Contig 011620:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF044H09Sequence580011620 (7)632005517 (7)
JMFN011C11Sequence620011620 (7)
JMFN020E23Sequence414011620 (7)
JMFN032K21Sequence633011620 (7)
JMFN035C11Sequence633011620 (7)
JMFN038D07Sequence613011620 (7)
JMFS158C04Sequence569011620 (7)

Alignment

This contig is upended


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JMFN032K21+                    TTAAGCATCATACAATCCCATAGAACCTCAAAGAAACACTACAGAAATCCA
JMFN011C11+                                CAATCCCATAGAACCTCAAAGAAACACTACAGAAATCCA
JMFN035C11+                       AGCATCATACAATCCCATAGAACCTCAAAGAAACACTACAGAAATCCA
JMFN038D07+                                              CTCAAAGAAACACTACAGAAATCCA
                      ____________________________________________________________
consensus                      TTAAGCATCATACAATCCCATAGAACCTCAAAGAAACACTACAGAAATCCA
 
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JMFN032K21+           CAGCAAAAGTCTACAAGTCTCACAGTGCATCATGCATCCATGCATCCAAACCTAGGGGCA
JMFN011C11+           CAGCAANAGTCTACAAGTCTCACAGTGCATCATGCATCCATGCATCCAAACCTAGGGGCA
JMFS158C04+                           GTCTCACAGTGCATCATGCATCCATGCATCCAAACCTAGGGGCA
JMFN035C11+           CAGCAAAAGTCTACAAGTCTCACAGTGCATCATGCATCCATGCATCCAAACCTAGGGGCA
JMFN038D07+           CAGCAAAAGTCTACAAGTCTCACAGTGCATCATGCATCCATGCATCCAAACCTAGGGGCA
JMFF044H09+                               CACAGTGCATCATGCATCCATGCATCCAAACCTAGGGGCA
                      ____________________________________________________________
consensus             CAGCAAAAGTCTACAAGTCTCACAGTGCATCATGCATCCATGCATCCAAACCTAGGGGCA
 
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JMFN032K21+           TAAAAGCCTATGTAGATCGTGATAAGTTCACCAAATCGTCCAAAGCTTGTTGTAAGTTGG
JMFN011C11+           TAAAAGCCTATGTAGATCGTGATAAGTTTACCAAATCGTCCAAAGCTTGTTGTAAGTTGG
JMFS158C04+           TAAAAGCCTATGTAGATCGTGATAAGTTCACCAAATCGTCCAAAGCTTGTTGTAAGTTGG
JMFN035C11+           TAAAAGCCTATGTAGATCGTGATAAGTTCACCAAATCGTCCAAAGCTTGTTGTAAGTTGG
JMFN038D07+           TAAAAGCCTATGTAGATCGTGATAAGTTCACCAAATCGTCCAAAGCTTGTTGTAAGTTGG
JMFF044H09+           TAAAAGCCTATGTAGATCGTGATAAGTTCACCAAATCGTCCAAAGCTTGTTGTAAGTTGG
                      ____________________________________________________________
consensus             TAAAAGCCTATGTAGATCGTGATAAGTTCACCAAATCGTCCAAAGCTTGTTGTAAGTTGG
 
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JMFN032K21+           CAAGGAAGCCTTTCGCCTCATCGTTTAAGACTTCCAACCGCTTCCCCTCTTTGATGATTT
JMFN011C11+           CAAGGAAGCCTTTCGCCTCATCGTTTAAGACTTCCAACCGCTTCCCCTCTTTGATGATTT
JMFS158C04+           CAAGGAAGCCTTTCGCCTCATCGTTTAAGACTTCCAACCGCTTCCCCTCTTTGATGATTT
JMFN020E23+                                         CTTCCAACCGCTTCCCCTGTTTGATGATTT
JMFN035C11+           CAAGGAAGCCTTTCGCCTCATCGTTTAAGACTTCCAACCGCTTCCCCTCTTTGATGATTT
JMFN038D07+           CAAGGAAGCCTTTCGCCTCATCGTTTAAGACTTCCAACCGCTTCCCCTCTTTGATGATTT
JMFF044H09+           CAAGGAAGCCTTTCGCCTCATCGTTTAAGACTTCCAACCGCTTCCCCTCTTTGATGATTT
                      ____________________________________________________________
consensus             CAAGGAAGCCTTTCGCCTCATCGTTTAAGACTTCCAACCGCTTCCCCTCTTTGATGATTT
 
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JMFN032K21+           TATCGATTTCCTGGTTGACAATTTCCAATTTAGTATTAAGCGCAGTTATCTCATCCCGAT
JMFN011C11+           TATCGATTTCCTGGTTGACAATTTCCAATTTAGTATTAAGCGCAGTTATCTCATCCCGAT
JMFS158C04+           TATCGATTTCCTGGTTGACAATTTCCAATTTAGTATTAAGCGCAGTTATCTCATCCCGAT
JMFN020E23+           TATCGATTTCCTGGTTGGCAATTTCCAATTTAGTATTAAGCGCAGTTATCTCATCCCGAT
JMFN035C11+           TATCGATTTCCTGGTTGACAATTTCCAATTTAGTATTAAGCGCAGTTATCTCATCCCGAT
JMFN038D07+           TATCGATTTCCTGGTTGACAATTTCCAATTTAGTATTAAGCGCAGTTATCTCATCCCGAT
JMFF044H09+           TATCGATTTCCTGGTTGACAATTTCCAATTTAGTATTAAGCGCAGTTATCTCATCCCGAT
                      ____________________________________________________________
consensus             TATCGATTTCCTGGTTGACAATTTCCAATTTAGTATTAAGCGCAGTTATCTCATCCCGAT
 
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JMFN032K21+           TGCTTTTTATTTCGCAGTACTTTCTGGCTATTGTCAACGCCCTTTCAACATGCAGCTGAA
JMFN011C11+           TGCTTTTTATTTCGCAGTACTTTCTGGCTATTGTCAACGCCCTTTCAACATGCAGCTGAA
JMFS158C04+           TGCTTTTTATTTCGCAGTACTTTCTGGCTATTGTCAACGCCCTTTCAACATGCAGCTGAA
JMFN020E23+           TGCTTTTTATTTCGCAGTACTTTCTGGCTATTGTCAACGCCCTTTCAACATGCAGCTGAA
JMFN035C11+           TGCTTTTTATTTCGCAGTACTTTCTGGCTATTGTCAACGCCCTTTCAACATGCAGCTGAA
JMFN038D07+           TGCTTTTTATTTCGCAGTACTTTCTGGCTATTGTCAACGCCCTTTCAACATGCAGCTGAA
JMFF044H09+           TGCTTTTTATTTCGCAGTACTTTCTGGCTATTGTCAACGCCCTTTCAACATGCAGCTGAA
                      ____________________________________________________________
consensus             TGCTTTTTATTTCGCAGTACTTTCTGGCTATTGTCAACGCCCTTTCAACATGCAGCTGAA
 
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JMFN032K21+           GTGGCATCTCTAACTCGGCCAAAACGCCGCGGTGCTCCTCAAGTAAAGCAGTAAGTTGTC
JMFN011C11+           GTGGCATCTCTAACTCGGCCAAAACGCCGCGGTGCTCCTCAAGTAAAGCAGTAAGTTGTC
JMFS158C04+           GTGGCATCTCTAACTCGGCCAAAACGCCGCGGTGCTCCTCAAGTAAAGCAGTAAGTTGTC
JMFN020E23+           GTGGCATCTCTAACTCGGCCAAAACGCCGCGGTGCTCCTCAAGTAAAGCAGTAAGTTGTC
JMFN035C11+           GTGGCATCTCTAACTCGGCCAAAACGCCGCGGTGCTCCTCAAGTAAAGCAGTAAGTTGTC
JMFN038D07+           GTGGCATCTCTAACTCGGCCAAAACGCCGCGGTGCTCCTCAAGTAAAGCAGTAAGTTGTC
JMFF044H09+           GTGGCATCTCTAACTCGGCCAAAACGCCGCGGTGCTCCTCAAGTAAAGCAGTAAGTTGTC
                      ____________________________________________________________
consensus             GTGGCATCTCTAACTCGGCCAAAACGCCGCGGTGCTCCTCAAGTAAAGCAGTAAGTTGTC
 
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JMFN032K21+           TTTCTTGTTCCTTTATCATACGTCCCAGATCATTAAGACTGCAGCCAGATAGCTCCTCAT
JMFN011C11+           TTTCTTGTTCCTTTATCATACGTCCCAGATCATTAAGACTGCAGCCAGATAGCTCCTCAT
JMFS158C04+           TTTCTTGTTCCTTTATCATACGTCCCAGATCATTAAGACTGCAGCCAGATAGCTCCTCAT
JMFN020E23+           TTTCTTGTTCCTTTATCATACGTCCCAGATCATTAAGACTGCAGCCAGATAGCTCCTCAT
JMFN035C11+           TTTCTTGTTCCTTTATCATACGTCCCAGATCATTAAGACTGCAGCCAGATAGCTCCTCAT
JMFN038D07+           TTTCTTGTTCCTTTATCATACGTCCCAGATCATTAAGACTGCAGCCAGATAGCTCCTCAT
JMFF044H09+           TTTCTTGTTCCTTTATCATACGTCCCAGATCATTAAGACTGCAGCCAGATAGCTCCTCAT
                      ____________________________________________________________
consensus             TTTCTTGTTCCTTTATCATACGTCCCAGATCATTAAGACTGCAGCCAGATAGCTCCTCAT
 
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JMFN032K21+           TTTGCTTACGTAGATCCATTAAAAAGCCCTGAGTCTTAATGGTCTGTTGAATGTTGATGT
JMFN011C11+           TTTGCTTACGTAGATCCATTAAAAAGCCCTGAGTCTTAATGGTCTGTTGAATGTTGATGT
JMFS158C04+           TTTGCTTACGTAGATCCATTAAAAAGCCCTGAGTCTTAATGGTCTGTTGAATGTTGATGT
JMFN020E23+           TTTGCTTACGTAGATCCATTAAAAAGCCCTGAGTCTTAATGGTCTGTTGAATGTTGATGT
JMFN035C11+           TTTGCTTACGTAGATCCATTAAAAAGCCCTGAGTCTTAATGGTCTGTTGAATGTTGATGT
JMFN038D07+           TTTGCTTACGTAGATCCATTAAAAAGCCCTGAGTCTTAATGGTCTGTTGAATGTTGATGT
JMFF044H09+           TTTGCTTACGTAGATCCATTAAAAAGCCCTGAGTCTTAATGGTCTGTTGAATGTTGATGT
                      ____________________________________________________________
consensus             TTTGCTTACGTAGATCCATTAAAAAGCCCTGAGTCTTAATGGTCTGTTGAATGTTGATGT
 
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JMFN032K21+           TGACGCGAGTTGTTGCTGGAGAAGAACCTGAGAGTGCCGGAGAGGAACCTGAGAATGAGT
JMFN011C11+           TGACGCGAGTTGTTGCTGGAGAAGAACCTGAGAGTGCCGGAGAGGAACCTGAGAATGAGT
JMFS158C04+           TGACGCGAGTTGTTGCTGGAGAAGAACCTGAGAGTGCCGGAGAGGAACCTGAGAATGAGT
JMFN020E23+           TGACGCGAGTTGTTGCTGGAGAAGAACCTGAGAGTGCCGGAGAGGAACCTGAGAATGAGT
JMFN035C11+           TGACGCGAGTTGTTGCTGGAGAAGAACCTGAGAGTGCCGGAGAGGAACCTGAGAATGAGT
JMFN038D07+           TGACGCGAGTTGTTGCTGGAGAAGAACCTGAGAGTGCCGGAGAGGAACCTGAGAATGAGT
JMFF044H09+           TGACGCGAGTTGTTGCTGGAGAAGAACCTGAGAGTGCCGGAGAGGAACCTGAGAATGAGT
                      ____________________________________________________________
consensus             TGACGCGAGTTGTTGCTGGAGAAGAACCTGAGAGTGCCGGAGAGGAACCTGAGAATGAGT
 
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JMFN032K21+           TGTTGTTGGGAAGAGCTGTCGAGAGTGAGTTGTTGGGACTTG                  
JMFN011C11+           TGTTGTTGGGAAGAGC                                            
JMFS158C04+           TGTTGTTGGGAAGA                                              
JMFN020E23+           TGTTGTTGGGAAGAGCTGTCGAGA                                    
JMFN035C11+           TGTTGTTGGGAAGAGCTGTCGAGAGTGAGTTGTTGGGACTTGGGA               
JMFN038D07+           TGTTGTTGGGAAGAGCTGTCGAGAGTGAGTTGTTGGGACTTGGGAGGA            
JMFF044H09+           TGTTGTTGGGAAGAGCTGTCGAGAGTGAGTTGTTGGGACTTGGGAGGAGTGGAGAGTGGA
                      ____________________________________________________________
consensus             TGTTGTTGGGAAGAGCTGTCGAGAGTGAGTTGTTGGGACTTGGGAGGAGTGGAGAGTGGA