Contig 011582:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF017H19Sequence583011582 (3)ref|XP_011075571.1|1e-72PREDICTED: protein GDAP2 homolog isoform X2 [Sesamum indicum]748005463 (2)gb|AFK47574.1|6e-109unknown [Lotus japonicus]
JMFF033P02Sequence522011582 (3)gb|EYU28827.1|3e-40hypothetical protein MIMGU_mgv1a003733mg [Erythranthe guttata]766005463 (2)gb|AFK47574.1|9e-95unknown [Lotus japonicus]
JMSF019F16Sequence541011582 (3)ref|XP_011075571.1|7e-64PREDICTED: protein GDAP2 homolog isoform X2 [Sesamum indicum]796024537gb|AFK47574.1|2e-101unknown [Lotus japonicus]

Alignment

This contig is upended


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JMSF019F16+                                                              CTGCAGCCA
JMFF017H19+                       GGAAGATCATATGCTTTAGTAACTTTCGCCATTCCTGTTCTGCAGCCA
                      ____________________________________________________________
consensus                         GGAAGATCATATGCTTTAGTAACTTTCGCCATTCCTGTTCTGCAGCCA
 
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JMSF019F16+           CCCAGTGTTGCACATTCTTCTGCAAGACCAGGTCCAGCGGCAGCATGCAGACCAGGGCTG
JMFF017H19+           CCCAGTGTTGCACATTCTTCTGCAAGACCAGGTCCAGCGGCAGCATGCAGACCAGGGCTG
JMFF033P02+                             TCTGCAAGACCAGGTCCAGCGGCAGCATGCAGACCAGGGCTG
                      ____________________________________________________________
consensus             CCCAGTGTTGCACATTCTTCTGCAAGACCAGGTCCAGCGGCAGCATGCAGACCAGGGCTG
 
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JMSF019F16+           CTGTGAGCTTCGTCCAAGTTCTCATTGGTTGAGTTAACTACAGCATCCACCTCAAGATTC
JMFF017H19+           CTGTGAGCTTCGTCCAAGTTCTCATTGGTTGAGTTAACTACAGCATCCACCTCAAGATTC
JMFF033P02+           CTGTGAGCTTCGTCCAAGTTCTCATTGGTTGAGTTAACTACAGCATCCACCTCAAGATTC
                      ____________________________________________________________
consensus             CTGTGAGCTTCGTCCAAGTTCTCATTGGTTGAGTTAACTACAGCATCCACCTCAAGATTC
 
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JMSF019F16+           CAAGGGTCCCCTCTCCAC-AAATATATCTTCGAGTTCACCTCATGATCAACTGGAAACTT
JMFF017H19+           CAAGGGTCCCCTCTCCAC-AAATATATCTTCGAGTTCACCTCATGATCAACTGGAAACTT
JMFF033P02+           CAAGGGTCCCCTCTCCACAAAATATATCTTCGAGTTCACCTCATGATCAACTGGAAACTT
                      ____________________________________________________________
consensus             CAAGGGTCCCCTCTCCAC-AAATATATCTTCGAGTTCACCTCATGATCAACTGGAAACTT
 
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JMSF019F16+           GGAAAGGATACCATCCCCATTAATCTCAGACCCAGAAGCAGGTGCCAAAGGATCTGGGAA
JMFF017H19+           GGAAAGGATACCATCCCCATTAATCTCAGACCCAGAAGCAGGTGCCAAAGGATCTGGGAA
JMFF033P02+           GGAAAGGATACCATCCCCATTAATCTCAGACCCAGAAGCAGGTGCCAAAGGATCTGGGAA
                      ____________________________________________________________
consensus             GGAAAGGATACCATCCCCATTAATCTCAGACCCAGAAGCAGGTGCCAAAGGATCTGGGAA
 
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JMSF019F16+           ATATGTATTAGGAAAAGCAGGATCTTCATTCGCGTACAAGTACCTCTGCTCAGCATCAAT
JMFF017H19+           ATATGTATTAGGAAAAGCAGGATCTTCATTCGCGTACAAGAACCTCTGCTCAGCATCAAT
JMFF033P02+           ATATGTATTAGGAAAAGCAGGATCTTCATTCGCGTACAAGTACCTCTGCTCAGCATCAAT
                      ____________________________________________________________
consensus             ATATGTATTAGGAAAAGCAGGATCTTCATTCGCGTACAAGTACCTCTGCTCAGCATCAAT
 
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JMSF019F16+           CCAACGGGGAACTTGATCTAGTGTCACCACAGAATCTACACTATCAGTAGGTACTCCACC
JMFF017H19+           CCAACGGGGAACTTGATCTAGTGTCACCACAGAATCTACACTATCAGTAGGTACTCCACC
JMFF033P02+           CCAACGGGGAACTTGATCTAGTGTCACCACAGAATCTACACTATCAGTAGGTACTCCACC
                      ____________________________________________________________
consensus             CCAACGGGGAACTTGATCTAGTGTCACCACAGAATCTACACTATCAGTAGGTACTCCACC
 
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JMSF019F16+           CCGGTTGGTGGTGGCTGCCCCAGGCCGATACATATTTAGCTACTGCTACTCAAATCTCTG
JMFF017H19+           CCGGTTGGTGGTGGCTGCCCCAGGCCGATACATATTTAGCTACTGCTACTCAAATCTCTG
JMFF033P02+           CCGGTTGGTGGTGGCTGCCCCAGGCCGATACATATTTAGCTACTGCTACTCAAATCTCTG
                      ____________________________________________________________
consensus             CCGGTTGGTGGTGGCTGCCCCAGGCCGATACATATTTAGCTACTGCTACTCAAATCTCTG
 
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JMSF019F16+           CCTCTTTTTACTCTTTCCAAAATCGCTCTTTCCCT                         
JMFF017H19+           CCTCTTTTTACTCTTTCCAAAATCGCTCTTTCCCT                         
JMFF033P02+           CCTCTTTTTACTCTTTCCAAAATCGCTCTTTCCCTGTAATTAAGATTCGCAGGAGGAGAA
                      ____________________________________________________________
consensus             CCTCTTTTTACTCTTTCCAAAATCGCTCTTTCCCTGTAATTAAGATTCGCAGGAGGAGAA
 
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JMFF033P02+           GATTGAGCTGAGCTATGAATCTGTGATGGAGGAAGATAGGGCCTAGGGGCGTACCGAAAC
                      ____________________________________________________________
consensus             GATTGAGCTGAGCTATGAATCTGTGATGGAGGAAGATAGGGCCTAGGGGCGTACCGAAAC