Contig 011605:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF041E06Sequence630011605 (2)ref|XP_004247809.1|4e-93PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Sol465023388ref|XP_004247809.1|1e-33PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Sol
JMFS161A12Sequence495011605 (2)ref|XP_004247809.1|5e-71PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Sol

Alignment

This contig is upended


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JMFS161A12+                       TCAATGTTATGCATTAAAGAAAGCCTTTAAGGTACATTATTACACCGA
                      ____________________________________________________________
consensus                         TCAATGTTATGCATTAAAGAAAGCCTTTAAGGTACATTATTACACCGA
 
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JMFS161A12+           GAAAAGCGCAGGGCGCAACCAAGTGCAGTGAAGACTGCAATAATCGGXXXXXXXXXXXXX
                      ____________________________________________________________
consensus             GAAAAGCGCAGGGCGCAACCAAGTGCAGTGAAGACTGCAATAATCGGNNNNNNNNNNNNN
 
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JMFS161A12+           XXXXXXXXXTGCTTTCACTGCTATAACCAACAGTGCATCTGTAGACCTTACCAGACATCA
JMFF041E06+                                                         CTTACCAGACATCA
                      ____________________________________________________________
consensus             NNNNNNNNNTGCTTTCACTGCTATAACCAACAGTGCATCTGTAGACCTTACCAGACATCA
 
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JMFS161A12+           GGTCGAAGCTCCCCGGTTGCTGGGGGCATCCATCTTCCAGAGTTGTACACACTCTCGCCA
JMFF041E06+           GGTCGAAGCTCCCCGGTTGCTGGGGGCATCCATCTTCCAGAGTTGTACACACTCTCGCCA
                      ____________________________________________________________
consensus             GGTCGAAGCTCCCCGGTTGCTGGGGGCATCCATCTTCCAGAGTTGTACACACTCTCGCCA
 
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JMFS161A12+           ACTTTCCAGCCAGGCACATCTTTCATAATTCTAGCCTCTTCCTCTAGATACTTCCTCCAT
JMFF041E06+           ACTTTCCAGCCAGGCACATCTTTCATAATTCTAGCCTCTTCCTCTAGATACTTCCTCCAT
                      ____________________________________________________________
consensus             ACTTTCCAGCCAGGCACATCTTTCATAATTCTAGCCTCTTCCTCTAGATACTTCCTCCAT
 
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JMFS161A12+           TCTTTGACAAATCTTTCATCCTCTTCAGCTTGTAGCATAGGCAAGATAGCCCTACGAGCA
JMFF041E06+           TCTTTGACAAATCTTTCATCCTCTTCAGCTTGTAGCATAGGCAAGATAGCCCTACGAGCA
                      ____________________________________________________________
consensus             TCTTTGACAAATCTTTCATCCTCTTCAGCTTGTAGCATAGGCAAGATAGCCCTACGAGCA
 
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JMFS161A12+           GCATATTTTTCTTCCTTTATTACCCTGCGTTTCTTATTGCCCTGGCCCACCTGATACATG
JMFF041E06+           GCATATTTTTCTTCCTTTATTACCCTGCGTTTCTTATTGCCCTGGCCCACCTGATACATG
                      ____________________________________________________________
consensus             GCATATTTTTCTTCCTTTATTACCCTGCGTTTCTTATTGCCCTGGCCCACCTGATACATG
 
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JMFS161A12+           CCCCAAGAGAAGACGCCCAAAGCGGTGAGGAAAATGGCCATGGCGCTAGGGCCGGTGTTG
JMFF041E06+           CCCCAAGAGAAGACGCCCAAAGCGGTGAGGAAAATGGCCATGGCGCTAGGGCCGGTGTTG
                      ____________________________________________________________
consensus             CCCCAAGAGAAGACGCCCAAAGCGGTGAGGAAAATGGCCATGGCGCTAGGGCCGGTGTTG
 
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JMFS161A12+           GGGATCCGGCGGGCGAAACGGACCGGA                                 
JMFF041E06+           GGGATCCGGCGGGCGAAACGGACCGGAGCGAAACCTCCAGGCGGCGGACCATCCTGAAGA
                      ____________________________________________________________
consensus             GGGATCCGGCGGGCGAAACGGACCGGAGCGAAACCTCCAGGCGGCGGACCATCCTGAAGA
 
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JMFF041E06+           AGCGGCATGTCCTTCACGCTGGCCATGCCAGGCTTCTTCCTTATCATTGCCTCCGTCATA
                      ____________________________________________________________
consensus             AGCGGCATGTCCTTCACGCTGGCCATGCCAGGCTTCTTCCTTATCATTGCCTCCGTCATA
 
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JMFF041E06+           TTTGCTAGGGTTTCTCAATGCCGGAGCTCAGCTTAGCAACAGAGGAGAAATGGATTAAAC
                      ____________________________________________________________
consensus             TTTGCTAGGGTTTCTCAATGCCGGAGCTCAGCTTAGCAACAGAGGAGAAATGGATTAAAC