Contig 011612:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF042M14Sequence654011612 (5)ref|XP_009615237.1|1e-77PREDICTED: nucleolar complex protein 4 homolog [Nicotiana tomentosiformis]585011273 (10)gb|KDO68426.1|4e-56hypothetical protein CISIN_1g010906mg [Citrus sinensis]
JMFN043C11Sequence598011612 (5)ref|XP_009615237.1|2e-57PREDICTED: nucleolar complex protein 4 homolog [Nicotiana tomentosiformis]
JMSF036A14Sequence703011612 (5)ref|XP_009615237.1|6e-91PREDICTED: nucleolar complex protein 4 homolog [Nicotiana tomentosiformis]716011273 (10)ref|XP_009615237.1|2e-79PREDICTED: nucleolar complex protein 4 homolog [Nicotiana tomentosiformis]
JMSF040P16Sequence621011612 (5)ref|XP_009615237.1|1e-82PREDICTED: nucleolar complex protein 4 homolog [Nicotiana tomentosiformis]839011273 (10)ref|XP_009615237.1|3e-85PREDICTED: nucleolar complex protein 4 homolog [Nicotiana tomentosiformis]
JMSF041H08Sequence792011612 (5)ref|XP_009615237.1|1e-99PREDICTED: nucleolar complex protein 4 homolog [Nicotiana tomentosiformis]812011273 (10)ref|XP_009615237.1|4e-93PREDICTED: nucleolar complex protein 4 homolog [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMSF041H08+                          TCTTGCTTTCTGCTTTTGAATCCAAAGCATTTTCCCTGTTATTGT
                      ____________________________________________________________
consensus                            TCTTGCTTTCTGCTTTTGAATCCAAAGCATTTTCCCTGTTATTGT
 
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JMSF041H08+           TTTTTCCCAACAAAAATACCTAGACCATTCCACATCTCATATTTTGACATTTGATCAAGA
JMSF036A14+                                                                ATCAAGA
                      ____________________________________________________________
consensus             TTTTTCCCAACAAAAATACCTAGACCATTCCACATCTCATATTTTGACATTTGATCAAGA
 
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JMSF041H08+           CCATCAGGTGGTGGGATATGCGATAACATATAATATATCTTCTGAACTGAAAGCTCCATA
JMSF036A14+           CCATCAGGTGGTGGGATATGCGATAACATATAATATATCTTCTGAACTGAAAGCTCCATA
                      ____________________________________________________________
consensus             CCATCAGGTGGTGGGATATGCGATAACATATAATATATCTTCTGAACTGAAAGCTCCATA
 
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JMSF041H08+           CTTTCTCTTGGAGGATTCTCAGAATTGCCAGATGAAATCTTGTTATCATAATCAGTAATG
JMSF040P16+                          TTCTCAGAATTGCCAGATGAAATCTTGTTATCATAATCAGTAATG
JMSF036A14+           CTTTCTCTTGGAGGATTCTCAGAATTGCCAGATGAAATCTTGTTATCATAATCAGTAATG
                      ____________________________________________________________
consensus             CTTTCTCTTGGAGGATTCTCAGAATTGCCAGATGAAATCTTGTTATCATAATCAGTAATG
 
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JMSF041H08+           TATTTTGCTTCTAATGTTTGTAAGAGCTTTTCCATGCTGATGTAAGTAAAATAACGAATA
JMSF040P16+           TATTTTGCTTCTAATGTTTGTGAGAGCTTTTCCATGCTGATGTAAGTAAAATAACGAATA
JMSF036A14+           TATTTTGCTTCTAATGTTTGTGAGAGCTTTTCCATGCTGATGTAAGTAAAATAACGAATA
JMFN043C11+                   TTCTAATGTTTGTGAGAGCTTTTCCATGCTGATGTAAGTAAAATAACGAATA
JMFF042M14+                 GCTTCTAATGTTTGTGAGAGCTTTTCCATGCTGATGCAAGTAAAATAACGAATA
                      ____________________________________________________________
consensus             TATTTTGCTTCTAATGTTTGTGAGAGCTTTTCCATGCTGATGTAAGTAAAATAACGAATA
 
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JMSF041H08+           TCAATGTAGTTGAAATACTTTTCTGCAAGCAAATGAAGCAAAATATCATCCACTCCCAAT
JMSF040P16+           TCAATGTAGTTGAAATACTTTTCTGCAAGCAAATGAAGCAAAATATCATCCACTCCCAAT
JMSF036A14+           TCAATGTAGTTGAAATACTTTTCTGCAAGCAAATGAAGCAAAATATCATCCACTCCCAAT
JMFN043C11+           TCAATGTAGTTGAAATACTTTTCTGCAAGCAAATGAAGCAAAATATCATCCACTCCCAAT
JMFF042M14+           TCAATGTAGTTGAAATACTTTTCTGCAAGCAAATGAAGCAAAATATCATCCACTCCCAAT
                      ____________________________________________________________
consensus             TCAATGTAGTTGAAATACTTTTCTGCAAGCAAATGAAGCAAAATATCATCCACTCCCAAT
 
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JMSF041H08+           GAGGAGGAGTGAACAATACTATGAAGAAAACGGTGGTATATTGAAGAGTGAAACTTTCCA
JMSF040P16+           GAGGAGGAGTGAACAATACTATGAAGAAAACGGTGGTATATTGAAGAGTGAAACTTTCCA
JMSF036A14+           GAGGAGGAGTGAACAATACTATGAAGAAAACGGTGGTATATTGAAGAGTGAAACTTTCCA
JMFN043C11+           GAGGAGGAGTGAACAATACTATGAAGAAAACGGTGGTATATTGAAGAGTGAAACTTTCCA
JMFF042M14+           GAGGAGGAGTGAACAATACTATGAAGAAAACGGTGGTATATTGAAGAGTGAAACTTTCCA
                      ____________________________________________________________
consensus             GAGGAGGAGTGAACAATACTATGAAGAAAACGGTGGTATATTGAAGAGTGAAACTTTCCA
 
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JMSF041H08+           GAGTTTCCAACCTTTACAAACTCCATTAGTGCATCTAATACAACTTCCCTTAGGGCTTGT
JMSF040P16+           GAGTTTCCAACCTTTACAAACTCCATTAGTGCATCTAATACAACTTCCCTTAGGGCTTGT
JMSF036A14+           GAGTTTCCAACCTTTACAAACTCCATTAGTGCATCTAATACAACTTCCCTTAGGGCTTGT
JMFN043C11+           GAGTTTCCAACCTTTACAAACTCCATTAGTGCATCTAATACAACTT-CGGGGXXXXXXXX
JMFF042M14+           GAGTTTCCAACCTTTACAAACTCCATTAGTGCATCTAATACAACTTCCCTTAGGGCTTGT
                      ____________________________________________________________
consensus             GAGTTTCCAACCTTTACAAACTCCATTAGTGCATCTAATACAACTTCCCTTAGGGCTTGT
 
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JMSF041H08+           TCGCACTGGGAAGAGGTGGCGATGTCAATGAGGGATTGAACGAGGTCTTCGAACTTGGAG
JMSF040P16+           TCGCACTGGGAAGAGGTGGCGATGTCAATGAGGGATTGAACGAGGTCTTCGAACTTGGAG
JMSF036A14+           TCGCACTGGGAAGAGGTGGCGATGTCAATGAGGGATTGAACGAGGTCTTCGAACTTGGAG
JMFN043C11+           XXXXXXXXXXXXXXXXXXXXXXXXXCAATGAGGGATTGAACGAGGTCTTCGAACTTGGAG
JMFF042M14+           TCGCACTGGGAAGAGGTGGCGATGTCAATGAGGGATTGAACGAGGTCTTCGAACTTGGAG
                      ____________________________________________________________
consensus             TCGCACTGGGAAGAGGTGGCGATGTCAATGAGGGATTGAACGAGGTCTTCGAACTTGGAG
 
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JMSF041H08+           CGGAGCCAAATACTATAGATAATTTCGGGATCATCTTGGGGGTCAGCAGCTGCAGTGGTC
JMSF040P16+           CGGAGCCAAATACTATAGATAATTTCGGGATCATCTTGGGGGTCAGCAGCTGCAGTGGTC
JMSF036A14+           CGGAGCCAAATACTATAGATAATTTCGGGATCATCTTGGGGGTCAGCAGCTGCAGTGGTC
JMFN043C11+           CGGAGCCAAATACTATAGATAATTTCGGGATCATCTTGGGGGTCAGCAGCTGCAGTGGTC
JMFF042M14+           CGGAGCCAAATACTATAGATAATTTCGGGATCATCTTGGGGGTCAGCAGCTGCAGTGGTC
                      ____________________________________________________________
consensus             CGGAGCCAAATACTATAGATAATTTCGGGATCATCTTGGGGGTCAGCAGCTGCAGTGGTC
 
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JMSF041H08+           GAGGGGAGGTCGGGAATGAGAGGAGTGAAGAATGCTTGGAGGGAAAGTAGCGCTTCGAGG
JMSF040P16+           GAGGGGAGGTCGGGAATGAGAGGAGTGAAGAATGCTTGGAGGGAAAGTAGCGCTTCGAGG
JMSF036A14+           GAGGGGAGGTCGGGAATGAGAGGAGTGAAGAATGCTTGGAGGGAAAGTAGCGCTTCGAGG
JMFN043C11+           GAGGGGAGGTCGGGAATGAGAGGAGTGAAGAATGCTTGGAGGGAAAGTAGCGCTTCGAGG
JMFF042M14+           GAGGGGAGGTCGGGAATGAGAGGAGTGAAGAATGCTTGGAGGGAAAGTAGCGCTTCGAGG
                      ____________________________________________________________
consensus             GAGGGGAGGTCGGGAATGAGAGGAGTGAAGAATGCTTGGAGGGAAAGTAGCGCTTCGAGG
 
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JMSF041H08+           GCATATTGCGGAGCAGAAGAGGGATTGATGAAGGTGAGGAGGACAGGGAGGTTATTGATA
JMSF040P16+           GCATATTGCGGAGCAGAAGAGGGATTGATGAAGGTGAGGAGGACAGGGAGGTTATTGATA
JMSF036A14+           GCATATTGCGGAGCAGAAGAGGGATTGATGAAGGTGAGGAGGACAGGGAGGTTATTGATA
JMFN043C11+           GCATATTGCGGAGCAGAAGAGGGATTGATGAAGGTGAGGAGGACAGGGAGGTTATTGATA
JMFF042M14+           GCATATTGCGGAGCAGAAGAGGGATTGATGAAGGTGAGGAGGACAGGGAGGTTATTGATA
                      ____________________________________________________________
consensus             GCATATTGCGGAGCAGAAGAGGGATTGATGAAGGTGAGGAGGACAGGGAGGTTATTGATA
 
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JMSF041H08+           TGTGCTCTAGAAGACAAAAGCTTGTTTCCTAGGGTTTTCAGCTCCGCCAATGTCTTCGCA
JMSF040P16+           TGTGCTCTAGAAGACAAAAGCTTGTTTCCTAGGGTTTTCAGCTCCGCCAATGTCTTCGCA
JMSF036A14+           TGTGCTCTAGAAGACAAAAGCTTGTTTCCTAGGGTTTTCAGCTCCGCCAATGTCTTCGCA
JMFN043C11+           TGTGCTCTAGAAGACAAAAGCTTGTTTCCTAGGGTTTTCAGCTCCGCCAATGTCTTCGCA
JMFF042M14+           TGTGCTCTAGAAGACAAAAGCTTGTTTCCTAGGGTTTTCAGCTCCGCCAATGTCTTCGCA
                      ____________________________________________________________
consensus             TGTGCTCTAGAAGACAAAAGCTTGTTTCCTAGGGTTTTCAGCTCCGCCAATGTCTTCGCA
 
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JMSF041H08+           CCCTTCTTCTTGGCCATGGCGGCGTT                                  
JMSF040P16+           CCCTTCTTCTTGGCCATGGCGGCGTTGTTGGAA                           
JMSF036A14+           CCCTTCTTCTTGGCCATGGCGGCGTTGTTGGAA                           
JMFN043C11+           CCCTTCTTCTTGGCCATGGCGGCGTTGTTGGAACCGGTTATGACTCAGATTTT       
JMFF042M14+           CCCTTCTTCTTGGCCATGGCGGCGTTGTTGGAACCGGTTATGACTCAGATTTTTGAAGAA
                      ____________________________________________________________
consensus             CCCTTCTTCTTGGCCATGGCGGCGTTGTTGGAACCGGTTATGACTCAGATTTTTGAAGAA
 
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JMFF042M14+           TAAATTAGGGTCATACAAATTTCAGGATGTTTGCCGCCACTGCGCTACTGCTCTACATCT
                      ____________________________________________________________
consensus             TAAATTAGGGTCATACAAATTTCAGGATGTTTGCCGCCACTGCGCTACTGCTCTACATCT