| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF024N15 | Sequence | 518 | 011550 (8) | ref|XP_008378047.1| | 2e-29 | PREDICTED: probable calcium-binding protein CML17 [Malus domestica] | 731 | 011550 (8) | ref|XP_008378047.1| | 2e-28 | PREDICTED: probable calcium-binding protein CML17 [Malus domestica] |
| JMFF025B22 | Sequence | 631 | 011550 (8) | ref|XP_008378047.1| | 4e-29 | PREDICTED: probable calcium-binding protein CML17 [Malus domestica] | 606 | 011550 (8) | ref|XP_008378047.1| | 3e-29 | PREDICTED: probable calcium-binding protein CML17 [Malus domestica] |
| JMFN014K22 | Sequence | 612 | 011550 (8) | ref|XP_008378047.1| | 3e-29 | PREDICTED: probable calcium-binding protein CML17 [Malus domestica] | |||||
| JMFN014N22 | Sequence | 611 | 011550 (8) | ref|XP_008378047.1| | 3e-29 | PREDICTED: probable calcium-binding protein CML17 [Malus domestica] | |||||
| JMFN014O24 | Sequence | 613 | 011550 (8) | ref|XP_008378047.1| | 7e-22 | PREDICTED: probable calcium-binding protein CML17 [Malus domestica] | |||||
| JMFN018K03 | Sequence | 614 | 011550 (8) | ref|XP_008378047.1| | 3e-29 | PREDICTED: probable calcium-binding protein CML17 [Malus domestica] | |||||
This contig is upended
. : . : . : . : . : . :
rJMFF024N15- T
____________________________________________________________
consensus T
. : . : . : . : . : . :
rJMFF024N15- ATATTAAAGAAGAAAACCCTCAGCTTCTTCAATTCATAACAATAAAGATCAATCAAACAC
____________________________________________________________
consensus ATATTAAAGAAGAAAACCCTCAGCTTCTTCAATTCATAACAATAAAGATCAATCAAACAC
. : . : . : . : . : . :
JMFN014N22+ AATGAAGACTTAAAT
JMFN018K03+ AAAATGAAGACTTAAAT
JMFN014O24+ AGGAAAGANAATGAAGACTTAAAT
rJMFF024N15- ATCCCGCCATTCACTTCTTTCACCCGTCTCCCGGATAGGAAAGAAAATGAAGACTTAGAT
____________________________________________________________
consensus ATCCCGCCATTCACTTCTTTCACCCGTCTCCCGGATAGGAAAGAAAATGAAGACTTAAAT
. : . : . : . : . : . :
JMFN014N22+ TTGAGGTTCAAACTTATAAAGATCAATCGAGATTAAAAAATAATAATAATAATAATAGCA
JMFN018K03+ TTGAGGTTCAAACTTATAAAGATCAATCGAGATTAAAAAATAATAATAATAATAATAGCA
JMFN014O24+ TTGAGGTTCAAACTTATAAAGATCAATCGAGATTAAAAAATAATAATAATAATAATAGCA
rJMFF024N15- TTGAGGTTCAAACTTATAAAGATCAATCGAGATTAAAAAATAATAATAATAATAATAGCA
JMFN014K22+ ATCGAGATTAAAAAATAATAATAATAATAATAGCA
rJMFF025B22- ATAGCA
JMFF025B22+ ATAATAATAATAATAATAGCA
____________________________________________________________
consensus TTGAGGTTCAAACTTATAAAGATCAATCGAGATTAAAAAATAATAATAATAATAATAGCA
. : . : . : . : . : . :
JMFN014N22+ TATGTATCAAACCAAAAGATCATACACAAAATAAGACACGTATAGTACGAACATTACATC
JMFN018K03+ TATGTATCAAACCAAAAGATCATACACAAAATAAGACACGTATAGTACGAACATTACATC
JMFN014O24+ TATGTATCAAACCAAAAGATCATACACAAAATAAGACACGTATAGTACGAACATTACATC
rJMFF024N15- TATGTATCAAACCAAAAGATCATACACAAAATAAGACACGTATAGTACGAACATTACATC
JMFN014K22+ TATGTATCAAACCAAAAGATCATACACAAAATAAGACACGTATAGTACGAACATTACATC
JMFF024N15+ TAAGACACGTATAGTACGAACATTACATC
rJMFF025B22- TATGTATCAAACCAAAAGATCATACACAAAATAAGACACGTATAGTACGAACATTACATC
JMFF025B22+ TATGTATCAAACCAAAAGATCATACACAAAATAAGACACGTATAGTACGAACATTACATC
____________________________________________________________
consensus TATGTATCAAACCAAAAGATCATACACAAAATAAGACACGTATAGTACGAACATTACATC
. : . : . : . : . : . :
JMFN014N22+ GGCAGATCGAAGCAATGCAAGTACGAGGTTGATCCAAATTCCGGCGGCGGTGTTTGCGAA
JMFN018K03+ GGCAGATCGAAGCAATGCAAGTACGAGGTTGATCCAAATTCCGGCGGCGGTGTTTGCGAA
JMFN014O24+ GGCAGATCGAAGCAATGCAAGTACGAGGTTGATCCAAATTCCGGCGGCGGTGTTTGCGAA
rJMFF024N15- GGCAGATCGAAGCAATGCAAGTACGAGGTTGATCCAAATTCCGGCGGCGGTGTTTGCGAA
JMFN014K22+ GGCAGATCGAAGCAATGCAAGTACGAGGTTGATCCAAATTCCGGCGGCGGTGTTTGCGAA
JMFF024N15+ GGCAGATCGAAGCAATGCAAGTACGAGGTTGATCCAAATTCCGGCGGCGGTGTTTGCGAA
rJMFF025B22- GGCAGATCGAAGCAATGCAAGTACGAGGTTGATCCAAATTCCGGCGGCGGTGTTTGCGAA
JMFF025B22+ GGCAGATCGAAGCAATGCAAGTACGAGGTTGATCCAAATTCCGGCGGCGGTGTTTGCGAA
____________________________________________________________
consensus GGCAGATCGAAGCAATGCAAGTACGAGGTTGATCCAAATTCCGGCGGCGGTGTTTGCGAA
. : . : . : . : . : . :
JMFN014N22+ AGCGTTGAATTATTTATTCAATTTGCATATATAAATAAAGCGCGCAAATATATATAATGA
JMFN018K03+ AGCGTTGAATTATTTATTCAATTTGCATATATAAATAAAGCGCGCAAATATATATAATGA
JMFN014O24+ AGCGTTGAATTATTTATTCAATTTGCATATATAAATAAAGCGCGCAAATATATATAATGA
rJMFF024N15- AGCGTTGAATTATTTATTCAATTTGCATATATAAATAAAGCGCGCAAATATATATAATGA
JMFN014K22+ AGCGTTGAATTATTTATTCAATTTGCATATATAAATAAAGCGCGCAAATATATATAATGA
JMFF024N15+ AGCGTTGAATTATTTATTCAATTTGCATATATAAATAAAGCGCGCAAATATATATAATGA
rJMFF025B22- AGCGTTGAATTATTTATTCAATTTGCATATATAAATAAAGCGCGCAAATATATATAATGA
JMFF025B22+ AGCGTTGAATTATTTATTCAATTTGCATATATAAATAAAGCGCGCAAATATATATAATGA
____________________________________________________________
consensus AGCGTTGAATTATTTATTCAATTTGCATATATAAATAAAGCGCGCAAATATATATAATGA
. : . : . : . : . : . :
JMFN014N22+ AAGCGGCCGGCCGGCGGGCCGGCGTTAATAGTAGGTGACGATCCGGATGTTCAAGTTCTT
JMFN018K03+ AAGCGGCCGGCCGGCGGGCCGGCGTTAATAGTAGGTGACGATCCGGATGTTCAAGTTCTT
JMFN014O24+ AAGCGGCCGGCCGGCGGGCCGGCGTTAATAGTAGGTGACGATCCGGATGTTCAAGTTCTT
rJMFF024N15- AAGCGGCCGGCCGGCGGGCCGGCGTTAATAGTAGGTGACGATCCGGATGTTCAAGTTCTT
JMFN014K22+ AAGCGGCCGGCCGGCGGGCCGGCGTTAATAGTAGGTGACGATCCGGATGTTCAAGTTCTT
JMFF024N15+ AAGCGGCCGGCCGGCGGGCCGGCGTTAATAGTAGGTGACGATCCGGATGTTCAAGTTCTT
rJMFF025B22- AAGCGGCCGGCCGGCGGGCCGGCGTTAATAGTAGGTGACGATCCGGATGTTCAAGTTCTT
JMFF025B22+ AAGCGGCCGGCCGGCGGGCCGGCGTTAATAGTAGGTGACGATCCGGATGTTCAAGTTCTT
____________________________________________________________
consensus AAGCGGCCGGCCGGCGGGCCGGCGTTAATAGTAGGTGACGATCCGGATGTTCAAGTTCTT
. : . : . : . : . : . :
JMFN014N22+ CTGAGCAAAGTCGACCAGCTTATCCATCTCGTTATCGTCGATGAAGCCGTTGCCGTTGCC
JMFN018K03+ CTGAGCAAAGTCGACCAGCTTATCCATCTCGTTATCGTCGATGAAGCCGTTGCCGTTGCC
JMFN014O24+ CTGAGCAAAGTCGA-CAGCTTATCCATCTCGTTATCGTCGATGAAGCCGTTGCCGTTGCC
rJMFF024N15- CTGAGCAAAGTCGACCAGCTTATCCATCTCGTTATCGTCGATGTAGCCGTTGCCGTTGCC
JMFN014K22+ CTGAGCAAAGTCGACCAGCTTATCCATCTCGTTATCGTCGATGAAGCCGTTGCCGTTGCC
JMFF024N15+ CTGAGCAAAGTCGACCAGCTTATCCATCTCGTTATCGTCGATGTAGCCGTTGCCGTTGCC
rJMFF025B22- CTGAGCAAAGTCGACCAGCTTATCCATCTCGTTATCGTCGATGAAGCCGTTGCCGTTGCC
JMFF025B22+ CTGAGCAAAGTCGACCAGCTTATCCATCTCGTTATCGTCGATGAAGCCGTTGCCGTTGCC
____________________________________________________________
consensus CTGAGCAAAGTCGACCAGCTTATCCATCTCGTTATCGTCGATGAAGCCGTTGCCGTTGCC
. : . : . : . : . : . :
JMFN014N22+ GTCGGCGGCCTTCATTCCCTGGCGGCCTTTGAACCAGCACAGCCTCCCTCCGGTGGCGTG
JMFN018K03+ GTCGGCGGCCTTCATTCCCTGGCGGCCTTTGAACCAGCACAGCCTCCCTCCGGTGGCGTG
JMFN014O24+ GTCGGCGGCCTTCATTCCCTGGCGGCCTTTGAACCAGCACAGCCTCCCTCCGGTGGCGTG
rJMFF024N15- GTCGGCGGCCTTCATTCCCTGGCGGCCTTTGAACCAGCACAGCCTCCCTCCGGTGGCGTG
JMFN014K22+ GTCGGCGGCCTTCATTCCCTGGCGGCCTTTGAACCAGCACAGCCTCCCTCCGGTGGCGTG
JMFF024N15+ GTCGGCGGCCTTCATTCCCTGGCGGCCTTTGAACCAGCACAGCCTCCCTCCGGTGGCGTG
rJMFF025B22- GTCGGCGGCCTTCATTCCCTGGCGGCCTTTGAACCAGCACAGCCTCCCTCCGGTGGCGTG
JMFF025B22+ GTCGGCGGCCTTCATTCCCTGGCGGCCTTTGAACCAGCACAGCCTCCCTCCGGTGGCGTG
____________________________________________________________
consensus GTCGGCGGCCTTCATTCCCTGGCGGCCTTTGAACCAGCACAGCCTCCCTCCGGTGGCGTG
. : . : . : . : . : . :
JMFN014N22+ GATGGCTTCCTGGAGCTCTTCCCTGTTTATTCTGCCGTCCCTATCTGCATCATAAGTCCT
JMFN018K03+ GATGGCTTCCTGGAGCTCTTCCCTGTTTATTCTGCCGTCCCTATCTGCATCATAAGTCCT
JMFN014O24+ GATGGCTTCCTGGAGCTCTTCCCTGTTTATTCTGCCGTCCCTATCTGCATCATAAGTCCT
rJMFF024N15- GATGGCTTCCTGGAGCTCTTCCCTGTTTATTCTGCCGTCCCTATCTGCATCATAAGTCCT
JMFN014K22+ GATGGCTTCCTGGAGCTCTTCCCTGTTTATTCTGCCGTCCCTATCTGCATCATAAGTCCT
JMFF024N15+ GATGGCTTCCTGGAGCTCTTCCCTGTTTATTCTGCCGTCCCTATCTGCATCATAAGTCCT
rJMFF025B22- GATGGCTTCCTGGAGCTCTTCCCTGTTTATTCTGCCGTCCCTATCTGCATCATAAGTCCT
JMFF025B22+ GATGGCTTCCTGGAGCTCTTCCCTGTTTATTCTGCCGTCCCTATCTGCATCATAAGTCCT
____________________________________________________________
consensus GATGGCTTCCTGGAGCTCTTCCCTGTTTATTCTGCCGTCCCTATCTGCATCATAAGTCCT
. : . : . : . : . : . :
JMFN014N22+ CACAAATTTCTTGAACTCTTCCAACGTCATGTCTAGTTTCCCATCGCTAGGAGCACTGCG
JMFN018K03+ CACAAATTTCTTGAACTCTTCCAACGTCATGTCTAGTTTCCCATCGCTAGGAGCACTGCG
JMFN014O24+ CACAAATTTCTTGAACTCTTCCAACGTCATGTCTAGTTTCCCATCGCTAGGAGCACTGCG
rJMFF024N15- CACAAATTTCTTGAACTCTTCCAACGTCATGTCTAGTTTCCCATCGCTAGGAGCACTGCG
JMFN014K22+ CACAAATTTCTTGAACTCTTCCAACGTCATGTCTAGTTTCCCATCGCTAGGAGCACTGCG
JMFF024N15+ CACAAATTTCTTGAACTCTTCCAACGTCATGTCTAGTTTCCCATCGCTAGGAGCACTGCG
rJMFF025B22- CACAAATTTCTTGAACTCTTCCAACGTCATGTCTAGTTTCCCATCGCTAGGAGCACTGCG
JMFF025B22+ CACAAATTTCTTGAACTCTTCCAACGTCATGTCTAGTTTCCCATCGCTAGGAGCACTGCG
____________________________________________________________
consensus CACAAATTTCTTGAACTCTTCCAACGTCATGTCTAGTTTCCCATCGCTAGGAGCACTGCG
. : . : . : . : . : . :
JMFN014N22+ TGGATAGCTCTTAATAGCCATTTAATTTCACTACTAATTTTAACTTCTAATTAA
JMFN018K03+ TGGATAGCTCTTAATAGCCATTTAATTTCACTACTAATTTTAACTTCTAA
JMFN014O24+ TGGATAGCTCTTAATAGCCATTTAATTTCACTACTAATTTTAA
rJMFF024N15- TGGATAGCTCTTAATAGCCATTTAATTTCACTACTAATTTTAACTTCTAATTAATCTAAA
JMFN014K22+ TGGATAGCTCTTAATAGCCATTTAATTTCACTACTAATTTTAACTTCTAATTAATCTAAA
JMFF024N15+ TGGATAGCTCTTAATAGCCATTTAATTTCACTACTAATTTTAACTTCTAATTAATCTAAA
rJMFF025B22- TGGATAGCTCTTAATAGCCATTTAATTTCACTACTAATTTTAACTTCTAATTAATCTAAA
JMFF025B22+ TGGATAGCTCTTAATAGCCATTTAATTTCACTACTAATTTTAACTTCTAATTAATCTAAA
____________________________________________________________
consensus TGGATAGCTCTTAATAGCCATTTAATTTCACTACTAATTTTAACTTCTAATTAATCTAAA
. : . : . : . : . : . :
rJMFF024N15- TA
JMFN014K22+ TATATGTGTGTGTATAGAAGAGTATTTCTGCTCCTTC
JMFF024N15+ TATATGTGT
rJMFF025B22- TATATGTGTGTGTATAGAAGAGTATTTCTGCTCCTTCTTATAGAGATGCAGGTTGGTGAT
JMFF025B22+ TATATGTGTGTGTATAGAAGAGTATTTCTGCTCCTTCTTATAGAGATGCAGGTTGGTGAT
____________________________________________________________
consensus TATATGTGTGTGTATAGAAGAGTATTTCTGCTCCTTCTTATAGAGATGCAGGTTGGTGAT