Contig 011519:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF016L06Sequence576011519 (5)gb|KDO79974.1|2e-88hypothetical protein CISIN_1g008569mg [Citrus sinensis]763012318 (4)ref|XP_009594923.1|3e-59PREDICTED: clathrin interactor EPSIN 1-like [Nicotiana tomentosiformis] ref|XP_0
JMFF026C11Sequence539011519 (5)gb|KDO79974.1|1e-81hypothetical protein CISIN_1g008569mg [Citrus sinensis]646012318 (4)ref|XP_009594923.1|6e-34PREDICTED: clathrin interactor EPSIN 1-like [Nicotiana tomentosiformis] ref|XP_0
JMFF049C10Sequence388011519 (5)gb|KDO79974.1|2e-53hypothetical protein CISIN_1g008569mg [Citrus sinensis]
JMSF040O24Sequence681011519 (5)gb|KDO79974.1|2e-109hypothetical protein CISIN_1g008569mg [Citrus sinensis]805012318 (4)ref|XP_009594923.1|1e-59PREDICTED: clathrin interactor EPSIN 1-like [Nicotiana tomentosiformis] ref|XP_0
JMSF052L16Sequence668011519 (5)gb|KDO79974.1|2e-109hypothetical protein CISIN_1g008569mg [Citrus sinensis]908012318 (4)ref|XP_009594923.1|1e-61PREDICTED: clathrin interactor EPSIN 1-like [Nicotiana tomentosiformis] ref|XP_0

Alignment

This contig is upended


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JMSF052L16+                                               TCCTTGTAAGCAAATGAGTCACTA
JMSF040O24+                                                            ATGAGTCACTA
                      ____________________________________________________________
consensus                                                 TCCTTGTAAGCAAATGAGTCACTA
 
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JMSF052L16+           TCAGCATTATTGCCAAAACCTCCATATCGACTGCCACTACTAAGAGAGGCAGACCCTGAC
JMSF040O24+           TCAGCATTATTGCCAAAACCTCCATATCGACTGCCACTACTAAGAGAGGCAGACCCTGAC
                      ____________________________________________________________
consensus             TCAGCATTATTGCCAAAACCTCCATATCGACTGCCACTACTAAGAGAGGCAGACCCTGAC
 
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JMSF052L16+           TTGTATGTTACTCCCGTAGATGATAGTCCAAAATACTTTTCACGATTTGCAGAAGCCTTG
JMSF040O24+           TTGTATGTTACTCCCGTAGATGATAGTCCAAAATACTTTTCACGATTTGCAGAAGCCTTG
                      ____________________________________________________________
consensus             TTGTATGTTACTCCCGTAGATGATAGTCCAAAATACTTTTCACGATTTGCAGAAGCCTTG
 
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JMSF052L16+           TTCCTAACTTCATGTATCTTGTCCTTGTCATTTAAAAGTGACACAATGTTTTCTGCCTTC
JMSF040O24+           TTCCTAACTTCATGTATCTTGTCCTTGTCATTTAAAAGTGACACAATGTTTTCTGCCTTC
JMFF026C11+                                                                      C
JMFF016L06+                                   TTGTCATTTAAAAGTGACACAATGTTTTCTGCCTTC
                      ____________________________________________________________
consensus             TTCCTAACTTCATGTATCTTGTCCTTGTCATTTAAAAGTGACACAATGTTTTCTGCCTTC
 
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JMSF052L16+           TTCCTTACGTTAATTCCCATATCCTTTCCACTTGGTTCGACATACTCAAATTTTGTAAGA
JMSF040O24+           TTCCTTACGTTAATTCCCATATCCTTTCCACTTGGTTCGACATACTCAAATTTTGTAAGA
JMFF026C11+           TTCCTTACGTTAATTCCCATATCCTTTCCACTTGGTTCGACATACTCAAATTTTGTAAGA
JMFF016L06+           TTCCTTACGTTAATTCCCATATCCTTTCCACTTGGTTCGACATACTCAAATTTTGTAAGA
                      ____________________________________________________________
consensus             TTCCTTACGTTAATTCCCATATCCTTTCCACTTGGTTCGACATACTCAAATTTTGTAAGA
 
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JMSF052L16+           GACGAAATCTGATAAGTATGTTCTACGATCTCATCCACGGAACGTTCTGATCCATGTGCC
JMSF040O24+           GACGAAATCTGATAAGTATGTTCTACGATCTCATCCACGGAACGTTCTGATCCATGTGCC
JMFF049C10+                                                                    GCC
JMFF026C11+           GACGAAATCTGATAAGTATGTTCTACGATCTCATCCACGGAACGTTCTGATCCATGTGCC
JMFF016L06+           GACGAAATCTGATAAGTATGTTCTACGATCTCATCCACGGAACGTTCTGATCCATGTGCC
                      ____________________________________________________________
consensus             GACGAAATCTGATAAGTATGTTCTACGATCTCATCCACGGAACGTTCTGATCCATGTGCC
 
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JMSF052L16+           ACCAAATACTCTAGAACAACCAATGCCTTGTAGACATAACGCCAGTTCTTGTCAGTCTCT
JMSF040O24+           ACCAAATACTCTAGAACAACCAATGCCTTGTAGACATAACGCCAGTTCTTGTCAGTCTCT
JMFF049C10+           ACCAAATACTCTAGAACAACCAATGCCTTGTAGACATAACGCCAGTTCTTGTCAGTCTCT
JMFF026C11+           ACCAAATACTCTAGAACAACCAATGCCTTGTAGACATAACGCCAGTTCTTGTCAGTCTCT
JMFF016L06+           ACCAAATACTCTAGAACAACCAATGCCTTGTAGACATAACGCCAGTTCTTGTCAGTCTCT
                      ____________________________________________________________
consensus             ACCAAATACTCTAGAACAACCAATGCCTTGTAGACATAACGCCAGTTCTTGTCAGTCTCT
 
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JMSF052L16+           TTCAATCTTGTCCAAAGAACATTCATAACAATTGAACATTCAGAAAATTTCTTTGTAGCC
JMSF040O24+           TTCAATCTTGTCCAAAGAACATTCATAACAATTGAACATTCAGAAAATTTCTTTGTAGCC
JMFF049C10+           TTCAATCTTGTCCAAAGAACATTCATAACAATTGAACATTCAGAAAATTTCTTTGTAGCC
JMFF026C11+           TTCAATCTTGTCCAAAGAACATTCATAACAATTGAACATTCAGAAAATTTCTTTGTAGCC
JMFF016L06+           TTCAATCTTGTCCAAAGAACATTCATAACAATTGAACATTCAGAAAATTTCTTTGTAGCC
                      ____________________________________________________________
consensus             TTCAATCTTGTCCAAAGAACATTCATAACAATTGAACATTCAGAAAATTTCTTTGTAGCC
 
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JMSF052L16+           TGTGCTATCTCAGCCATTGCAGTACCATGAGGGCCCCAAGGTTCATCGTCCGTCGCATCC
JMSF040O24+           TGTGCTATCTCAGCCATTGCAGTACCATGAGGGCCCCAAGGTTCATCGTCCGTCGCATCC
JMFF049C10+           TGTGCTATCTCAGCCATTGCAGTACCATGAGGGCCCCAAGGTTCATCGTCCGTCGCATCC
JMFF026C11+           TGTGCTATCTCAGCCATTGCAGTACCATGAGGGCCCCAAGGTTCATCGTCCGTCGCATCC
JMFF016L06+           TGTGCTATCTCAGCCATTGCAGTACCATGAGGGCCCCAAGGTTCATCGTCCGTCGCATCC
                      ____________________________________________________________
consensus             TGTGCTATCTCAGCCATTGCAGTACCATGAGGGCCCCAAGGTTCATCGTCCGTCGCATCC
 
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JMSF052L16+           AATACCTTCTGTTCGATCTCAGGTACCTTCAACACTTTCAAATTCACCTCCCTCTTTATT
JMSF040O24+           AATACCTTCTGTTCGATCTCAGGTACCTTCAACACTTTCAAATTCACCTCCCTCTTTATT
JMFF049C10+           AATACCTTCTGTTCGATCTCAGGTACCTTCAACACTTTCAAATTCACCTCCCTCTTTATT
JMFF026C11+           AATACCTTCTGTTCGATCTCAGGTACCTTCAACACTTTCAAATTCACCTCCCTCTTTATT
JMFF016L06+           AATACCTTCTGTTCGATCTCAGGTACCTTCAACACTTTCAAATTCACCTCCCTCTTTATT
                      ____________________________________________________________
consensus             AATACCTTCTGTTCGATCTCAGGTACCTTCAACACTTTCAAATTCACCTCCCTCTTTATT
 
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JMSF052L16+           TCGCGGACTGTTTGATCGATGACTTTCATGAAATCCATGGCTGGATCTTTGATTATCAAA
JMSF040O24+           TCGCGGACTGTTTGATCGATGACTTTCATGAAATCCATGGCTGGATCTTTGATTATCAAA
JMFF049C10+           TCGCGGACTGTTTGATCGATGACTTTCATGAAATCCATGGCTGGATCTTTGATTATCAAA
JMFF026C11+           TCGCGGACTGTTTGATCGATGACTTTCATGAAATCCATGGCTGGATCTTTGATTATCAAA
JMFF016L06+           TCGCGGACTGTTTGATCGATGACTTTCATGAAATCCATGGCTGGATCTTTGATTATCAAA
                      ____________________________________________________________
consensus             TCGCGGACTGTTTGATCGATGACTTTCATGAAATCCATGGCTGGATCTTTGATTATCAAA
 
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JMSF052L16+           TGAAAGCAACAATATGAAACGGAGATAAGATCAGATCAGATCT                 
JMSF040O24+           TGAAAGCAACAATATGAAACGGAGATAAGATCAGATCAGATCTGATCTAAGAAAAATATG
JMFF049C10+           TGAAAGCAACAATATGAAACGGAGATAAGATCAGATCAGATCTGATCTAAGAAAAATATG
JMFF026C11+           TGAAAGCAACAATATGAAACGGAGATAAGATCAGATCAGATCTGATCTAAGAAAAATATG
JMFF016L06+           TGAAAGCAACAATATGAAACGGAGATAAGATCAGATCAGATCTGATCTAAGAAAAATATG
                      ____________________________________________________________
consensus             TGAAAGCAACAATATGAAACGGAGATAAGATCAGATCAGATCTGATCTAAGAAAAATATG
 
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JMSF040O24+           GTGTCCT                                                     
JMFF049C10+           GTGTCCTGACGAAGAAGAAAATAT                                    
JMFF026C11+           GTGTCCTGACGAAGAAGAAAATATAGATAGGAGTTTGAAGGAACGCTCGTGATCAATT  
JMFF016L06+           GTGTCCTGACGAAGAAGAAAATATAGATAGGAGTTTGAAGGAACGCTCGTGATCAATTTT
                      ____________________________________________________________
consensus             GTGTCCTGACGAAGAAGAAAATATAGATAGGAGTTTGAAGGAACGCTCGTGATCAATTTT