clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF003I01 | Sequence | 491 | 011529 (12) | ref|XP_009799351.1| | 2e-19 | PREDICTED: late embryogenesis abundant protein Lea5-like [Nicotiana sylvestris] | 467 | 011529 (12) | ref|XP_009799351.1| | 1e-19 | PREDICTED: late embryogenesis abundant protein Lea5-like [Nicotiana sylvestris] |
JMFF011F23 | Sequence | 416 | 011529 (12) | ref|XP_009799351.1| | 9e-20 | PREDICTED: late embryogenesis abundant protein Lea5-like [Nicotiana sylvestris] | |||||
JMFF019H21 | Sequence | 496 | 011529 (12) | ref|XP_009799351.1| | 2e-19 | PREDICTED: late embryogenesis abundant protein Lea5-like [Nicotiana sylvestris] | 471 | 011529 (12) | ref|XP_009799351.1| | 2e-19 | PREDICTED: late embryogenesis abundant protein Lea5-like [Nicotiana sylvestris] |
JMFN003E13 | Sequence | 486 | 011529 (12) | ref|XP_009799351.1| | 2e-19 | PREDICTED: late embryogenesis abundant protein Lea5-like [Nicotiana sylvestris] | |||||
JMFN013P24 | Sequence | 535 | 011529 (12) | ref|XP_009799351.1| | 3e-19 | PREDICTED: late embryogenesis abundant protein Lea5-like [Nicotiana sylvestris] | |||||
JMFN042O03 | Sequence | 484 | 011529 (12) | ref|XP_009799351.1| | 2e-19 | PREDICTED: late embryogenesis abundant protein Lea5-like [Nicotiana sylvestris] | |||||
JMFN044B17 | Sequence | 510 | 011529 (12) | ref|XP_009799351.1| | 7e-18 | PREDICTED: late embryogenesis abundant protein Lea5-like [Nicotiana sylvestris] | |||||
JMFN044E08 | Sequence | 289 | 011529 (12) | gb|AEW24432.1| | 5e-07 | late embryogenesis abundant protein 3L-1 [Camellia sinensis] | |||||
JMFS023E11 | Sequence | 485 | 011529 (12) | ref|XP_009799351.1| | 2e-19 | PREDICTED: late embryogenesis abundant protein Lea5-like [Nicotiana sylvestris] | |||||
JMFS134D04 | Sequence | 497 | 011529 (12) | ref|XP_009799351.1| | 2e-19 | PREDICTED: late embryogenesis abundant protein Lea5-like [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
JMFN044E08+ ACATAAAAGAATAGAATTTTGAACAAAAATATG
JMFN013P24+ GAACAAAAATATG
____________________________________________________________
consensus ACATAAAAGAATAGAATTTTGAACAAAAATATG
. : . : . : . : . : . :
JMFN044E08+ AATCATCACATAAAAGAGATTAACTCATCAGCTCATATTATAATTTTATAAATTCTATAG
JMFN044B17+ AAAGAGATTAACTCATCAGCTCATATTATAATTTTATAAATTCTATAG
JMFS134D04+ AAAGAGATTAACTCATCAGCTCATATTATAATTTTATAAATTCTATAG
JMFN003E13+ ATTATAATTTTATAAATTCTATAG
JMFS023E11+ ATTATAATTTTATAAATTCTATAG
JMFN013P24+ AATCATCACATAAAAGAGATTAACTCATCAGCTCATATTATAATTTTATAAATTCTATAG
JMFN042O03+ ATAATTTTATAAATTCTATAG
JMFF003I01+ TATAG
JMFF019H21+ TTCTATAG
____________________________________________________________
consensus AATCATCACATAAAAGAGATTAACTCATCAGCTCATATTATAATTTTATAAATTCTATAG
. : . : . : . : . : . :
JMFN044E08+ AACTGGAATATTTTCCCTTTTCTTTAATATAACTTCAAGAATCCATCATGGGCGGATCCA
JMFN044B17+ AACTGGAATATTTTCCCTTTTCTTTAATATAACTTCAAGAATCCATCATGGGCGGATCCA
JMFS134D04+ AACTGGAATATTTTCCCTTTTCTTTAATATAACTTCAAGAATCCATCATGGGCGGATCCA
JMFN003E13+ AACTGGAATATTTTCCCTTTTCTTTAATATAACTTCAAGAATCCATCATGGGCGGATCCA
JMFS023E11+ AACTGGAATATTTTCCCTTTTCTTTAATATAACTTCAAGAATCCATCATGGGCGGATCCA
JMFN013P24+ AACTGGAATATTTTCCCTTTTCTTTAATATAACTTCAAGAATCCATCATGGGCGGATCCA
JMFN042O03+ AACTGGAATATTTTCCCTTTTCTTTAATATAACTTCAAGAATCCATCATGGGCGGATCCA
JMFF003I01+ AACTGGAATATTTTCCCTTTTCTTTAATATAACTTCAAGAATCCATCATGGGCGGATCCA
rJMFF019H21- TTTTCCCTTTTCTTTAATATAACTTCAAGAATCCATCATGGGCGGATCCA
rJMFF003I01- TTTATATAACTTCAAGAATCCATCATGGGCGGATCCA
JMFF019H21+ AACTGGAATATTTTCCCTTTTCTTTAATATAACTTCAAGAATCCATCATGGGCGGATCCA
____________________________________________________________
consensus AACTGGAATATTTTCCCTTTTCTTTAATATAACTTCAAGAATCCATCATGGGCGGATCCA
. : . : . : . : . : . :
JMFN044E08+ AACACGAGTAATCTCAAGCAATCAAAAATACTTTTCAGTTTCGTCTAATTTTGTTGTTGA
JMFN044B17+ AACACGAGTAATCTCAAGCAATCAAAAATACTTTTCAGTTTCGTCTAATTTTGTTGTTGA
JMFS134D04+ AACACGAGTAATCTCAAGCAATCAAAAATACTTTTCAGTTTCGTCTAATTTTGTTGTTGA
JMFN003E13+ AACACGAGTAATCTCAAGCAATCAAAAATACTTTTCAGTTTCGTCTAATTTTGTTGTTGA
JMFS023E11+ AACACGAGTAATCTCAAGCAATCAAAAATACTTTTCAGTTTCGTCTAATTTTGTTGTTGA
JMFN013P24+ AACACGAGTAATCTCAAGCAATCAAAAATACTTTTCAGTTTCGTCTAATTTTGTTGTTGA
JMFN042O03+ AACACGAGTAATCTCAAGCAATCAAAAATACTTTTCAGTTTCGTCTAATTTTGTTGTTGA
JMFF003I01+ AACACGAGTAATCTCAAGCAATCAAAAATACTTTTCAGTTTCGTCTAATTTTGTTGTTGA
rJMFF019H21- AACACGAGTAATCTCAAGCAATCAAAAATACTTTTCAGTTTCGTCTAATTTTGTTGTTGA
rJMFF003I01- AACACGAGTAATCTCAAGCAATCAAAAATACTTTTCAGTTTCGTCTAATTTTGTTGTTGA
JMFF011F23+ ACACGAGTAATCTCAAGCAATCAAAAATACTTTTCAGTTTCGTCTAATTTTGTTGTTGA
JMFF019H21+ AACACGAGTAATCTCAAGCAATCAAAAATACTTTTCAGTTTCGTCTAATTTTGTTGTTGA
____________________________________________________________
consensus AACACGAGTAATCTCAAGCAATCAAAAATACTTTTCAGTTTCGTCTAATTTTGTTGTTGA
. : . : . : . : . : . :
JMFN044E08+ GCAGAGCCGCTCTCATCTCCGCCGCGTCCATCTCCTTCGCGATATTCTCCGGCCGGTAGT
JMFN044B17+ GCAGAGCCGCTCTCATCTCCGCCGCGTCCATCTCCTTCGCGATATTCTCCGGCCGGTAGT
JMFS134D04+ GCAGAGCCGCTCTCATCTCCGCCGCGTCCATCTCCTTCGCGATATTCTCCGGCCGGTAGT
JMFN003E13+ GCAGAGCCGCTCTCATCTCCGCCGCGTCCATCTCCTTCGCGATATTCTCCGGCCGGTAGT
JMFS023E11+ GCAGAGCCGCTCTCATCTCCGCCGCGTCCATCTCCTTCGCGATATTCTCCGGCCGGTAGT
JMFN013P24+ GCAGAGCCGCTCTCATCTCCGCCGCGTCCATCTCCTTCGCGATATTCTCCGGCCGGTAGT
JMFN042O03+ GCAGAGCCGCTCTCATCTCCGCCGCGTCCATCTCCTTCGCGATATTCTCCGGCCGGTAGT
JMFF003I01+ GCAGAGCCGCTCTCATCTCCGCCGCGTCCATCTCCTTCGCGATATTCTCCGGCCGGTAGT
rJMFF019H21- GCAGAGCCGCTCTCATCTCCGCCGCGTCCATCTCCTTCGCGATATTCTCCGGCCGGTAGT
rJMFF003I01- GCAGAGCCGCTCTCATCTCCGCCGCGTCCATCTCCTTCGCGATATTCTCCGGCCGGTAGT
JMFF011F23+ GCAGAGCCGCTCTCATCTCCGCCGCGTCCATCTCCTTCGCGATATTCTCCGGCCGGTAGT
JMFF019H21+ GCAGAGCCGCTCTCATCTCCGCCGCGTCCATCTCCTTCGCGATATTCTCCGGCCGGTAGT
____________________________________________________________
consensus GCAGAGCCGCTCTCATCTCCGCCGCGTCCATCTCCTTCGCGATATTCTCCGGCCGGTAGT
. : . : . : . : . : . :
JMFN044E08+ ACCCGGTGACGGGGTC
JMFN044B17+ ACCCGGTGACGGGGTCCGGCACCCACGAAGTTTCCTTTCTCGACGCTTATCCAGCCTTCT
JMFS134D04+ ACCCGGTGACGGGGTCCGGCACCCACGAAGTTTCCTTTCTCGACGCTTCTCCAGCCTTCT
JMFN003E13+ ACCCGGTGACGGGGTCCGGCACCCACGAAGTTTCCTTTCTCGACGCTTCTCCAGCCTTCT
JMFS023E11+ ACCCGGTGACGGGGTCCGGCACCCACGAAGTTTCCTTTCTCGACGCTTCTCCAGCCTTCT
JMFN013P24+ ACCCGGTGACGGGGTCCGGCACCCACGAAGTTTCCTTTCTCGACGCTTCTCCAGCCTTCT
JMFN042O03+ ACCCGGTGACGGGGTCCGGCACCCACGAAGTTTCCTTTCTCGACGCTTCTCCAGCCTTCT
JMFF003I01+ ACCCGGTGACGGGGTCCGGCACCCACGAAGTTTCCTTTCTCGACGCTTCTCCAGCCTTCT
rJMFF019H21- ACCCGGTGACGGGGTCCGGCACCCACGAAGTTTCCTTTCTCGACGCTTCTCCAGCCTTCT
rJMFF003I01- ACCCGGTGACGGGGTCCGGCACCCACGAAGTTTCCTTTCTCGACGCTTCTCCAGCCTTCT
JMFF011F23+ ACCCGGTGACGGGGTCCGGCACCCACGAAGTTTCCTTTCTCGACGCTTCTCCAGCCTTCT
JMFF019H21+ ACCCGGTGACGGGGTCCGGCACCCACGAAGTTTCCTTTCTCGACGCTTCTCCAGCCTTCT
____________________________________________________________
consensus ACCCGGTGACGGGGTCCGGCACCCACGAAGTTTCCTTTCTCGACGCTTCTCCAGCCTTCT
. : . : . : . : . : . :
JMFN044B17+ TCATCACCCCGCCGCCGGACACTTTTCCCTGCGACGCCGCCGCCGCGGCGTACCCGCGCC
JMFS134D04+ TCATCACCCCGCCGCCGGACACTTTTCCCTGCGACGCCGCCGCCGCGGCGTACCCGCGCC
JMFN003E13+ TCATCACCCCGCCGCCGGACACTTTTCCCTGCGACGCCGCCGCCGCGGCGTACCCGCGCC
JMFS023E11+ TCATCACCCCGCCGCCGGACACTTTTCCCTGCGACGCCGCCGCCGCGGCGTACCCGCGCC
JMFN013P24+ TCATCACCCCGCCGCCGGACACTTTTCCCTGCGACGCCGCCGCCGCGGCGTACCCGCGCC
JMFN042O03+ TCATCACCCCGCCGCCGGACACTTTTCCCTGCGACGCCGCCGCCGCGGCGTACCCGCGCC
JMFF003I01+ TCATCACCCCGCCGCCGGACACTTTTCCCTGCGACGCCGCCGCCGCGGCGTACCCGCGCC
rJMFF019H21- TCATCACCCCGCCGCCGGACACTTTTCCCTGCGACGCCGCCGCCGCGGCGTACCCGCGCC
rJMFF003I01- TCATCACCCCGCCGCCGGACACTTTTCCCTGCGACGCCGCCGCCGCGGCGTACCCGCGCC
JMFF011F23+ TCATCACCCCGCCGCCGGACACTTTTCCCTGCGACGCCGCCGCCGCGGCGTACCCGCGCC
JMFF019H21+ TCATCACCCCGCCGCCGGACACTTTTCCCTGCGACGCCGCCGCCGCGGCGTACCCGCGCC
____________________________________________________________
consensus TCATCACCCCGCCGCCGGACACTTTTCCCTGCGACGCCGCCGCCGCGGCGTACCCGCGCC
. : . : . : . : . : . :
JMFN044B17+ TCACAGCGACGGAGACCCTGTCGGCGACGTAGGCGGAGACGAGCTTGGCGTTGGAGAAAG
JMFS134D04+ TCACAGCGACGGAGACCCTGTCGGCGACGTAGGCGGAGACGAGCTTGGCGTTGGAGAAAG
JMFN003E13+ TCACAGCGACGGAGACCCTGTCGGCGACGTAGGCGGAGACGAGCTTGGCGTTGGAGAAAG
JMFS023E11+ TCACAGCGACGGAGACCCTGTCGGCGACGTAGGCGGAGACGAGCTTGGCGTTGGAGAAAG
JMFN013P24+ TCACAGCGACGGAGACCCTGTCGGCGACGTAGGCGGAGACGAGCTTGGCGTTGGAGAAAG
JMFN042O03+ TCACAGCGACGGAGACCCTGTCGGCGACGTAGGCGGAGACGAGCTTGGCGTTGGAGAAAG
JMFF003I01+ TCACAGCGACGGAGACCCTGTCGGCGACGTAGGCGGAGACGAGCTTGGCGTTGGAGAAAG
rJMFF019H21- TCACAGCGACGGAGACCCTGTCGGCGACGTAGGCGGAGACGAGCTTGGCGTTGGAGAAAG
rJMFF003I01- TCACAGCGACGGAGACCCTGTCGGCGACGTAGGCGGAGACGAGCTTGGCGTTGGAGAAAG
JMFF011F23+ TCACAGCGACGGAGACCCTGTCGGCGACGTAGGCGGAGACGAGCTTGGCGTTGGAGAAAG
JMFF019H21+ TCACAGCGACGGAGACCCTGTCGGCGACGTAGGCGGAGACGAGCTTGGCGTTGGAGAAAG
____________________________________________________________
consensus TCACAGCGACGGAGACCCTGTCGGCGACGTAGGCGGAGACGAGCTTGGCGTTGGAGAAAG
. : . : . : . : . : . :
JMFN044B17+ AGCGAGCCATTTCGTCGTCGATCGATGGAAGGCAACAATTCACAACACTTGCGTAATTGA
JMFS134D04+ AGCGAGCCATTTCGTCGTCGATCGATGGAAGGCAACAATTCACAACACTTGCGTAATTGA
JMFN003E13+ AGCGAGCCATTTCGTCGTCGATCGATGGAAGGCAACAATTCACAACACTTGCGTAATTGA
JMFS023E11+ AGCGAGCCATTTCGTCGTCGATCGATGGAAGGCAACAATTCACAACACTTGCGTAATTGA
JMFN013P24+ AGCGAGCCATTTCGTCGTCGATCGATGGAAGGCAACAATTCACAACACTTGCGTAATTGA
JMFN042O03+ AGCGAGCCATTTCGTCGTCGATCGATGGAAGGCAACAATTCACAACACTTGCGTAATTGA
JMFF003I01+ AGCGAGCCATTTCGTCGTCGATCGATGGAAGGCAACAATTCACAACACTTGCGTAATTGA
rJMFF019H21- AGCGAGCCATTTCGTCGTCGATCGATGGAAGGCAACAATTCACAACACTTGCGTAATTGA
rJMFF003I01- AGCGAGCCATTTCGTCGTCGATCGATGGAAGGCAACAATTCACAACACTTGCGTAATTGA
JMFF011F23+ AGCGAGCCATTTCGTCGTCGATCGATGGAAGGCAACAATTCACAACACTTGCGTAATTGA
JMFF019H21+ AGCGAGCCATTTCGTCGTCGATCGATGGAAGGCAACAATTCACAACACTTGCGTAATTGA
____________________________________________________________
consensus AGCGAGCCATTTCGTCGTCGATCGATGGAAGGCAACAATTCACAACACTTGCGTAATTGA
. : . : . : . : . : . :
JMFN044B17+ GAAGAAAACAAAAGCTAATTATAGAAAGTATGTGAAGTGTTT
JMFS134D04+ GAAGAAAACAAAAGCTAATTATAGAAAG
JMFN003E13+ GAAGAAAACAAAAGCTAATTATAGAAAGTATGTGAAGTGTTT
JMFS023E11+ GAAGAAAACAAAAGCTAATTATAGAAAGTATGTGAAGTGTT
JMFN013P24+ GAAGAAAACAAAAGCTAATTATAGAAAGTATGTGAAGTGTTT
JMFN042O03+ GAAGAAAACAAAAGCTAATTATAGAAAGTATGTGAAGTGTTTG
JMFF003I01+ GAAGAAAACAAAAGCTAATTATAGAAAGTATGTGAAGTGTTTGGGCTATGGAAAGA
rJMFF019H21- GAAGAAAACAAAAGCTAATTATAGAAAGTATGTGAAGTGTTTGGGCTATGGAAAGA
rJMFF003I01- GAAGAAAACAAAAGCTAATTATAGAAAGTATGTGAAGTGTTTGGGCTATGGAAAGA
JMFF011F23+ GAAGAAAACAAAAGCTAATTATAGAAAGTATGTGAAGTGTTTGGGCTATGGAAAGA
JMFF019H21+ GAAGAAAACAAAAGCTAATTATAGAAAGTATGTGAAGTGTTTGGGCTATGGAAAGACGAT
____________________________________________________________
consensus GAAGAAAACAAAAGCTAATTATAGAAAGTATGTGAAGTGTTTGGGCTATGGAAAGACGAT