Contig 011521:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMFF017D17-                                                                   GAG
                      ____________________________________________________________
consensus                                                                      GAG
 
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rJMFF017D17-          GATCAAACAACAAATAAAGATCTAGTCACCACCATCAACAAATATTGTTAAAATGATGAA
                      ____________________________________________________________
consensus             GATCAAACAACAAATAAAGATCTAGTCACCACCATCAACAAATATTGTTAAAATGATGAA
 
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rJMFF017D17-          TTATAGTCCAAAAGATCATCGNGAGAGGATCGGATCANAGCTATTCTATCACAAATGCAT
rJMSF053G11-                                GAGAGGATCGGATCAGAGCTATTCTATCACAAATGCAT
                      ____________________________________________________________
consensus             TTATAGTCCAAAAGATCATCGNGAGAGGATCGGATCAGAGCTATTCTATCACAAATGCAT
 
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rJMFF017D17-          ATCCAAACAATGATTTCTCCCTTGTTCTGAACAGTAGAATAAGTGCTAGAATGTTTNTCN
rJMSF053G11-          ATCCAAACAATGATTTCTCCCTTGTTCTGAACAGTAGAATAAGTGCTAGAATGTTTTTCA
                      ____________________________________________________________
consensus             ATCCAAACAATGATTTCTCCCTTGTTCTGAACAGTAGAATAAGTGCTAGAATGTTTTTCA
 
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rJMFF017D17-          CACATTCACATTCAGAGACTCCAAAGCTAATAAGAACACTCCATGGCTTAAAGAGCAGTA
rJMSF053G11-          CACATTCACATTCAGAGACTCCAAAGCTAATAAGAACACTCCATGGCTTAAAGAGCAGTA
                      ____________________________________________________________
consensus             CACATTCACATTCAGAGACTCCAAAGCTAATAAGAACACTCCATGGCTTAAAGAGCAGTA
 
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rJMFF017D17-          AAAGGAACGTTTGACGCAAACCGGGTAAGATATGCTTCTGCAAGCATTTGGCCAAGTTGA
rJMSF053G11-          GAAGGAACGTTTGACGCAAACCGGGTAAGATATGCTTCTGCAAGCATTTGGCCAAGTTGA
                      ____________________________________________________________
consensus             GAAGGAACGTTTGACGCAAACCGGGTAAGATATGCTTCTGCAAGCATTTGGCCAAGTTGA
 
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rJMFF017D17-          ACCTGGGCTTCTGTGGTCAAATGGAGATTATCTTCCTTGAGCTCCAATCCCCAGGCATCA
rJMSF053G11-          ACCTGGGCTTCTGTGGTCAAATGGAGATTATCTTCCTTGAGCTCCAATCCCCAGGCATCA
                      ____________________________________________________________
consensus             ACCTGGGCTTCTGTGGTCAAATGGAGATTATCTTCCTTGAGCTCCAATCCCCAGGCATCA
 
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rJMFF017D17-          ATGCACACGACATTTGGAAGGTCAATTTCCTTTTGCGCTTTTCTTACTTCCTCAATGTAT
rJMSF053G11-          ATGCACACGACATTTGGAAGGTCAATTTCCTTTTGCGCTTTTCTTACTTCCTCAATGTAT
                      ____________________________________________________________
consensus             ATGCACACGACATTTGGAAGGTCAATTTCCTTTTGCGCTTTTCTTACTTCCTCAATGTAT
 
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rJMFF017D17-          TTTTTATCCCCTGATGCAATAGCAACCTGAATAATTGGCAGAGTTGGCAAATCCAAATCG
rJMSF053G11-          TTTTTATCCCCTGATGCAATAGCAACCTGAATAATTGGCAGAGTTGGCAAATCCAAATCG
                      ____________________________________________________________
consensus             TTTTTATCCCCTGATGCAATAGCAACCTGAATAATTGGCAGAGTTGGCAAATCCAAATCG
 
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rJMFF017D17-          TTGCGGATGTTGTGTATTAGTGTTTCCATATTAGCTCTGTAACTCTCGGCATCATGTTTT
rJMSF053G11-          TTGCGGATGTTGTGTATTAGTGTTTCCATATTAGCTCTGTAACTCTCGGCATCATGTTTT
                      ____________________________________________________________
consensus             TTGCGGATGTTGTGTATTAGTGTTTCCATATTAGCTCTGTAACTCTCGGCATCATGTTTT
 
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rJMFF017D17-          GATGATGTATCACTCTCACCCTGGTACCACAGCAATGCCTTGATCTCGCAACCGCCATCA
rJMSF053G11-          GATGATGTATCACTCTCACCCTGGTACCACAGCAATGCCTTGATCTCGCAACCGCCATCA
                      ____________________________________________________________
consensus             GATGATGTATCACTCTCACCCTGGTACCACAGCAATGCCTTGATCTCGCAACCGCCATCA
 
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rJMFF017D17-          CGAATGGCANATTTCGCTCTCTTCACCATGTTCTCATACAAATGTTCCCCGCGTGCCCAC
rJMSF053G11-          CGAATGGCAGATTTCGCTCTCTTCACCATGTTCTCATACAAATGTTCCCCGCGTGCCCAC
JMSF053G11+            GAATGGCAGATTTCGCTNTNTTCACCATGTTNTCATACAAATGTTCCCCGCGTGCCCAN
JMFF017D17+            GAATGGCAGATTTCGCTCTCTTCACCATGTTCTCATACAAATGTTCCCCGCGTGCCCAC
                      ____________________________________________________________
consensus             CGAATGGCAGATTTCGCTCTCTTCACCATGTTCTCATACAAATGTTCCCCGCGTGCCCAC
 
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rJMFF017D17-          TCCTTTATCGCAGNTCCACCTACCGCACAGGGAACAAGGCCAAAAACACCCACACTGTCC
rJMSF053G11-          TCCTTTATCGCAGTTCCACCTACCGCACAGGGAACAAGGCCAAAAACACCCACACTGTCC
JMSF053G11+           TCCTTTATCGCAGTTCCACCTACCGCACAGGGAACAAGGCCAAAAACACCCACACTGTCC
JMFF017D17+           TCCTTTATCGCAGTTCCACCTACCGCACAGGGAACAAGGCCAAAAACACCCACACTGTCC
                      ____________________________________________________________
consensus             TCCTTTATCGCAGTTCCACCTACCGCACAGGGAACAAGGCCAAAAACACCCACACTGTCC
 
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rJMFF017D17-          TTTACCGCATTTG                                               
rJMSF053G11-          TTTACCGCATTTGAAAACGACATTCCTGGTCCAACACCACAGGTCTTCTTGGCATCAATG
JMSF053G11+           TTTACCGCATTTGAAAACGACATTCCTGGTCCAACACCACAGGTCTTCTTGGCATCAATG
JMFF017D17+           TTTACCGCATTTGAAAACGACATTCCTGGTCCAACACCACAGGTCTTCTTGGCATCAATG
                      ____________________________________________________________
consensus             TTTACCGCATTTGAAAACGACATTCCTGGTCCAACACCACAGGTCTTCTTGGCATCAATG
 
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rJMSF053G11-          TCATGATGCAGTGGTTCACAAGCCACCTCCCAGCAGAGCTGTGCACTAAGACGGAAGATT
JMSF053G11+           TCATGATGCAGTGGTTCACAAGCCACCTCCCAGCAGAGCTGTGCACTAAGACGGAAGATT
JMFF017D17+           TCATGATGCAGTGGTTCACAAGCCACCTCCCAGCAGAGCTGTGCACTAAGACGGAAGATT
                      ____________________________________________________________
consensus             TCATGATGCAGTGGTTCACAAGCCACCTCCCAGCAGAGCTGTGCACTAAGACGGAAGATT
 
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rJMSF053G11-          TTGGATGAGTCGGGGCTACATTCAGGAGGAACTACGCCATCCCATTTCTTGTTCTTGTCT
JMSF053G11+           TTGGATGAGTCGGGGCTACATTCAGGAGGAACTACGCCATCCCATTTCTTGTTCTTGTCT
JMFF017D17+           TTGGATGAGTCGGGGCTACATTCAGGAGGAACTACGCCATCCCATTTCTTGTTCTTGTCT
                      ____________________________________________________________
consensus             TTGGATGAGTCGGGGCTACATTCAGGAGGAACTACGCCATCCCATTTCTTGTTCTTGTCT
 
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rJMSF053G11-          ACTCCACCACGACCAGCCATGTTGCTTTGGCCCGATAGAATGAATATATTCTTAGGCGGC
JMSF053G11+           ACTCCACCACGACCAGCCATGTTGCTTTGGCCCGATAGAATGAATATATTCTTAGGCGGC
JMFF017D17+           ACTCCACCACGACCAGCCATGTTGCTTTGGCCCGATAGAATGAATATATTCTTAGGCGGC
                      ____________________________________________________________
consensus             ACTCCACCACGACCAGCCATGTTGCTTTGGCCCGATAGAATGAATATATTCTTAGGCGGC
 
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rJMSF053G11-          TTGACTTCATGATTCTGGGNTGAATNCGGGA                             
JMSF053G11+           TTGACTTCATGATTCTGGGTTGAATTCGGGAGTTCCATATGAAAAATATGGTAAATAAGG
JMFF017D17+           TTGACTTCATGATTCTGGGTTGAATTCGGGAGTTCCATATGAAAAATATGGTAAATAAGG
                      ____________________________________________________________
consensus             TTGACTTCATGATTCTGGGTTGAATTCGGGAGTTCCATATGAAAAATATGGTAAATAAGG
 
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JMSF053G11+           GATGCTCCCAGATTGTCTCAGGCCAGATCTGGATCAAGTAGGGCAATCGAATCGCAAAAA
JMFF017D17+           GATGCTCCCAGATTGTCTCAGGCCAGATCTGGATCAAGTAGGGCAATCGAATCGCAAAAA
                      ____________________________________________________________
consensus             GATGCTCCCAGATTGTCTCAGGCCAGATCTGGATCAAGTAGGGCAATCGAATCGCAAAAA
 
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JMSF053G11+           ATTGACAGAGAAATACTTT                                         
JMFF017D17+           ATTGACAGAGAAATACTTTGAACTCACAATGGTACACTGACTTTGGGAAAATGAGTGACT
                      ____________________________________________________________
consensus             ATTGACAGAGAAATACTTTGAACTCACAATGGTACACTGACTTTGGGAAAATGAGTGACT