Contig 011602:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF027A08Sequence578011602 (6)gb|KJB61503.1|3e-93hypothetical protein B456_009G362500 [Gossypium raimondii]753006935 (4)gb|KHN18614.1|8e-103Putative rhamnose biosynthetic enzyme 1 [Glycine soja]
JMFF040O12Sequence584011602 (6)gb|KJB61503.1|7e-95hypothetical protein B456_009G362500 [Gossypium raimondii]759006935 (4)gb|KHN18614.1|2e-103Putative rhamnose biosynthetic enzyme 1 [Glycine soja]
JMFF041A16Sequence597011602 (6)gb|KJB61503.1|3e-98hypothetical protein B456_009G362500 [Gossypium raimondii]240006935 (4)
JMFF042A20Sequence636011602 (6)gb|KJB45830.1|1e-143hypothetical protein B456_007G332000 [Gossypium raimondii]562017012ref|XP_011082806.1|1e-50PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucos
JMFF042O07Sequence653011602 (6)gb|KJB61503.1|3e-113hypothetical protein B456_009G362500 [Gossypium raimondii]621006935 (4)gb|AAC32137.1|2e-65hypothetical protein [Picea mariana]
JMFS070C09Sequence631011602 (6)gb|KJB61503.1|2e-104hypothetical protein B456_009G362500 [Gossypium raimondii]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF042A20+                                    CATATATCTCTAGCAACATCGGTCACTCTCCTCTC
                      ____________________________________________________________
consensus                                      CATATATCTCTAGCAACATCGGTCACTCTCCTCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF042A20+           CTTCTTTGTCCCGATGTTGTATACATGACCAAGCTCTCCCCTGTGAAGAACCACCTCGAA
                      ____________________________________________________________
consensus             CTTCTTTGTCCCGATGTTGTATACATGACCAAGCTCTCCCCTGTGAAGAACCACCTCGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF042A20+           AGCCTCTGCAACATCCTCACAGTAAAGATAGCTCCTGACGTTAGAACCATCTCCATGAAT
                      ____________________________________________________________
consensus             AGCCTCTGCAACATCCTCACAGTAAAGATAGCTCCTGACGTTAGAACCATCTCCATGAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF042A20+           AGGGAGAGTCTTCCCCTGCATGGCTAAAAGAATGAACTTAGGGATTAGCTTCTCAGGGAA
                      ____________________________________________________________
consensus             AGGGAGAGTCTTCCCCTGCATGGCTAAAAGAATGAACTTAGGGATTAGCTTCTCAGGGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF042A20+           CTGGTTGGGGCCGTACACATTATTCCCTCGGGTGGTTATTACAGGCAAGCCGTATGACCT
JMFS070C09+                  GGGCCGTACACATTATTCCCTCGGGTGGTTA-TACAGGCAAGCCGTATGACCT
JMFF042O07+                TGGGGCCGTACACATTATTCCCTCGGGTGGTTATTACAGGCAAGCCGTATGACCT
JMFF041A16+                                                                     CT
                      ____________________________________________________________
consensus             CTGGTTGGGGCCGTACACATTATTCCCTCGGGTGGTTATTACAGGCAAGCCGTATGACCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF042A20+           TCCATAAGCCATAACCAGCATTTCTGCCCCGGCTTTTGTAGCAGAATATGGGTTCGTGGG
JMFS070C09+           TCCATAAGCCATAACCAGCATTTCTGCCCCGGCTTTTGTAGCAGAATATGGGTTCGTGGG
JMFF042O07+           TCCATAAGCCATAACCAGCATTTCTGCCCCGGCTTTTGTAGCAGAATATGGGTTCGTGGG
JMFF041A16+           TCCATAAGCCATAACCAGCATTTCTGCCCCGGCTTTTGTAGCAGAATATGGGTTCGTGGG
JMFF027A08+                                TTCTGCCCCGGCTTTTGTAGCAGAATATGGGTTCGTGGG
JMFF040O12+                        ACCAGCATTTCTGCCCCGGCTTTTGTAGCAGAATATGGGTTCGTGGG
                      ____________________________________________________________
consensus             TCCATAAGCCATAACCAGCATTTCTGCCCCGGCTTTTGTAGCAGAATATGGGTTCGTGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF042A20+           AAGAAGCTGCGAGGCTTCATGGTTTCCCACGATGGCGTCCTCCTCAGTCTCCCCATAGAC
JMFS070C09+           AAGAAGCTGCGAGGCTTCATGGTTTCCCACGATGGCGTCCTCCTCAGTCTCCCCATAGAC
JMFF042O07+           AAGAAGCTGCGAGGCTTCATGGTTTCCCACGATGGCGTCCTCCTCAGTCTCCCCATAGAC
JMFF041A16+           AAAAAGCTGCGAGGCTTCATGGTTTCCCACGATGGCATCCTCCTCAGTCTCCCCATAGAC
JMFF027A08+           AAGAAGCTGCGAGGCTTCATGGTTTCCCACGATGGCGTCCTCCTCAGTCTCCCCATAGAC
JMFF040O12+           AAGAAGCTGCGAGGCTTCATGGTTTCCCACGATGGCGTCCTCCTCAGTCTCCCCATAGAC
                      ____________________________________________________________
consensus             AAGAAGCTGCGAGGCTTCATGGTTTCCCACGATGGCGTCCTCCTCAGTCTCCCCATAGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF042A20+           CTCATCCGTGCTGACATGAATGAACCGCTTGATCTGACCAGTAACCTTGCAGGCCTCCAA
JMFS070C09+           CTCATCCGTGCTGACATGAATGAACCGCTTGATCTGACCAGTAACCTTGCAGGCCTCCAA
JMFF042O07+           CTCATCCGTGCTGACATGAATGAACCGCTTGATCTGACCAGTAACCTTGCAGGCCTCCAA
JMFF041A16+           CTCATCCGTGCTGACATGAATGAACCGCTTGATCTGACCAGTAACCTTGCAGGCCTCCAA
JMFF027A08+           CTCATCCGTGCTGACATGAATGAACCGCTTGATCTGACCAGTAACCTTGCAGGCCTCCAA
JMFF040O12+           CTCATCCGTGCTGACATGAATGAACCGCTTGATCTGACCAGTAACCTTGCAGGCCTCCAA
                      ____________________________________________________________
consensus             CTCATCCGTGCTGACATGAATGAACCGCTTGATCTGACCAGTAACCTTGCAGGCCTCCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF042A20+           GAGAACATGAGTGCCATAAATGTTGTTCTTGGTGAACTCAAAGCTGTTGCCAAAGGAGTT
JMFS070C09+           GAGAACATGAGTGCCATAAATGTTGTTCTTGGTGAACTCAAAGCTGTTGCCAAAGGAGTT
JMFF042O07+           GAGAACATGAGTGCCATAAATGTTGTTCTTGGTGAACTCAAAGCTGTTGCCAAAGGAGTT
JMFF041A16+           GAGAACATGAGTGCCATAAATGTTGTTCTTGGTGAACTCAAAGCTGTTGCCAAAGGAGTT
JMFF027A08+           GAGAACATGAGTGCCATAAATGTTGTTCTTGGTGAACTCAAAGCTGTTGCCAAAGGAGTT
JMFF040O12+           GAGAACATGAGTGCCATAAATGTTGTTCTTGGTGAACTCAAAGCTGTTGCCAAAGGAGTT
                      ____________________________________________________________
consensus             GAGAACATGAGTGCCATAAATGTTGTTCTTGGTGAACTCAAAGCTGTTGCCAAAGGAGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF042A20+           GTCAACATGGGTCTGAGCTGCAAAATGCATTATGGTGTCAATGGACTCGGTGACGAGAAT
JMFS070C09+           GTCAACATGGGTCTGAGCTGCAAAATGCATTATGGTGTCAATGGACTCGGTGACGAGAAT
JMFF042O07+           GTCAACATGGGTCTGAGCTGCAAAATGCATTATGGTGTCAATGGACTCGGTGACGAGAAT
JMFF041A16+           GTCAACATGGGTCTGAGCCGCAAAATGCATTATGGTGTCAATGGACTCGGTGACGAGAAT
JMFF027A08+           GTCAACATGGGTCTGAGCTGCAAAATGCATTATGGTGTCAATGGACTCGGTGACGAGAAT
JMFF040O12+           GTCAACATGGGTCTGAGCTGCAAAATGCATTATGGTGTCAATGGACTCGGTGACGAGAAT
                      ____________________________________________________________
consensus             GTCAACATGGGTCTGAGCTGCAAAATGCATTATGGTGTCAATGGACTCGGTGACGAGAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF042A20+           GTGGTTTACAAGATCAGCACTCCCGATATCTCCCTTGACAAACTTGAAGTTAGGGGACGA
JMFS070C09+           GTGGTTTACAAGATCAGCACTCCCGATATCTCCCTTGACAAACTTGAAGTTAGGGGACGA
JMFF042O07+           GTGGTTTACAAGATCAGCACTCCCGATATCTCCCTTGACAAACTTGAAGTTAGGGGACGA
JMFF041A16+           GTGGTTTACAAGATCAGCACTCCCGATATCTCCCTTGACAAACTTGAAGTTAGGGGACGA
JMFF027A08+           GTGGTTTACAAGATCAGCACTCCCGATATCTCCCTTGACAAACTTGAAGTTAGGGGACGA
JMFF040O12+           GTGGTTTACAAGATCAGCACTCCCGATATCTCCCTTGACAAACTTGAAGTTAGGGGACGA
                      ____________________________________________________________
consensus             GTGGTTTACAAGATCAGCACTCCCGATATCTCCCTTGACAAACTTGAAGTTAGGGGACGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF042A20+           G                                                           
JMFS070C09+           GCTCGAGGGCAGAAGGTTCTTGAGGTTTGAGCAGTAGTCAAGCTTATCAAGAACAACAAT
JMFF042O07+           GCTCGAGGGCAGAAGGTTCTTGAGGTTTGAGCAGTAGTCAAGCTTATCAAGAACAACAAT
JMFF041A16+           GCTCGAGGGCAGAAGGTTCTTGAGGTTTGAGCAGTAGTCAAGCTTATCAAGAACAACAAT
JMFF027A08+           GCTCGAGGGCAGAAGGTTCTTGAGGTTTGAGCAGTAGTCAAGCTTATCAAGAACAACAAT
JMFF040O12+           GCTCGAGGGCAGAAGGTTCTTGAGGTTTGAGCAGTAGTCAAGCTTATCAAGAACAACAAT
                      ____________________________________________________________
consensus             GCTCGAGGGCAGAAGGTTCTTGAGGTTTGAGCAGTAGTCAAGCTTATCAAGAACAACAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS070C09+           CTTGTAATCTGGGTAGTTCCTGATAAGCCTGTTTGCAACATGGGATGCAATGAATCCGGC
JMFF042O07+           CTTGTAATCTGGGTAGTTCCTGATAAGCCTGTTTGCAACATGGGATGCAATGAATCCGGC
JMFF041A16+           CTTGTAATCTGGGTAGTTCCTGATAAGCCTGTTTGCAACATGGGATGCAATGAATCCGGC
JMFF027A08+           CTTGTAATCTGGGTAGTTCCTGATAAGCCTGTTTGCAACATGGGATGCAATGAATCCGGC
JMFF040O12+           CTTGTAATCTGGGTAGTTCCTGATAAGCCTGTTTGCAACATGGGATGCAATGAATCCGGC
                      ____________________________________________________________
consensus             CTTGTAATCTGGGTAGTTCCTGATAAGCCTGTTTGCAACATGGGATGCAATGAATCCGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS070C09+           AGCTCCGGTGACAAGGATGTTCTTTGGGGTATAAGCTTCCATCTTAACCGAGCTTAGCTG
JMFF042O07+           AGCTCCGGTGACAAGGATGTTCTTTGGGGTATAAGCTTCCATCTTAACCGAG---AGCTG
JMFF041A16+           AGCTCCGGTGACAAGGATGTTCTTTGGGGTATAAGCTTCCATCTTAACCGAGCTTAGCTG
JMFF027A08+           AGCTCCGGTGACAAGGATGTTCTTTGGGGTATAAGCTTCCATCTTAACCGAGCTTAGCTG
JMFF040O12+           AGCTCCGGTGACAAGGATGTTCTTTGGGGTATAAGCTTCCATCTTAACCGAG---AGCTG
                      ____________________________________________________________
consensus             AGCTCCGGTGACAAGGATGTTCTTTGGGGTATAAGCTTCCATCTTAACCGAGCTTAGCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS070C09+           CCTGGTGAAGTCAGCTCGGATGTGATGAGGTTGAAGAAG                     
JMFF042O07+           CCTGGTGAAGTCAGCTCGGATGTGATGAGGTTGAAGAAGCTAAGGAGCT           
JMFF041A16+           CCTGGTGAAGTCAGCTCGGATGTGATGAGGTTGAAGAAGCTAAGGAGCT           
JMFF027A08+           CCTGGTGAAGTCAGCTCGGATGTGATGAGGTTGAAGAAGCTAAGGAGCTGAGGAG     
JMFF040O12+           CCTGGTGAAGTCAGCTCGGATGTGATGAGGTTGAAGAAGCTAAGGAGCTGAGGAGTGAGG
                      ____________________________________________________________
consensus             CCTGGTGAAGTCAGCTCGGATGTGATGAGGTTGAAGAAGCTAAGGAGCTGAGGAGTGAGG