Contig 011601:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF040G12Sequence554011601 (2)ref|XP_004234204.1|1e-76PREDICTED: reticulon-like protein B2 [Solanum lycopersicum]762011601 (2)ref|XP_009626480.1|281PREDICTED: reticulon-like protein B2 isoform X1 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMFF040G12-                                               TTGCAAGCAAAACCTACCGTAGG
                      ____________________________________________________________
consensus                                                  TTGCAAGCAAAACCTACCGTAGG
 
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rJMFF040G12-          CACTAATTTTCAGAGGAAAAGATGAACCTTGCTCTCTGAATACACTGCTGTTGAGAGCCA
                      ____________________________________________________________
consensus             CACTAATTTTCAGAGGAAAAGATGAACCTTGCTCTCTGAATACACTGCTGTTGAGAGCCA
 
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rJMFF040G12-          TGAAGCTGTCAAGAACATGGCAAAACAAATCTCCAAAGAAAAACTAAACTTATAAAATGA
                      ____________________________________________________________
consensus             TGAAGCTGTCAAGAACATGGCAAAACAAATCTCCAAAGAAAAACTAAACTTATAAAATGA
 
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rJMFF040G12-          GAGTACTTTTAGCTTGCTTATAGACCATTACAAGTCAAAACAAAGCCATAAAACGACGGC
                      ____________________________________________________________
consensus             GAGTACTTTTAGCTTGCTTATAGACCATTACAAGTCAAAACAAAGCCATAAAACGACGGC
 
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rJMFF040G12-          TCTAAAACAGTAGATCCTCACAACATCTTGAAAGAAACTTCAATGTGAAACACCATCTCT
                      ____________________________________________________________
consensus             TCTAAAACAGTAGATCCTCACAACATCTTGAAAGAAACTTCAATGTGAAACACCATCTCT
 
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rJMFF040G12-          CTTATTAGGCGAGCTTCTTGTCCTTCAGGGGGCCTTTTGGAATTTTACTCAGATACTTTT
                      ____________________________________________________________
consensus             CTTATTAGGCGAGCTTCTTGTCCTTCAGGGGGCCTTTTGGAATTTTACTCAGATACTTTT
 
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rJMFF040G12-          CATTAAGCACCGCATATTGCTTCATGATCTCTGCCTCGGCCTTCTCAGCAAAAGCATCGA
                      ____________________________________________________________
consensus             CATTAAGCACCGCATATTGCTTCATGATCTCTGCCTCGGCCTTCTCAGCAAAAGCATCGA
 
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rJMFF040G12-          CTTGATCTTCGTATTTCTCATACAGCATGGGAACTGTGTGCAGCAGCACAACAATCAGGT
                      ____________________________________________________________
consensus             CTTGATCTTCGTATTTCTCATACAGCATGGGAACTGTGTGCAGCAGCACAACAATCAGGT
 
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rJMFF040G12-          AAAACAATGTGAGGAAGTTGAAACTATTCCCCATGACTGACAAAACCCACAAGCCAGCAA
                      ____________________________________________________________
consensus             AAAACAATGTGAGGAAGTTGAAACTATTCCCCATGACTGACAAAACCCACAAGCCAGCAA
 
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rJMFF040G12-          TTACAGCAAGAAATTTCTTCACATCTTTCCCAGATGCAATTTCTCGGAGCACAGCAAGAG
JMFF040G12+                                                         GAGCACAGCAAGAG
                      ____________________________________________________________
consensus             TTACAGCAAGAAATTTCTTCACATCTTTCCCAGATGCAATTTCTCGGAGCACAGCAAGAG
 
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rJMFF040G12-          TTCTATTGATTTCAATTCTCAATGCAGAAGCAACATTAAGGACAGTATCCTGAGGAAGGA
JMFF040G12+           TTCTATTGATTTCAATTCTCAATGCAGAAGCAACATTAAGGACAGTATCCTGAGGAAGGA
                      ____________________________________________________________
consensus             TTCTATTGATTTCAATTCTCAATGCAGAAGCAACATTAAGGACAGTATCCTGAGGAAGGA
 
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rJMFF040G12-          TGACGGATGGGATTTGAGGTGGGGATTTGTTGATGAATGTGGATGCATTTGACCATAGGA
JMFF040G12+           TGACGGATGGGATTTGAGGTGGGGATTTGTTGATGAATGTGGATGCATTTGACCATAGGA
                      ____________________________________________________________
consensus             TGACGGATGGGATTTGAGGTGGGGATTTGTTGATGAATGTGGATGCATTTGACCATAGGA
 
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rJMFF040G12-          ATGATATTGCGAGAGCAAGAATCAAAATGTGGCATACTAGAGTGAGTAAGTGGTATTCCA
JMFF040G12+           ATGATATTGCGAGAGCAAGAATCAAAATGTGGCATACTAGAGTGAGTAAGTGGTATTCCA
                      ____________________________________________________________
consensus             ATGATATTGCGAGAGCAAGAATCAAAATGTGGCATACTAGAGTGAGTAAGTGGTATTCCA
 
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rJMFF040G12-          TCAATTCAAAAAGCACCCA                                         
JMFF040G12+           TCAATTCAAAAAGCACCCAGATAGTAGTGGCAAAACCAACGACAGCACCAGAAACTTTCT
                      ____________________________________________________________
consensus             TCAATTCAAAAAGCACCCAGATAGTAGTGGCAAAACCAACGACAGCACCAGAAACTTTCT
 
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JMFF040G12+           TGTCCCTCCACAGGAAAATATCAGCAGGTTTTCCTCCGCCTAAGACCTTGTGCACGTGTC
                      ____________________________________________________________
consensus             TGTCCCTCCACAGGAAAATATCAGCAGGTTTTCCTCCGCCTAAGACCTTGTGCACGTGTC
 
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JMFF040G12+           TCTCGCGGCCGAAGAGGCGATAGATCTTGGCCTTAACAGCGTCGGCAGATGGCTTGTCGG
                      ____________________________________________________________
consensus             TCTCGCGGCCGAAGAGGCGATAGATCTTGGCCTTAACAGCGTCGGCAGATGGCTTGTCGG
 
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JMFF040G12+           CATGATCGTCCTCGGAATCGGAAGACGAGGAATCGTGGCCTTGCAACTTGTCGCTGATCT
                      ____________________________________________________________
consensus             CATGATCGTCCTCGGAATCGGAAGACGAGGAATCGTGGCCTTGCAACTTGTCGCTGATCT
 
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JMFF040G12+           TTTCCATCACCGTCTCAGCAAGCGAATCGTGGTCTCCGGCGTGATCGGCCATGGGAAGAG
                      ____________________________________________________________
consensus             TTTCCATCACCGTCTCAGCAAGCGAATCGTGGTCTCCGGCGTGATCGGCCATGGGAAGAG
 
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JMFF040G12+           ATGAGATGAAACAGGGGATATTTCAGTCTTTTCGGTCTCGCCTGTGTCCGCTTTGAAATT
                      ____________________________________________________________
consensus             ATGAGATGAAACAGGGGATATTTCAGTCTTTTCGGTCTCGCCTGTGTCCGCTTTGAAATT