Contig 011593:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF037J17Sequence562011593 (4)733000420 (2)ref|XP_009627095.1|4e-87PREDICTED: pumilio homolog 3-like isoform X2 [Nicotiana tomentosiformis]
JMFS023G03Sequence559011593 (4)ref|XP_009631472.1|4e-04PREDICTED: pumilio homolog 1-like isoform X1 [Nicotiana tomentosiformis]
JMFS038A05Sequence551011593 (4)ref|XP_009384840.1|2e-12PREDICTED: pumilio homolog 2-like [Musa acuminata subsp. malaccensis]
JMFS137G10Sequence556011593 (4)ref|XP_010658540.1|4e-23PREDICTED: pumilio homolog 2-like [Vitis vinifera]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS137G10+                                  TGATAATTCAGTCCGGAAATGATCAAATTGAGACTCG
                      ____________________________________________________________
consensus                                    TGATAATTCAGTCCGGAAATGATCAAATTGAGACTCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS137G10+           GGAGACTCAATGATAGCATCCACCGCGTGGCTGGCAGGATGAGATGGATGTCTTGAAGTA
                      ____________________________________________________________
consensus             GGAGACTCAATGATAGCATCCACCGCGTGGCTGGCAGGATGAGATGGATGTCTTGAAGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS137G10+           GGTATCGTGTGGCTTATATCATCCTGAACAATCTCTGCTATGCTCTTCTGCTGACTTCCT
                      ____________________________________________________________
consensus             GGTATCGTGTGGCTTATATCATCCTGAACAATCTCTGCTATGCTCTTCTGCTGACTTCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS137G10+           AAACCCAGTCCTGGCAATCCAATAAGTCCACTGCCTCCCCAGTCCTTCTGTGCCTCACTT
                      ____________________________________________________________
consensus             AAACCCAGTCCTGGCAATCCAATAAGTCCACTGCCTCCCCAGTCCTTCTGTGCCTCACTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS137G10+           CCATTTTCTAGATTCTTCCCAGAAAATCCCATTCCCATTGAAATTTGGGACGTTTCAACC
                      ____________________________________________________________
consensus             CCATTTTCTAGATTCTTCCCAGAAAATCCCATTCCCATTGAAATTTGGGACGTTTCAACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS137G10+           CCTCTACTCACTTTCCTTCTGTCTCCAATTCCCCCGAGCCTCACGTGACTCCCACTACCG
JMFS038A05+                                                        TGACTCCCACTACCG
                      ____________________________________________________________
consensus             CCTCTACTCACTTTCCTTCTGTCTCCAATTCCCCCGAGCCTCACGTGACTCCCACTACCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS137G10+           CCGCCGCCGCCATTAATACCTCCACCGCCGCCGCCCTGCAGCCTCTGCGCCGACCGCCAG
JMFS038A05+           CCGCCGCCGCCATTAATACCTCCACCGCCGCCGCCCTGCAGCCTTTGCGCCGACCGCCAG
                      ____________________________________________________________
consensus             CCGCCGCCGCCATTAATACCTCCACCGCCGCCGCCCTGCAGCCTTTGCGCCGACCGCCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS137G10+           TCCTCCTTGGACAAAAGAGGCGGCGGGAGCCGAGGGTTCACGTTCCCGTTAGAATAGTAA
JMFS038A05+           TCCTCCTTGGACAAAAGAGGCGGCGGGAGCCGAGGGTTCACGTTCCCGTTAGAATAGTAA
                      ____________________________________________________________
consensus             TCCTCCTTGGACAAAAGAGGCGGCGGGAGCCGAGGGTTCACGTTCCCGTTAGAATAGTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS137G10+           TACGAAACATACGCCGCATTAGACCTCATCTCCTCCTCCGAAACTCCATTCAAATCACCG
JMFS038A05+           TACGAAACATACGCCGCATTAGACCTCATCTCCTCCTCCGAAACTCCATTCAAATCACCG
JMFS023G03+                          GCATTAGACCTCATCTCCTCCTCCGAAACTCCATTCAAATCACCG
JMFF037J17+                                                 CGAAACTCCATTCAAATCACCG
                      ____________________________________________________________
consensus             TACGAAACATACGCCGCATTAGACCTCATCTCCTCCTCCGAAACTCCATTCAAATCACCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS137G10+           CCGCCGAGAGCCTCCGGCGATCCTTTGATCGTCGGCGGA                     
JMFS038A05+           CCGCCGAGAGCCTCCGGCGATCCTTTGATCGTCGGCGGAGCTGAGCCACTCCGGAAAATG
JMFS023G03+           CCGCCGAGAGCCTCCGGCGATCCTTTGATCGTCGGCGGAGCTGAGCCACTCCGGAAAATG
JMFF037J17+           CCGCCGAGAGCCTCCGGCGATCCTTTGATCGTCGGCGGAGCTGAGCCACTCCGGAAAATG
                      ____________________________________________________________
consensus             CCGCCGAGAGCCTCCGGCGATCCTTTGATCGTCGGCGGAGCTGAGCCACTCCGGAAAATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS038A05+           CTCAGTTCCCCCTCCCGATTGCCCGCCTCCTCCAGCTGCCTCCTCTGCTCTCTTAGCAGC
JMFS023G03+           CTCAGTTCCCCCTCCCGATTGCCCGCCTCCTCCAGCTGCCTCCTCTGCTCTCTTAGCAGC
JMFF037J17+           CTCAGTTCCCCCTCCCGATTGCCCGCCTCCTCCAGCTGCCTCCTCTGCTCTCTTAGCAGC
                      ____________________________________________________________
consensus             CTCAGTTCCCCCTCCCGATTGCCCGCCTCCTCCAGCTGCCTCCTCTGCTCTCTTAGCAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS038A05+           ACCTCTAGCTCTTCCCCAAAATCGCTGCTCCCTCCCATCACCGATCGCATTCTCCGATTT
JMFS023G03+           ACCTCTAGCTCTTCCCCAAAATCGCTGCTCCCTCCCATCACCGATCGCATTCTCCGATTT
JMFF037J17+           ACCTCTAGCTCTTCCCCAAAATCGCTGCTCCCTCCCATCACCGATCGCATTCTCCGATTT
                      ____________________________________________________________
consensus             ACCTCTAGCTCTTCCCCAAAATCGCTGCTCCCTCCCATCACCGATCGCATTCTCCGATTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS038A05+           TCATCAGTAATCATTGCAAAAATATACACACACGCGAACTACAAAAAGCATCGACAAACA
JMFS023G03+           TCATCAGTAATCATTGCAAAAATATACACACACGCGAACTACAAAAAGCATCGACAAACA
JMFF037J17+           TCATCAGTAATCATTGCAAAAATATACACACACGCGAACTACAAAAAGCATCGACAAACA
                      ____________________________________________________________
consensus             TCATCAGTAATCATTGCAAAAATATACACACACGCGAACTACAAAAAGCATCGACAAACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS038A05+           TTAAGCTCAGAAAGCAACAATATTAACTTAATTCCCCGTAAGTTCTCTCAGACAACTAAA
JMFS023G03+           TTAAGCTCAGAAAGCAACAATATTAACTTAATTCCCCGTAAGTTCTCTCAGACAACTAAA
JMFF037J17+           TTAAGCTCAGAAAGCAACAATATTAACTTAATTCCCCGTAAGTTCTCTCAGACAACTAAA
                      ____________________________________________________________
consensus             TTAAGCTCAGAAAGCAACAATATTAACTTAATTCCCCGTAAGTTCTCTCAGACAACTAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS038A05+           AAAAAGGTGGAGAAACTGTTAAAGATTCCATTTTTTTCGCATAAGTTCAAACATT     
JMFS023G03+           AAAAAGGTGGAGAAACTGTTAAAGATTCCATTTTTTTCGCATAAGTTCAAACATTTAGCT
JMFF037J17+           AAAAAGGTGGAGAAACTGTTAAAGATTCCATTTTTTTCGCATAAGTTCAAACATTTAGCT
                      ____________________________________________________________
consensus             AAAAAGGTGGAGAAACTGTTAAAGATTCCATTTTTTTCGCATAAGTTCAAACATTTAGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS023G03+           AAAATTATAGCTCCGACAATGCCATTTTACAGTTGATCGTTATGAGATGGACCATTTTCA
JMFF037J17+           AAAATTATAGCTCCGACAATGCCATTTTACAGTTGATCGTTATGAGATGGACCATTTTCA
                      ____________________________________________________________
consensus             AAAATTATAGCTCCGACAATGCCATTTTACAGTTGATCGTTATGAGATGGACCATTTTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS023G03+           AGAGAGAGAAAGTGATGAAGTGCAGGGGGATTGATAAGCATGGAGCGTGGAGAGGGTTTT
JMFF037J17+           AGAGAGAGAAAGTGATGAAGTGCAGGGGGATTGATAAGCATGGAGCGTGGAGAGGGTTTT
                      ____________________________________________________________
consensus             AGAGAGAGAAAGTGATGAAGTGCAGGGGGATTGATAAGCATGGAGCGTGGAGAGGGTTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS023G03+           AGCCGTTGGATGAAGATGTTGACGGCTGAGATTG                          
JMFF037J17+           AGCCGTTGGATGAAGATGTTGACGGCTGAGATTGAGAGATGATGTAAGATTTGCTCTTAT
                      ____________________________________________________________
consensus             AGCCGTTGGATGAAGATGTTGACGGCTGAGATTGAGAGATGATGTAAGATTTGCTCTTAT