Contig 011527:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF019F18Sequence567011527 (2)ref|XP_009591093.1|3e-60PREDICTED: peroxisomal membrane protein PMP22-like [Nicotiana tomentosiformis]732011527 (2)ref|XP_009619511.1|2e-92PREDICTED: peroxisomal membrane protein PMP22-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMFF019F18-                                               TTATTATTAGGCCATAATAAAGG
                      ____________________________________________________________
consensus                                                  TTATTATTAGGCCATAATAAAGG
 
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rJMFF019F18-          ATTTCATTTCAACTGAAAAGCATGAATCATTTAACCATAATCTCATCAAATACAATGTTT
                      ____________________________________________________________
consensus             ATTTCATTTCAACTGAAAAGCATGAATCATTTAACCATAATCTCATCAAATACAATGTTT
 
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rJMFF019F18-          TCACTACCATCAAACCGAATAGATATGTAACATATAACGCGTATAGTACAAATGTTATCG
                      ____________________________________________________________
consensus             TCACTACCATCAAACCGAATAGATATGTAACATATAACGCGTATAGTACAAATGTTATCG
 
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rJMFF019F18-          CTAGCAACAGATCACACGCTACGACGATATCCAATGCTACTGAACTTACATATATAGGAG
                      ____________________________________________________________
consensus             CTAGCAACAGATCACACGCTACGACGATATCCAATGCTACTGAACTTACATATATAGGAG
 
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rJMFF019F18-          ACGGGTAGCCAGGTGTGCTTTTCTCGGGTACGCTTAAGCTTTCTTGATTGCCATTGTCCT
                      ____________________________________________________________
consensus             ACGGGTAGCCAGGTGTGCTTTTCTCGGGTACGCTTAAGCTTTCTTGATTGCCATTGTCCT
 
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rJMFF019F18-          CGCACGCAGGTTCAAAAATATCCCCCAACCGCAGGCAATGACGCTATGAAAGATAACTCG
JMFF019F18+                                            GGCAATGACGCTATGAAAGATAACTCG
                      ____________________________________________________________
consensus             CGCACGCAGGTTCAAAAATATCCCCCAACCGCAGGCAATGACGCTATGAAAGATAACTCG
 
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rJMFF019F18-          GAACTGGAGTGGTATGTACTGGTGGTTCACCCATCCCACGACCGGCCAGAACGTCCATGC
JMFF019F18+           GAACTGGAGTGGTATGTACTGGTGGTTCACCCATCCCACGACCGGCCAGAACGTCCATGC
                      ____________________________________________________________
consensus             GAACTGGAGTGGTATGTACTGGTGGTTCACCCATCCCACGACCGGCCAGAACGTCCATGC
 
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rJMFF019F18-          T-GTATACTGGACTTTCGGATACTCTCTTGCAATGTTAGATTTCACTTGGACCCACGGTC
JMFF019F18+           TGGTATACTGGACTTTCGGATACTCTCTTGCAATGTTAGATTTCACTTGGACCCACGGTC
                      ____________________________________________________________
consensus             TGGTATACTGGACTTTCGGATACTCTCTTGCAATGTTAGATTTCACTTGGACCCACGGTC
 
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rJMFF019F18-          TTCCCTCGATAACTAACCCGTAGTATAGCATGAAAAGCAAGTTGTTCCAAGGGGACGATG
JMFF019F18+           TTCCCTCGATAACTAACCCGTAGTATAGCATGAAAAGCAAGTTGTTCCAAGGGGACGATG
                      ____________________________________________________________
consensus             TTCCCTCGATAACTAACCCGTAGTATAGCATGAAAAGCAAGTTGTTCCAAGGGGACGATG
 
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rJMFF019F18-          TCACTTGTTCCAGCACCACCTTCTTAGCAACCGTTTTAGTATCCTTTTTGCCCTTGAAAA
JMFF019F18+           TCACTTGTTCCAGCACCACCTTCTTAGCAACCGTTTTAGTATCCTTTTTGCCCTTGAAAA
                      ____________________________________________________________
consensus             TCACTTGTTCCAGCACCACCTTCTTAGCAACCGTTTTAGTATCCTTTTTGCCCTTGAAAA
 
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rJMFF019F18-          TTTTGTCCAGCAATATATGAAGAAAATGCCCAAATGGTCCAAGATGTGCAAAACCAAAAA
JMFF019F18+           TTTTGTCCAGCAATATATGAAGAAAATGCCCAAATGGTCCAAGATGTGCAAAACCAAAAA
                      ____________________________________________________________
consensus             TTTTGTCCAGCAATATATGAAGAAAATGCCCAAATGGTCCAAGATGTGCAAAACCAAAAA
 
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rJMFF019F18-          CCACTTTGAGAATCAAACGTTTGATTTGAAGCTTCTGAATGCCAGTGATCTTCTGGGCCA
JMFF019F18+           CCACTTTGAGAATCAAACGTTTGATTTGAAGCTTCTGAATGCCAGTGATCTTCTGGGCCA
                      ____________________________________________________________
consensus             CCACTTTGAGAATCAAACGTTTGATTTGAAGCTTCTGAATGCCAGTGATCTTCTGGGCCA
 
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rJMFF019F18-          CTATATCACTGATTGCTGACAGCACTCCAGCAGTTATTGCCTTTGTTCTG          
JMFF019F18+           CTATATCACTGATTGCTGACAGCACTCCAGCAGTTATTGCCTTTGTTCTGAGAGGATGTT
                      ____________________________________________________________
consensus             CTATATCACTGATTGCTGACAGCACTCCAGCAGTTATTGCCTTTGTTCTGAGAGGATGTT
 
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JMFF019F18+           GCTGGAGCTGTAGCAGGTACTGCTGCAAGCCTCTCTTCGCTATTGACCCCATTTCTCTCC
                      ____________________________________________________________
consensus             GCTGGAGCTGTAGCAGGTACTGCTGCAAGCCTCTCTTCGCTATTGACCCCATTTCTCTCC
 
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JMFF019F18+           AAGAAAAGAGGGAATCTTTCTTTCTTTCCCTCGCGCTGGTCAGTTACTGAGACGCCGAGT
                      ____________________________________________________________
consensus             AAGAAAAGAGGGAATCTTTCTTTCTTTCCCTCGCGCTGGTCAGTTACTGAGACGCCGAGT