Contig 011603:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001K15Sequence532011603 (8)ref|XP_006341470.1|3e-92PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Solanum tuberosum]739011142 (9)emb|CDO98302.1|3e-96unnamed protein product [Coffea canephora]
JMFF022K01Sequence477011603 (8)ref|XP_006341470.1|7e-81PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Solanum tuberosum]741011142 (9)emb|CDO98302.1|2e-102unnamed protein product [Coffea canephora]
JMFF031L18Sequence571011603 (8)ref|XP_009614005.1|7e-102PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Nicotiana tomentosiformi723011142 (9)emb|CDO98302.1|4e-101unnamed protein product [Coffea canephora]
JMFF035J07Sequence573011603 (8)ref|XP_009614005.1|1e-102PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Nicotiana tomentosiformi599011142 (9)emb|CDO98302.1|3e-68unnamed protein product [Coffea canephora]
JMFF041A17Sequence654011603 (8)ref|XP_006341470.1|8e-122PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Solanum tuberosum]567011142 (9)emb|CDO98302.1|2e-53unnamed protein product [Coffea canephora]
JMSF015E05Sequence527011603 (8)ref|XP_006341470.1|6e-94PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Solanum tuberosum]752011142 (9)emb|CDO98302.1|1e-108unnamed protein product [Coffea canephora]
JMSF037F16Sequence626011603 (8)ref|XP_006341470.1|1e-115PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Solanum tuberosum]713011142 (9)emb|CDO98302.1|5e-102unnamed protein product [Coffea canephora]
JMSF037H21Sequence679011603 (8)ref|XP_006341470.1|2e-130PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Solanum tuberosum]761011142 (9)emb|CDO98302.1|1e-101unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF037H21+                                                TTGAGCTGTCTCAGGACGCAAGT
                      ____________________________________________________________
consensus                                                  TTGAGCTGTCTCAGGACGCAAGT
 
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JMSF037H21+           ACCCAGGGCTCAAGCCAGATGGCCCAATTGAAGTTTGGAACATTAGATTGAAAGGATATG
JMSF037F16+                                           GTTTGGAACATTAGATTGAAAGGATATG
JMFF041A17+                 GGCTCAAGCCAGATGGCCCAATTGAAGTTTGGAACATTAGATTGAAAGGATATG
                      ____________________________________________________________
consensus             ACCCAGGGCTCAAGCCAGATGGCCCAATTGAAGTTTGGAACATTAGATTGAAAGGATATG
 
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JMSF037H21+           GAGCGGAGAGAGGGTTCTTGGTATCTGGAGCAGTAATACCATAGTCCTTAATTTTTGCAC
JMFF035J07+                                 ATCTGGAGCAGTAATACCATAGTCCTTAATTTTTGCAC
JMSF037F16+           GAGCGGAGAGAGGGTTCTTGGTATCTGGAGCAGTAATACCATAGTCCTTAATTTTTGCAC
JMSF015E05+                                                                   GCAC
JMFF031L18+                                   CTGGAGCAGTAATACCATAGTCCTTAATTTTTGCAC
JMFF041A17+           GAGCGGAGAGAGGGTTCTTGGTATCTGGAGCAGTAATACCATAGTCCTTAATTTTTGCAC
                      ____________________________________________________________
consensus             GAGCGGAGAGAGGGTTCTTGGTATCTGGAGCAGTAATACCATAGTCCTTAATTTTTGCAC
 
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JMSF037H21+           CAAGCTCTTCAGCAGAGAGATCATCCAACACAGCAAGTACATGCCTGTACTCTGCTACTT
JMFF035J07+           CAAGCTCTTCAGCAGAGAGATCATCCAACACAGCAAGTACATGCCTGTACTCTGCTACTT
JMSF037F16+           CAAGCTCTTCAGCAGAGAGATCATCCAACACAGCAAGTACATGCCTGTACTCTGCTACTT
JMFF001K15+              GCTCTTCAGCAGAGAGATCATCCAACACAGCAAGTACATGCCTGTACTCTGCTACTT
JMSF015E05+           CAAGCTCTTCAGCAGAGAGATCATCCAACACAGCAAGTACATGCCTGTACTCTGCTACTT
JMFF022K01+                                                                     TT
JMFF031L18+           CAAGCTCTTCAGCAGAGAGATCATCCAACACAGCAAGTACATGCCTGTACTCTGCTACTT
JMFF041A17+           CAAGCTCTTCAGCAGAGAGATCATCCAACACAGCAAGTACATGCCTGTACTCTGCTACTT
                      ____________________________________________________________
consensus             CAAGCTCTTCAGCAGAGAGATCATCCAACACAGCAAGTACATGCCTGTACTCTGCTACTT
 
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JMSF037H21+           TATCAGCAGGAAGATTAGGATCTCTCTCAAGCTTCTCGTTGCAAAAATCCTTGAGCAAAT
JMFF035J07+           TATCAGCAGGAAGATTAGGATCTCTCTCAAGCTTCTCGTTGCAAAAATCCTTGAGCAAAT
JMSF037F16+           TATCAGCAGGAAGATTAGGATCTCTCTCAAGCTTCTCGTTGCAAAAATCCTTGAGCAAAT
JMFF001K15+           TATCAGCAGGAAGATTAGGATCTCTCTCAAGCTTCTCGTTGCAAAAATCCTTGAGCAAAT
JMSF015E05+           TATCAGCAGGAAGATTAGGATCTCTCTCAAGCTTCTCGTTGCAAAAATCCTTGAGCAAAT
JMFF022K01+           TATCAGCAGGAAGATTAGGATCTCTCTCAAGCTTCTCGTTGCAAAAATCCTTGAGCAAAT
JMFF031L18+           TATCAGCAGGAAGATTAGGATCTCTCTCAAGCTTCTCGTTGCAAAAATCCTTGAGCAAAT
JMFF041A17+           TATCAGCAGGAAGATTAGGATCTCTCTCAAGCTTCTCGTTGCAAAAATCCTTGAGCAAAT
                      ____________________________________________________________
consensus             TATCAGCAGGAAGATTAGGATCTCTCTCAAGCTTCTCGTTGCAAAAATCCTTGAGCAAAT
 
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JMSF037H21+           GATCAGCACGATAACAAACTCCAGTCTTTTCATCTTTCACCATGAGATCAGTGAACTTCT
JMFF035J07+           GATCAGCACGATAACAAACTCCAGTCTTTTCATCTTTCACCATGAGATCAGTGAACTTCT
JMSF037F16+           GATCAGCACGATAACAAACTCCAGTCTTTTCATCTTTCACCATGAGATCAGTGAACTTCT
JMFF001K15+           GATCAGCACGATAACAAACTCCAGTCTTTTCATCTTTCACCATGAGATCAGTGAACTTCT
JMSF015E05+           GATCAGCACGATAACAAACTCCAGTCTTTTCATCTTTCACCATGAGATCAGTGAACTTCT
JMFF022K01+           GATCAGCACGATAACAAACTCCAGTCTTTTCATCTTTCACCATGAGATCAGTGAACTTCT
JMFF031L18+           GATCAGCACGATAACAAACTCCAGTCTTTTCATCTTTCACCATGAGATCAGTGAACTTCT
JMFF041A17+           GATCAGCACGATAACAAACTCCAGTCTTTTCATCTTTCACCATGAGATCAGTGAACTTCT
                      ____________________________________________________________
consensus             GATCAGCACGATAACAAACTCCAGTCTTTTCATCTTTCACCATGAGATCAGTGAACTTCT
 
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JMSF037H21+           CAACATGGCCAGATGCCTTGAGCACAACCTCTGGTGTTACACATGGGCAATCCACTTCAA
JMFF035J07+           CAACATGGCCAGATGCCTTGAGCACAACCTCTGGTGTTACACATGGGCAATCCACTTCAA
JMSF037F16+           CAACATGGCCAGATGCCTTGAGCACAACCTCTGGTGTTACACATGGGCAATCCACTTCAA
JMFF001K15+           CAACATGGCCAGATGCCTTGAGCACAACCTCTGGTGTTACACATGGGCAATCCACTTCAA
JMSF015E05+           CAACATGGCCAGATGCCTTGAGCACAACCTCTGGTGTTACACATGGGCAATCCACTTCAA
JMFF022K01+           CAACATGGCCAGATGCCTTGAGCACAACCTCTGGTGTTACACATGGGCAATCCACTTCAA
JMFF031L18+           CAACATGGCCAGATGCCTTGAGCACAACCTCTGGTGTTACACATGGGCAATCCACTTCAA
JMFF041A17+           CAACATGGCCAGATGCCTTGAGCACAACCTCTGGTGTTACACATGGGCAATCCACTTCAA
                      ____________________________________________________________
consensus             CAACATGGCCAGATGCCTTGAGCACAACCTCTGGTGTTACACATGGGCAATCCACTTCAA
 
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JMSF037H21+           GCATGTTCTCTTCAAGAACAAAATGCTGACGCCAGAAGGCGAGGACATTGGACTTGACGG
JMFF035J07+           GCATGTTCTCTTCAAGAACAAAATGCTGACGCCAGAAGGCGAGGACATTGGACTTGACGG
JMSF037F16+           GCATGTTCTCTTCAAGAACAAAATGCTGACGCCAGAAGGCGAGGACATTGGACTTGACGG
JMFF001K15+           GCATGTTCTCTTCAAGAACAAAATGCTGACGCCAGAAGGCGAGGACATTGGACTTGACGG
JMSF015E05+           GCATGTTCTCTTCAAGAACAAAATGCTGACGCCAGAAGGCGAGGACATTGGACTTGACGG
JMFF022K01+           GCATGTTCTCTTCAAGAACAAAATGCTGACGCCAGAAGGCGAGGACATTGGACTTGACGG
JMFF031L18+           GCATGTTCTCTTCAAGAACAAAATGCTGACGCCAGAAGGCGAGGACATTGGACTTGACGG
JMFF041A17+           GCATGTTCTCTTCAAGAACAAAATGCTGACGCCAGAAGGCGAGGACATTGGACTTGACGG
                      ____________________________________________________________
consensus             GCATGTTCTCTTCAAGAACAAAATGCTGACGCCAGAAGGCGAGGACATTGGACTTGACGG
 
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JMSF037H21+           CGCAACCGGGAGGACCGTAGTCGTAGAGGCCGGCAACGCCGCGGTAGATCTTGAAGGAAG
JMFF035J07+           CGCAACCGGGAGGACCGTAGTCGTAGAGGCCGGCAACGCCGCGGTAGATCTTGAAGGAAG
JMSF037F16+           CGCAACCGGGAGGACCGTAGTCGTAGAGGCCGGCAACGCCGCGGTAGATCTTGAAGGAAG
JMFF001K15+           CGCAACCGGGAGGACCGTAGTCGTAGAGGCCGGCAACGCCGCGGTAGATCTTGAAGGAAG
JMSF015E05+           CGCAACCGGGAGGACCGTAGTCGTAGAGGCCGGCAACGCCGCGGTAGATCTTGAAGGAAG
JMFF022K01+           CGCAACCGGGAGGACCGTAGTCGTAGAGGCCGGCAACGCCGCGGTAGATCTTGAAGGAAG
JMFF031L18+           CGCAACCGGGAGGACCGTAGTCGTAGAGGCCGGCAACGCCGCGGTAGATCTTGAAGGAAG
JMFF041A17+           CGCAACCGGGAGGACCGTAGTCGTAGAGGCCGGCAACGCCGCGGTAGATCTTGAAGGAAG
                      ____________________________________________________________
consensus             CGCAACCGGGAGGACCGTAGTCGTAGAGGCCGGCAACGCCGCGGTAGATCTTGAAGGAAG
 
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JMSF037H21+           GGATGTAGAAGAGGCGGCGCTCGAGAGTGTTGGTAACGGCTTGACGAAATGTCTCTCTGT
JMFF035J07+           GGATGTAGAAGAGGCGGCGCTCGAGAGTGTTGGTAACGGCTTGACGAAATGCCTCTCTGT
JMSF037F16+           GGATGTAGAAGAGGCGGCGCTCGAGAGTGTTGGTAACGGCTTGACGAAATGCCTCTCTGT
JMFF001K15+           GGATGTAGAAGAGGCGGCGCTCGAGAGTGTTGGTAACGGCTTGACGAAATGCCTCTCTGT
JMSF015E05+           GGATGTAGAAGAGGCGGCGCTCGAGAGTGTTGGTAACGGCTTGACGAAATGCCTCTCTGT
JMFF022K01+           GGATGTAGAAGAGGCGGCGCTCGAGAGTGTTGGTAACGGCTTGACGAAATGCCTCTCTGT
JMFF031L18+           GGATGTAGAAGAGGCGGCGCTCGAGAGTGTTGGTAACGGCTTGACGAAATGCCTCTCTGT
JMFF041A17+           GGATGTAGAAGAGGCGGCGCTCGAGAGTGTTGGTAACGGCTTGACGAAATGCCTCTCTGT
                      ____________________________________________________________
consensus             GGATGTAGAAGAGGCGGCGCTCGAGAGTGTTGGTAACGGCTTGACGAAATGCCTCTCTGT
 
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JMSF037H21+           TCTGCGCCTCTCGAGCCGCGTCCATCTCTGAATCAATCGCCGGAGAAAAATGCGAACGGC
JMFF035J07+           TCTGCGCCTCTCGAGCCGCGTCCATCTCTGAATCAATCGCCGGAGAAAAATGCGAACGGC
JMSF037F16+           TCTGCGCCTCTCGAGCCGCGTCCATCTCTGAATCAATCGCCGGAGAAAAATGCGAACGGC
JMFF001K15+           TCTGCGCCTCTCGAGCCGCGTCCATCTCTGAATCAATCGCCGGAGAAAAATGCGAACGGC
JMSF015E05+           TCTGCGCCTCTCGAGCCGCGTCCATCTCTGAATCAATCGCCGGAGAAAAATGCGAACGGC
JMFF022K01+           TCTGCGCCTCTCGAGCCGCGTCCATCTCTGAATCAATCGCCGGAGAAAAATGCGAACGGC
JMFF031L18+           TCTGCGCCTCTCGAGCCGCGTCCATCTCTGAATCAATCGCCGGAGAAAAATGCGAACGGC
JMFF041A17+           TCTGCGCCTCTCGAGCCGCGTCCATCTCTGAATCAATCGCCGGAGAAAAATGCGAACGGC
                      ____________________________________________________________
consensus             TCTGCGCCTCTCGAGCCGCGTCCATCTCTGAATCAATCGCCGGAGAAAAATGCGAACGGC
 
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JMSF037H21+           GGCGCGAGCTGAGAGTGTAGTGCGGATAGAATATACCAATGCGGTAGTGAAAGTC     
JMFF035J07+           GGCGCGAGCTGAGAGTGTAGTGCGGATAGAATATACCAATGCGGTAGTGAAAGTC     
JMSF037F16+           GGCGCGAGCTGAGAGTGTAGTGCGGATAGAATATACCAATGCGGTAGTGAAAGTC     
JMFF001K15+           GGCGCGAGCTGAGAGTGTAGTGCGGATAGAATATACCAATGCGGTAGTGAAAGTC     
JMSF015E05+           GGCGCGAGCTGAGAGTGTAGTGCGGATAGAATATACCAATGC                  
JMFF022K01+           GGCGCGAGCTGAGAGTGTAGTGCGGATAGAATATACCAATGCGGTAGTGAAAGTC     
JMFF031L18+           GGCGCGAGCTGAGAGTGTAGTGCGGATAGAATATACCAATGCGGTAGTGAAAGTC     
JMFF041A17+           GGCGCGAGCTGAGAGTGTAGTGCGGATAGAATATACCAATGCGGTAGTGAAAGTCGGGGA
                      ____________________________________________________________
consensus             GGCGCGAGCTGAGAGTGTAGTGCGGATAGAATATACCAATGCGGTAGTGAAAGTCGGGGA