Contig 011608:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF041P09Sequence659011608 (5)ref|XP_006365595.1|108PREDICTED: uncharacterized protein LOC102603607 [Solanum tuberosum]614002665 (5)emb|CDP06483.1|3e-33unnamed protein product [Coffea canephora]
JMFF048L15Sequence398011608 (5)ref|XP_009796832.1|2e-06PREDICTED: uncharacterized protein LOC104243355 isoform X1 [Nicotiana sylvestri338002665 (5)
JMSF001N05Sequence419011608 (5)ref|XP_006365595.1|89.0PREDICTED: uncharacterized protein LOC102603607 [Solanum tuberosum]677002665 (5)emb|CDP06483.1|4e-43unnamed protein product [Coffea canephora]
JMSF019E11Sequence506011608 (5)ref|XP_006365595.1|99.0PREDICTED: uncharacterized protein LOC102603607 [Solanum tuberosum]774002665 (5)emb|CDP06483.1|1e-45unnamed protein product [Coffea canephora]
JMSF035L16Sequence654011608 (5)ref|XP_009796832.1|6e-39PREDICTED: uncharacterized protein LOC104243355 isoform X1 [Nicotiana sylvestri310002665 (5)

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035L16+                                         AATAATATGTCCATTCCTTGTGAGTGTTTG
                      ____________________________________________________________
consensus                                           AATAATATGTCCATTCCTTGTGAGTGTTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035L16+           CTGGGAGAGAGGTTTTATAAGCTTCAGACCAAGTATCCACAATATCAAGGGGGGGATTTC
                      ____________________________________________________________
consensus             CTGGGAGAGAGGTTTTATAAGCTTCAGACCAAGTATCCACAATATCAAGGGGGGGATTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035L16+           TGTAAAGTCCATACAGCATTGGTCCACCTTTTGCATTATCTATCTCCTCCACCGTTATTT
JMSF019E11+                                         TTGCATTATCTATCTCCTCCACCGTTATTT
JMSF001N05+                                                                      T
JMFF041P09+           TGTAAAGTCCATACAGCATTGGTCCACCTTTTGCATTATCTATCTCCTCCACCGTTATTT
                      ____________________________________________________________
consensus             TGTAAAGTCCATACAGCATTGGTCCACCTTTTGCATTATCTATCTCCTCCACCGTTATTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035L16+           GCTCCACAAACAATGGATTAGGTTTTATCATAATTGATGAATTTGGTCCAAGCTGCAAAT
JMSF019E11+           GCTCCACAAACAATGGATTAGGTTTTATCATAATTGATGAATTTGGTCCAAGCTGCAAAT
JMSF001N05+           GCTCCACAAACAATGGATTAGGTTTTATCATAATTGATGAATTTGGTCCAAGCTGCAAAT
JMFF041P09+           GCTCCACAAACAATGGATTAGGTTTTATCATAATTGATGAATTTGGTCCAAGCTGCAAAT
                      ____________________________________________________________
consensus             GCTCCACAAACAATGGATTAGGTTTTATCATAATTGATGAATTTGGTCCAAGCTGCAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035L16+           TTGATGTCCCATAAACCCCCCATATCAAAGTCATAGACACGAAGAACCAGAAGGTAGTAA
JMSF019E11+           TTGATGTCCCATAAACCCCCCATATCAAAGTCATAGACACGAAGAACCAAAAGGTAGTAA
JMSF001N05+           TTGATGTCCCATAAACCCCCCATATCAAAGTCATAGACACGAAGAACCAGAAGGTAGTAA
JMFF048L15+                                                         CCAGAAGGTAGTAA
JMFF041P09+           TTGATGTCCCATAAACCCCCCATATCAAAGTCATAGACACGAAGAACCAGAAGGTAGTAA
                      ____________________________________________________________
consensus             TTGATGTCCCATAAACCCCCCATATCAAAGTCATAGACACGAAGAACCAGAAGGTAGTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035L16+           CAACGACAACACAAGACCAAGTGTCGTCTGAGGAAGATTGCACCGTCTCATCATTGTTTG
JMSF019E11+           CAACGACAACACAAGACCAAGTGTCGTCTGAGGAAGATTGCACCGTCTCATCATTGTTTG
JMSF001N05+           CAACGACAACACAAGACCAAGTGTCGTCTGAGGAAGATTGCACCGTCTCATCATTGTTTG
JMFF048L15+           CAACGACAACACAAGACCAAGTGTCGTTTGAGGAAGATTGCACCGTCTCATCATTGTTTG
JMFF041P09+           CAACGACAACACAAGACCAAGTGTCGTCTGAGGAAGATTGCACCGTCTCATCATTGTTTG
                      ____________________________________________________________
consensus             CAACGACAACACAAGACCAAGTGTCGTCTGAGGAAGATTGCACCGTCTCATCATTGTTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035L16+           TTGGCTGGAAATGTGGAGGATAAGCGTCGTATACGGCGGTGCTACGCTGAGGAAAGGGTT
JMSF019E11+           TTGGCTGGAAATGTGGAGGATAAGCGTCGTATACGGCGGTGCTACGCTGAGGAAAGGGTT
JMSF001N05+           TTGGCTGGAAATGTGGAGGATAAGCGTCGTATACGGCGGTGCTACGCTGAGGAAAGGGTT
JMFF048L15+           TTGGCTGGAAATGTGGAGGATAAGCGTCGTATACGGCGGTGCTACGCTGAGGAAAGGGTT
JMFF041P09+           TTGGCTGGAAATGTGGAGGATAAGCGTCGTATACGGCGGTGCTACGCTGAGGAAAGGGTT
                      ____________________________________________________________
consensus             TTGGCTGGAAATGTGGAGGATAAGCGTCGTATACGGCGGTGCTACGCTGAGGAAAGGGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035L16+           GAGGATGTCGCCGATCGTCGTATACGGCGGTGCTACGCTGAGGAAAGGGTTGAGGAGGTC
JMSF019E11+           GAGGATGTCGCCGATCGTCGTATACGGCGGTGCTACGCTGAGGAAAGGGTTGAGGAGGTC
JMSF001N05+           GAGGATGTCGCCGATCGTCGTATACGGCGGTGCTACGCTGAGGAAAGGGTTGAGGAGGTC
JMFF048L15+           GAGGATGTCGCCGATCGTCGTATACGGCGGTGCTACGCTGAGGAAAGGGTTGAGGAGGTC
JMFF041P09+           GAGGATGTCGCCGATCGTCGTATACGGCGGTGCTACGCTGAGGAAAGGGTTGAGGAGGTC
                      ____________________________________________________________
consensus             GAGGATGTCGCCGATCGTCGTATACGGCGGTGCTACGCTGAGGAAAGGGTTGAGGAGGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035L16+           GCCGATCGTCATCGTCCACCTCCTCCGCCTCGCGCACCCCCGAACCCGACGCCGTTTCCG
JMSF019E11+           GCCGATCGTCATCGTCCACCTCCTCCGCCTCGCGCACCCCCGAACCCGACGCCGTTTCCG
JMSF001N05+           GCCGATCGTCATCGTCCACCTCCTCCGCCTCGCGCACCCCCGAACCCGACGCCGTTTCCG
JMFF048L15+           GCCGATCGTCATCGTCCACCTCCTCCGCCTCGCGCACCCCCGAACCCGACGCCGTTTCCG
JMFF041P09+           GCCGATCGTCATCGTCCACCTCCTCCGCCTCGCGCACCCCCGAACCCGACGCCGTTTCCG
                      ____________________________________________________________
consensus             GCCGATCGTCATCGTCCACCTCCTCCGCCTCGCGCACCCCCGAACCCGACGCCGTTTCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035L16+           ATACCGGTACGATAAGACTCGTTGACTGAGCCCGATCTGCTTCGTC-CATTTTTAGATTT
JMSF019E11+           ATACCGGTACGATAAGACTCGTTGACTGAGCCCGATCTGCTTCGTC-CATTTTTAGATTT
JMSF001N05+           ATACCGGTACGATAAGACTCGTTGACTGAGCCCGATCTGCTTCGTC-CATTTTTAGA   
JMFF048L15+           ATACCGGTACGATAAGACTCGTTGACTGAGCCCGATCTGCTCTGTCTCATTTTTAGATTT
JMFF041P09+           ATACCGGTACGATAAGACTCGTTGACTGAGCCCGATCTGCTTCGTC-CATTTTTAGATTT
                      ____________________________________________________________
consensus             ATACCGGTACGATAAGACTCGTTGACTGAGCCCGATCTGCTTCGTC-CATTTTTAGATTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035L16+           TTAGGAAAAAAAGATACATATTCTAATAAGGGGACACGGGGATTGGGGGAGAAGAGATGA
JMSF019E11+           TTAGGAAAAAAAGATACATATTCTAATAAGGGGACACGGGGATTGGGGGAGAAGAG    
JMFF048L15+           TTAGGAAAAAAAGATACATATTCTAATAAGGGGACACGGGGATTGGGGGAGAAGAGATGA
JMFF041P09+           TTAGGAAAAAAAGATACATATTCTAATAAGGGGACACGGGGATTGGGGGAGAAGAGATGA
                      ____________________________________________________________
consensus             TTAGGAAAAAAAGATACATATTCTAATAAGGGGACACGGGGATTGGGGGAGAAGAGATGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035L16+           AGGGGTTTAATTATTGTAACCT                                      
JMFF048L15+           AGGGGTTTAATTATTGTAACCT                                      
JMFF041P09+           AGGGGTTTAATTATTGTAACCTATAATCAAATGCACCTTCGCAGCTTGGATGATTTTATC
                      ____________________________________________________________
consensus             AGGGGTTTAATTATTGTAACCTATAATCAAATGCACCTTCGCAGCTTGGATGATTTTATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF041P09+           CGGGATGGTGATTTTTATTTATTTTTTATTTATTTTTGTAGGTTTCCTTCACGGATCTGT
                      ____________________________________________________________
consensus             CGGGATGGTGATTTTTATTTATTTTTTATTTATTTTTGTAGGTTTCCTTCACGGATCTGT