Contig 011598:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMFF039M18-                                ATTCTTATTGCAATACTTGTATAAAACAGAAATCAAAA
                      ____________________________________________________________
consensus                                   ATTCTTATTGCAATACTTGTATAAAACAGAAATCAAAA
 
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rJMFF039M18-          CATATATTATCTCGCAAAAATATCAGGTTCAAATTCAAATGCTGATGTTATAG-TTCCGG
rJMSF031O15-                                   GGTTCAAATTCAAATGCTGATGTTATAGTTTCCGG
                      ____________________________________________________________
consensus             CATATATTATCTCGCAAAAATATCAGGTTCAAATTCAAATGCTGATGTTATAGTTTCCGG
 
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rJMFF039M18-          TTACACATCCACAAATATTGACCAAGTCAAATAGGACTTCCGAGTAGATATACTTCATGC
rJMSF031O15-          TTACACATCCACAAATATTGACCAAGTCAAATAGGACTTCCGAGTAGATATACTTCATGC
                      ____________________________________________________________
consensus             TTACACATCCACAAATATTGACCAAGTCAAATAGGACTTCCGAGTAGATATACTTCATGC
 
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rJMFF039M18-          TCCATATTTTGGAGCTTTCCAAAGCTTAAACGCTAATTCATGAAAGTACCTGTCAGTTGG
rJMSF031O15-          TCCATACTTTGGAGCTTTCCAAAGCTTAAACGCTAATTCATGAAAGTACCTGTCAGTTGG
                      ____________________________________________________________
consensus             TCCATATTTTGGAGCTTTCCAAAGCTTAAACGCTAATTCATGAAAGTACCTGTCAGTTGG
 
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rJMFF039M18-          AATTACAAGATTCCCGCCATGCTCTTTAAAATCTTCAAAAGAATATGATTCTACCATATC
rJMSF031O15-          AATTACAAGATTCCCGCCATGCTCTTTAAAATCTTCAAAAGAATATGATTCTACCATATC
                      ____________________________________________________________
consensus             AATTACAAGATTCCCGCCATGCTCTTTAAAATCTTCAAAAGAATATGATTCTACCATATC
 
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rJMFF039M18-          TTTGCGAGTTACACCATCTTGCCATTGAGCAACTAACATTGGGCAATGTTTTCTAACATT
rJMSF031O15-          TTTGCGAGTTACACCATCTTGCCATTGAGCAACTAACATTGGGCAATGTTTTCTAACATT
                      ____________________________________________________________
consensus             TTTGCGAGTTACACCATCTTGCCATTGAGCAACTAACATTGGGCAATGTTTTCTAACATT
 
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rJMFF039M18-          CTCTCGAGGTATTCCTCCTTTTAATGTGTAACTTTGGCGAGGAAAGAGTCTAGAAAGCTC
rJMSF031O15-          CTCTCGAGGTATTCCTCCTTTTAATGTGTAACTTTGGCGAGGAAAGAGTCTAGAAAGCTC
                      ____________________________________________________________
consensus             CTCTCGAGGTATTCCTCCTTTTAATGTGTAACTTTGGCGAGGAAAGAGTCTAGAAAGCTC
 
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rJMFF039M18-          AGGACTATTCTCATGTCTACCGTCGGGAACAGAAAATTTGGAATTTTCATTTTCTAAAAC
rJMSF031O15-          AGGACTATTCTCATGTCTACCGTCGGGAACAGAAAATTTGGAATTTTCATTTTCTAAAAC
                      ____________________________________________________________
consensus             AGGACTATTCTCATGTCTACCGTCGGGAACAGAAAATTTGGAATTTTCATTTTCTAAAAC
 
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rJMFF039M18-          AGCCCCAAAGCTCAATAAGACAGAAAGGTGCAGGTGAGAACCAAGTCCAGTCCCAGGTTG
rJMSF031O15-          AGCCCCAAAGCTCAATAAGACAGAAAGGTGCAGGTGAGAACCAAGTCCAGTCCCAGGTTG
                      ____________________________________________________________
consensus             AGCCCCAAAGCTCAATAAGACAGAAAGGTGCAGGTGAGAACCAAGTCCAGTCCCAGGTTG
 
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rJMFF039M18-          TGCCGTGTTTATTAACTCACCGACCAAACCATTGACATGTTCTATGTCTTCAAGAGTACT
rJMSF031O15-          TGCCGTGTTTATTAACTCACCGACCAAACCATTGACATGTTCTATGTCTTCAAGAGTACT
                      ____________________________________________________________
consensus             TGCCGTGTTTATTAACTCACCGACCAAACCATTGACATGTTCTATGTCTTCAAGAGTACT
 
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rJMFF039M18-          CTTTCGGCTACTACCAACATGAACAATTACTAAATCAAACTGGCTTGTCTCCAAAACCTT
rJMSF031O15-          CTTTCGGCTACTACCAACATGAACAATTACTAAATCAAACTGGCTTGTCTCCAAAACCTT
                      ____________________________________________________________
consensus             CTTTCGGCTACTACCAACATGAACAATTACTAAATCAAACTGGCTTGTCTCCAAAACCTT
 
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rJMFF039M18-          TCCCTCTTGAAATCCTAGTAATTTTAGCAACTCGGAGGCCAAGAGAGATGACTTGACCAC
rJMSF031O15-          TCCCTCTTGAAATCCTAGTAATTTTAGCAACTCGGAGGCCAAGAGAGATGACTTGACCAC
JMFF039M18+                      ATCCTAGTAATTTTAGCAACTCGGAGGCCAAGAGAGATGACTTGACCAC
                      ____________________________________________________________
consensus             TCCCTCTTGAAATCCTAGTAATTTTAGCAACTCGGAGGCCAAGAGAGATGACTTGACCAC
 
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rJMFF039M18-          ATCAAAGCTGCTATGAACTAAATCTTCCAGCTGCAACACGGTGAAGCCAAGGTGACTACA
rJMSF031O15-          ATCAAAGCTGCTATGAACTAAATCTTCCAGCTGCAACACGGTGAAGCCAAGGTGACTACA
JMFF039M18+           ATCAAAGCTGCTATGAACTAAATCTTCCAGCTGCAACACGGTGAAGCCAAGGTGACTACA
                      ____________________________________________________________
consensus             ATCAAAGCTGCTATGAACTAAATCTTCCAGCTGCAACACGGTGAAGCCAAGGTGACTACA
 
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rJMFF039M18-          GAAACCGTTCAAGCTCGAATTATCAGTGACAATAGCAGCTTTCATCCCCAT         
rJMSF031O15-          GAAACCGTTCAGGCTCGAATTATCAGTGACAATAGCAGCTTTCATCCCCATAAACCTCTG
JMFF039M18+           GAAACCGTTCAAGCTCGAATTATCAGTGACAATAGCAGCTTTCATCCCCATAAACCTCTG
                      ____________________________________________________________
consensus             GAAACCGTTCAAGCTCGAATTATCAGTGACAATAGCAGCTTTCATCCCCATAAACCTCTG
 
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rJMSF031O15-          TGA                                                         
JMFF039M18+           TGATACAGTTGGTGTTACAAACTTCTCTTGAGATTTTGCTTCAGAAAGATGTTGTTTATT
                      ____________________________________________________________
consensus             TGATACAGTTGGTGTTACAAACTTCTCTTGAGATTTTGCTTCAGAAAGATGTTGTTTATT
 
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JMFF039M18+           CATTTCATTATAAGCTTCACTCGCATCAAGTAGCTCTGCAAACTCTCTCACTATTCTTCC
                      ____________________________________________________________
consensus             CATTTCATTATAAGCTTCACTCGCATCAAGTAGCTCTGCAAACTCTCTCACTATTCTTCC
 
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JMSF031O15+                        GAAGGAGGAGAGTGAGGGAGAGACAAGAAGCCGCAGCAGGCCTGAGA
JMFF039M18+           ATCCTCATTTTCTGAAGGAGGAGAGTGAGGGAGAGACAAGAAGCCGCAGCAGGCCTGAGA
                      ____________________________________________________________
consensus             ATCCTCATTTTCTGAAGGAGGAGAGTGAGGGAGAGACAAGAAGCCGCAGCAGGCCTGAGA
 
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JMSF031O15+           AGCGAGAGAATGGAGATGGGTATGAGATGGAGTGAGGAATCGCGCCATCCTGTCACCGTA
JMFF039M18+           AGCGAGAGAATGGAGATGGGTATGAGATGGAGTGAGGAATCGCGCCATCCTGTCACCGTA
                      ____________________________________________________________
consensus             AGCGAGAGAATGGAGATGGGTATGAGATGGAGTGAGGAATCGCGCCATCCTGTCACCGTA
 
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JMSF031O15+           CAGCACCAGAGCTCTGCTAGGCTGGTCCNCCATTGCTATTGCTTGAAAGAAATTGGGAAA
JMFF039M18+           CAGCACCAGAGCTCTGCTAGGCTGGTCCGCCATTGCTATTGCTTGAAAGAAATTGGGAAA
                      ____________________________________________________________
consensus             CAGCACCAGAGCTCTGCTAGGCTGGTCCGCCATTGCTATTGCTTGAAAGAAATTGGGAAA
 
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JMSF031O15+           AATCTT                                                      
JMFF039M18+           AATCTTAGAAGGCCATAAACTGAGAGCCAATTAAAGAGTTTTTAATTAATAATTACACAT
                      ____________________________________________________________
consensus             AATCTTAGAAGGCCATAAACTGAGAGCCAATTAAAGAGTTTTTAATTAATAATTACACAT