Contig 011555:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF026L19Sequence614011555 (2)ref|XP_009607597.1|8e-61PREDICTED: ubiquitin receptor RAD23d-like isoform X1 [Nicotiana tomentosiformis681011555 (2)ref|XP_011099561.1|3e-90PREDICTED: ubiquitin receptor RAD23c-like [Sesamum indicum]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF026L19-                                 CTGCTATTCATGAATTATAAGCTACGTAGTAAAATTT
                      ____________________________________________________________
consensus                                    CTGCTATTCATGAATTATAAGCTACGTAGTAAAATTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF026L19-          AATCTACCTGGCAAAGTGAGAAAAAGTTGAATAGGTTTCAAAACTGAGAAGTTGAAGGTA
                      ____________________________________________________________
consensus             AATCTACCTGGCAAAGTGAGAAAAAGTTGAATAGGTTTCAAAACTGAGAAGTTGAAGGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF026L19-          TAAGAGAAAAGAGTGCTTCTGTACGTGATTGCTAATCATCAAACTCATGCATGTGATCTA
                      ____________________________________________________________
consensus             TAAGAGAAAAGAGTGCTTCTGTACGTGATTGCTAATCATCAAACTCATGCATGTGATCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF026L19-          AAAGATAGTTAGCTGCCTGCTCCTCATTTTTGTTGCATGCAAAAAACACTTGCAATACCA
                      ____________________________________________________________
consensus             AAAGATAGTTAGCTGCCTGCTCCTCATTTTTGTTGCATGCAAAAAACACTTGCAATACCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF026L19-          AAGCTTGATCAAAACCCATAGCTTCAAGGCGCTCAATTGACTCACGCTCTTCAGGAGTGA
                      ____________________________________________________________
consensus             AAGCTTGATCAAAACCCATAGCTTCAAGGCGCTCAATTGACTCACGCTCTTCAGGAGTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF026L19-          CAGTGACAGCTTGTGGCAGTCCTCCAGCCATCTGACCAAATATGTTCCCCCCCTCTCCTT
                      ____________________________________________________________
consensus             CAGTGACAGCTTGTGGCAGTCCTCCAGCCATCTGACCAAATATGTTCCCCCCCTCTCCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF026L19-          CAACAGGTTCATTGACGAGGCGTAGGAAATCAGCCCGATGTTCTTGAATAAGCTGCAGAA
                      ____________________________________________________________
consensus             CAACAGGTTCATTGACGAGGCGTAGGAAATCAGCCCGATGTTCTTGAATAAGCTGCAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF026L19-          GCTGAGGGTTTTGCTTTCCCAGCTCCTGAAGCATAGCCGGCAAGATTTGAGGATTGGCTT
                      ____________________________________________________________
consensus             GCTGAGGGTTTTGCTTTCCCAGCTCCTGAAGCATAGCCGGCAAGATTTGAGGATTGGCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF026L19-          GCACCATGGCTCTGAGGGTCTGGAACTGTTGACTATTGCGTAGGAAATCCAAATTGCCAG
                      ____________________________________________________________
consensus             GCACCATGGCTCTGAGGGTCTGGAACTGTTGACTATTGCGTAGGAAATCCAAATTGCCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF026L19-          CACTTGCATTGGAACCCACATTTGGAAGGCCCTGTGGGAATAAATTCAAAGGATTGGCAT
JMFF026L19+                                                         CAAAGGATTGGCAT
                      ____________________________________________________________
consensus             CACTTGCATTGGAACCCACATTTGGAAGGCCCTGTGGGAATAAATTCAAAGGATTGGCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF026L19-          TTGGGCCACTGGAAGGTACTGTTTGTTGAGAAGGCACAGTTGAGGAGTTCACAGTTTGCC
JMFF026L19+           TTGGGCCACTGGAAGGTACTGTTTGTTGAGAAGGCACAGTTGAGGAGTTCACAGTTTGCC
                      ____________________________________________________________
consensus             TTGGGCCACTGGAAGGTACTGTTTGTTGAGAAGGCACAGTTGAGGAGTTCACAGTTTGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF026L19-          CACCGGGAGTTGTGGTAGCTTGTGTAACAGCTTCGGCTTGCTCA                
JMFF026L19+           CACCGGGAGTTGTGGTAGCTTGTGTAACAGCTTCGGCTTGCTCAGGAATACCCGAATACA
                      ____________________________________________________________
consensus             CACCGGGAGTTGTGGTAGCTTGTGTAACAGCTTCGGCTTGCTCAGGAATACCCGAATACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF026L19+           AGTAATCAACAGCTCTCTCGGGATTGTTATAGGCAGCACGCAAAGCACGGACGACTCTAT
                      ____________________________________________________________
consensus             AGTAATCAACAGCTCTCTCGGGATTGTTATAGGCAGCACGCAAAGCACGGACGACTCTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF026L19+           CCCGGTCCCAACTGCCCCCACCCATATCAAGAATTTGTTGAATTGTGGCCTCTAAGTTAC
                      ____________________________________________________________
consensus             CCCGGTCCCAACTGCCCCCACCCATATCAAGAATTTGTTGAATTGTGGCCTCTAAGTTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF026L19+           TTCCAGCTACAAGATTTGATGCTGCTTGACCATAGATATCTGTCACAGAAGCAGTAGACA
                      ____________________________________________________________
consensus             TTCCAGCTACAAGATTTGATGCTGCTTGACCATAGATATCTGTCACAGAAGCAGTAGACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF026L19+           CTGGAGTTGCAGCAGGAGTAGGGGCAGATTCAGGAGCAGACTGTGGAGGTGCCACAATAG
                      ____________________________________________________________
consensus             CTGGAGTTGCAGCAGGAGTAGGGGCAGATTCAGGAGCAGACTGTGGAGGTGCCACAATAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF026L19+           AGGCAATAGCTGGAGGCGCTGTCACCGTCTGGGTTGATTGCCCTGTGGAGGTTGCAGGTG
                      ____________________________________________________________
consensus             AGGCAATAGCTGGAGGCGCTGTCACCGTCTGGGTTGATTGCCCTGTGGAGGTTGCAGGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF026L19+           TGGCCGCAACAGAAGGTTTTGATGAGGCTTCACCTGATGAGGCCTTATTCTTAGTCAGCA
                      ____________________________________________________________
consensus             TGGCCGCAACAGAAGGTTTTGATGAGGCTTCACCTGATGAGGCCTTATTCTTAGTCAGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF026L19+           TAACAACAACATAATTATTTTCAGCAACTTTATTTTCTTCCAATGTTGTTGTGTCCTTGA
                      ____________________________________________________________
consensus             TAACAACAACATAATTATTTTCAGCAACTTTATTTTCTTCCAATGTTGTTGTGTCCTTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF026L19+           GAACTTTACCCTGATGGATAAGCATCAGCTGTGCAGCAGGGTAGACATCTGAGCCCTGAA
                      ____________________________________________________________
consensus             GAACTTTACCCTGATGGATAAGCATCAGCTGTGCAGCAGGGTAGACATCTGAGCCCTGAA