Contig 011563:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF028L14Sequence534011563 (4)ref|XP_010549339.1|9e-61PREDICTED: AP-3 complex subunit mu [Tarenaya hassleriana]705011563 (4)ref|XP_006344791.1|7e-97PREDICTED: AP-3 complex subunit mu-like [Solanum tuberosum]
JMSF039D17Sequence671011563 (4)ref|XP_009587953.1|4e-126PREDICTED: AP-3 complex subunit mu [Nicotiana tomentosiformis]925011563 (4)ref|XP_011087509.1|2e-128PREDICTED: AP-3 complex subunit mu [Sesamum indicum]

Alignment

This contig is upended


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rJMFF028L14-              GTNTGATTTNAATTGTATCTCGTCCTTACAGAAAATTTACAGGAAGTGATTATAAA
rJMSF039D17-                               TCTCGTCCTTACAGAAAATTTACAGGAAGTGATTATAAA
                      ____________________________________________________________
consensus                 GTNTGATTTNAATTGTATCTCGTCCTTACAGAAAATTTACAGGAAGTGATTATAAA
 
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rJMFF028L14-          ACACCATTGAAAGATGTTTACTCCACCAGAAGCAAAGTATGAAAACACAAATGGTATTAC
rJMSF039D17-          ACACCATTGAAAGATGTTTACTCCACCAGAAGCAAAGTATGAAAACACAAATGGTATTAC
                      ____________________________________________________________
consensus             ACACCATTGAAAGATGTTTACTCCACCAGAAGCAAAGTATGAAAACACAAATGGTATTAC
 
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rJMFF028L14-          AGTAGTCAGGCTGAGAGAAATAGCGAGAAATTTGAAATGAATCTTCAAAGCTTCGTTCGA
rJMSF039D17-          AGTAGTCAGGCTGAGAGAAATAGCGAGAAATTTGAAATGAATCTTCAAAGCTTCGTTCGA
                      ____________________________________________________________
consensus             AGTAGTCAGGCTGAGAGAAATAGCGAGAAATTTGAAATGAATCTTCAAAGCTTCGTTCGA
 
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rJMFF028L14-          TTAAGATCTTACTTGATACTCTCCTGCTCGGGTTAGAGCCCGGAAACCTTTGTAAGGGCG
rJMSF039D17-          TTAAGATCTTACTTGATACTCTCCTGCTCGGGTTAGAGCCCGGAAACCTTTGTAAGGGCG
                      ____________________________________________________________
consensus             TTAAGATCTTACTTGATACTCTCCTGCTCGGGTTAGAGCCCGGAAACCTTTGTAAGGGCG
 
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rJMFF028L14-          TGTAGGGAGATTCCCGATATCCAGTTTGTCTATTTTAAGGCCAGAAAGAGCAGTACCCAT
rJMSF039D17-          TGTAGGGAGATTCCCGATATCCAGTTTGTCTATTTTAAGGCCAGAAAGAGCAGTACCCAT
                      ____________________________________________________________
consensus             TGTAGGGAGATTCCCGATATCCAGTTTGTCTATTTTAAGGCCAGAAAGAGCAGTACCCAT
 
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rJMFF028L14-          TATTTTGAATCCCAAGCGAAAAGTAGGGAATACATGAAGCCGCTTTAGACCAGACTCGAG
rJMSF039D17-          TATTTTGAATCCCAAGCGAAAAGTAGGGAATACATGAAGCCGCTTTAGACCAGACTCGAG
                      ____________________________________________________________
consensus             TATTTTGAATCCCAAGCGAAAAGTAGGGAATACATGAAGCCGCTTTAGACCAGACTCGAG
 
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rJMFF028L14-          CACTAAGGTCCCAGACAATGACGGGGATTTATCTTTTGGGATCCTTCCGATAGACCAACA
rJMSF039D17-          CACTAAGGTCCCAGACAATGACGGGGATTTATCTTTTGGGATCCTTCCGATAGACCAACA
                      ____________________________________________________________
consensus             CACTAAGGTCCCAGACAATGACGGGGATTTATCTTTTGGGATCCTTCCGATAGACCAACA
 
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rJMFF028L14-          GCAGGTCTTATCGGTGAGGATGTTAACTGTTCCAAGATTTGAAGAAAGATCTGCAGATAA
rJMSF039D17-          GCAGGTCTTATCGGTGAGGATGTTAACTGTTCCAAGATTTGAAGAAAGATCTGCAGATAA
                      ____________________________________________________________
consensus             GCAGGTCTTATCGGTGAGGATGTTAACTGTTCCAAGATTTGAAGAAAGATCTGCAGATAA
 
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rJMFF028L14-          AACACAATTAGGGAGCTGAAATTGCACACTCACTTCATCTATTGGCTTTCCTGGATCATT
rJMSF039D17-          AACACAATTAGGGAGCTGAAATTGCACACTCACTTCATCTATTGGCTTTCCTGGATCATT
                      ____________________________________________________________
consensus             AACACAATTAGGGAGCTGAAATTGCACACTCACTTCATCTATTGGCTTTCCTGGATCATT
 
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rJMFF028L14-          TTTAATTCCAACTAGCAAACTAATTCGGCATGTTCCAGAGTCTGAACTGAGCTGTGGCTT
rJMSF039D17-          TTTAATTCCAACTAGCAAACTAATTCGGCATGTTCCAGAGTCTGAACTGAGCTGTGGCTT
                      ____________________________________________________________
consensus             TTTAATTCCAACTAGCAAACTAATTCGGCATGTTCCAGAGTCTGAACTGAGCTGTGGCTT
 
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rJMFF028L14-          CACATATAAGGGAGTACTTTTCAACTTCTTGACTCTGTAGCTTGTTAGCTTGAAATGTCC
rJMSF039D17-          CACATATAAGGGAGTACTTTTCAACTTCTTGACTCTGTAGCTTGTTAGCTTGAAATGTCC
                      ____________________________________________________________
consensus             CACATATAAGGGAGTACTTTTCAACTTCTTGACTCTGTAGCTTGTTAGCTTGAAATGTCC
 
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rJMFF028L14-          ATCAGGAGGAACAAACGACAAAATTTGGTTTGATTCCCATGGTCGTAGA           
rJMSF039D17-          ATCAGGAGGAACAAACGACAAAATTTGGTTTGATTCCCATGGTCGTAGACGAACACAAGG
                      ____________________________________________________________
consensus             ATCAGGAGGAACAAACGACAAAATTTGGTTTGATTCCCATGGTCGTAGACGAACACAAGG
 
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rJMSF039D17-          ATGGAATTGCACATCGTTCAAGATGGATGGATTTGCAAATGAAAGAGTAAGATCAGGAAT
                      ____________________________________________________________
consensus             ATGGAATTGCACATCGTTCAAGATGGATGGATTTGCAAATGAAAGAGTAAGATCAGGAAT
 
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rJMSF039D17-          ACCAGAAAGTTGAGAGTTAACTTCAATTTCACCATAAACCTCACATTTTACAAGAGTTCC
JMSF039D17+                                TTCAATTTCACCATAAACCTCACATTTTACAAGAGTT-C
                      ____________________________________________________________
consensus             ACCAGAAAGTTGAGAGTTAACTTCAATTTCACCATAAACCTCACATTTTACAAGAGTTCC
 
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rJMSF039D17-          CTTCCTTGTTAATAATAGCATCCATCTCTTCAACGAGGTTAACATAAACTTCATTGCTTG
JMSF039D17+           CTTCCTTGTTAATAATAGCATCCATCTCTTCAACGAGGTTAACATAAACTTCATTGCTTG
                      ____________________________________________________________
consensus             CTTCCTTGTTAATAATAGCATCCATCTCTTCAACGAGGTTAACATAAACTTCATTGCTTG
 
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rJMSF039D17-          TATGTTTCAGGTCTGTTTTCCTCCAAGGAACGCAGGTTGCTGTTGC              
JMSF039D17+           TATGTTTCAAGTCTGTTTTCCTCCAAGGAACGCAGGTTGCTGTTGCACCAGGAAGAGTGT
                      ____________________________________________________________
consensus             TATGTTTCAGGTCTGTTTTCCTCCAAGGAACGCAGGTTGCTGTTGCACCAGGAAGAGTGT
 
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JMSF039D17+           TGCTGACATTGGAACTGCTTCCAGTTACAACACTCAACATTTTGCTAACAATATTTGGAG
                      ____________________________________________________________
consensus             TGCTGACATTGGAACTGCTTCCAGTTACAACACTCAACATTTTGCTAACAATATTTGGAG
 
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JMSF039D17+           GAGCTATCATCTCCCTCAGTATATTAGGTTCTGTTGTAAGAGGAAAACCATTGTCTATCA
                      ____________________________________________________________
consensus             GAGCTATCATCTCCCTCAGTATATTAGGTTCTGTTGTAAGAGGAAAACCATTGTCTATCA
 
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JMSF039D17+           TCTCATCCAAAAGCTCATATGCAATAACAAAGTTATCTTTCACCAAATCTTCATTTAACC
JMFF028L14+                        CTCATATGCAATAACAAAGTTATCTTTCACCAAACCTTCATTTAACC
                      ____________________________________________________________
consensus             TCTCATCCAAAAGCTCATATGCAATAACAAAGTTATCTTTCACCAAATCTTCATTTAACC
 
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JMSF039D17+           CACCAAGGTAATCAGAAAAGATATCAGCTACTCTGCAAAGGAACTCAATTGCCATTAGAG
JMFF028L14+           CACCAAGGTAATCAGAAAAGATATCAGCTACTCTGCAAAGGAACTCAATTGCCATTAGAG
                      ____________________________________________________________
consensus             CACCAAGGTAATCAGAAAAGATATCAGCTACTCTGCAAAGGAACTCAATTGCCATTAGAG
 
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JMSF039D17+           GAGGCATTTCAACTTGTGTGCAAGCTAGGAATGTGATCCCCTCACGTACAACTTGGAAAA
JMFF028L14+           GAGGCATTTCAACTTGTGTGCAAGCTAGGAATGTGATCCCCTCACGTACAACTTGGAAAA
                      ____________________________________________________________
consensus             GAGGCATTTCAACTTGTGTGCAAGCTAGGAATGTGATCCCCTCACGTACAACTTGGAAAA
 
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JMSF039D17+           GGTAATGTGTGGGTGAAGCAATCACAGGCAAATGCTTGAAAGAATCACCTTGAGAGATTG
JMFF028L14+           GGTAATGTGTGGGTGAAGCAATCACAGGCAAATG--------------CTTGAGAGATTG
                      ____________________________________________________________
consensus             GGTAATGTGTGGGTGAAGCAATCACAGGCAAATGCTTGAAAGAATCACCTTGAGAGATTG
 
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JMSF039D17+           ATTGTTCCCAGAACCAATCACATATTGACCTGTCGACACGGTGCCCAGTGAGCTGTTTCT
JMFF028L14+           ATTGTTCCCAGAACCAATCACATATTGACCTGTCGACACGGTGCCCAGTGAGCTGTTTCT
                      ____________________________________________________________
consensus             ATTGTTCCCAGAACCAATCACATATTGACCTGTCGACACGGTGCCCAGTGAGCTGTTTCT
 
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JMSF039D17+           CTAGCATTACCTCCCCAGAATCAGAAAGAAGGAAAATGCACTGCAACATGTTTTCTTCTT
JMFF028L14+           CTAGCATTACCTCCCCAGAATCAGAAAGAAGGAAAATGCACTGCAACATGTTTTCTTCTT
                      ____________________________________________________________
consensus             CTAGCATTACCTCCCCAGAATCAGAAAGAAGGAAAATGCACTGCAACATGTTTTCTTCTT
 
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JMSF039D17+           CTTCTTCTTCTTCTCGATCTCTTTTTTCCTAC                            
JMFF028L14+           CTTCTTCTTCTTCTCGATCTCTTTTTTCCTACTTTACTCGAGGAGTATACGATCAGATCC
                      ____________________________________________________________
consensus             CTTCTTCTTCTTCTCGATCTCTTTTTTCCTACTTTACTCGAGGAGTATACGATCAGATCC