTAG
JMSF006D19+ CAGAGGTCGCGGATGAGAGAGGAGAATTTGGTGGAGACGCAGGCGAGGCGTGCCCAGTAG
JMFF050J17+ CAGAGGTCGCGGATGAGAGAGGAGAATTTGGTGGAGACGCAGGCGAGGCGTGCCCAGTAG
JMFF042C04+ CAGAGGTCGCGGATGAGAGAGGAGAATTTGGTGGAGACGCAGGCGAGGCGTGCCCAGTAG
JMSF012J22+ CAGAGGTCGCGGATGAGAGAGGAGAATTTGGTGGAGACGCAGGCGAGGCGTGCCCAGTAG
JMFF041J14+ CAGAGGTCGCGGATGAGAGAGGAGAATTTGGTGGAGACGCAGGCGAGGCGTGCCCAGTAG
JMFF048B23+ CAGAGGTCGCGGATGAGAGAGGAGAATTTGGTGGAGACGCAGGCGAGGCGTGCCCAGTAG
____________________________________________________________
consensus CAGAGGTCGCGGATGAGAGAGGAGAATTTGGTGGAGACGCAGGCGAGGCGTGCCCAGTAG
. : . : . : . : . : . :
JMFF026C24+ CGAGGGTCGTCCTCGAGCTTGTAGAAAATGTTGAGAATGATGTCGTCGGAGAGCACAGAG
JMSF006D19+ CGAGGGTCGTCCTCGAGCTTGTAGAAAATGTTGAGAATGATGTCGTCGGAGAGCACAGAG
JMFF050J17+ CGAGGGTCGTCCTCGAGCTTGTAGAAAATGTTGAGAATGATGTCGTCGGAGAGCACAGAG
JMFF042C04+ CGAGGGTCGTCCTCGAGCTTGTAGAAAATGTTGAGAATGATGTCGTCGGAGAGCACAGAG
JMSF012J22+ CGAGGGTCGTCCTCGAGCTTGTAGAAAATGTTGAGAATGATGTCGTCGGAGAGCACAGAG
JMFF041J14+ CGAGGGTCGTCCTCGAGCTTGTAGAAAATGTTGAGAATGATGTCGTCGGAGAGCACAGAG
JMFF048B23+ CGAGGGTCGTCCTCGAGCTTGTAGAAAATGTTGAGAATGATGTCGTCGGAGAGCACAGAG
____________________________________________________________
consensus CGAGGGTCGTCCTCGAGCTTGTAGAAAATGTTGAGAATGATGTCGTCGGAGAGCACAGAG
. : . : . : . : . : . :
JMFF026C24+ AAAGCATTTTCAGCCATAGCGGAACGCGCC
JMSF006D19+ AAAGCATTTTCAGCCATAGCGGAACGCGCC
JMFF050J17+ AAAGCATTTTCAGCCATAGCGGAACGCGCC
JMFF042C04+ AAAGCATTTTCAGCCATAGCGGAACGCGCCAATCTCCTCCACACCACTATCGGATGATGC
JMSF012J22+ AAAGCATTTTCAGCCATAGCGGAACGCGCCAATCTCCTCCACACCACTATCGGATGATGT
JMFF041J14+ AAAGCATTTTCAGCCATAGCGGAACGCGCCAATCTCCTCCACACCACTATCGGATGATGT
JMFF048B23+ AAAGCATTTTCAGCCATAGCGGAACGCGCCAATCTCCTCCACACCACTATCGGATGATGT
____________________________________________________________
consensus AAAGCATTTTCAGCCATAGCGGAACGCGCCAATCTCCTCCACACCACTATCGGATGATGT
. : . : . : . : . : . :
JMFF042C04+ TTTCACAGTCAATC
JMSF012J22+ TTTCACAGTCAATCAAAGCGGACCAGCTGAGTTGTATTCTT
JMFF041J14+ TTTCACAGTCAATCAAAGCGGACCAGCTGAGTTGTATTCTTGACTTCATTCTACGCCAT
JMFF048B23+ TTTCACAGTCAATCAAAGCGGACCAGCTGAGTTGTATTCTTGACTTCATTCTACGCCATT
____________________________________________________________
consensus TTTCACAGTCAATCAAAGCGGACCAGCTGAGTTGTATTCTTGACTTCATTCTACGCCATT