Contig 011516:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMFF016D03-                                ACATATATTGATTTAAATAATAATTCTGCAGACCATAC
rJMSF052D01-                                     TATTGATTTAAATAATAATTCTGCAGACCATAC
                      ____________________________________________________________
consensus                                   ACATATATTGATTTAAATAATAATTCTGCAGACCATAC
 
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rJMFF016D03-          AAAAACGCAGTGCTAAAACTACATACATCTGCCAACTCAACCAATTCAACAAGTTCTTGA
rJMSF052D01-          AAAAACGCAGTGCTAAAACTACATACATCTGCCAACTCAACCAATTCAACAAGTTCTTGA
                      ____________________________________________________________
consensus             AAAAACGCAGTGCTAAAACTACATACATCTGCCAACTCAACCAATTCAACAAGTTCTTGA
 
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rJMFF016D03-          AGTCACTATTTACAGCTTCTTCTTCACTTCTCCAGTTCTCCTCCATTATCCTCATCACCA
rJMSF052D01-          AGTCACTATTTACAGCTTCTTCTTCACTTCTCCAGTTCTCCTCCATTATCCTCATCACCA
                      ____________________________________________________________
consensus             AGTCACTATTTACAGCTTCTTCTTCACTTCTCCAGTTCTCCTCCATTATCCTCATCACCA
 
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rJMFF016D03-          CACACCCAAAATTAAAGTTCAAATTATTAGGTAAAAATAAACAAAATTTAAAGAAATACA
rJMSF052D01-          CACACCCAAAATTAAAGTTCAAATTATTAGGTAAAAATAAACAAAATTTAAAGAAATACA
                      ____________________________________________________________
consensus             CACACCCAAAATTAAAGTTCAAATTATTAGGTAAAAATAAACAAAATTTAAAGAAATACA
 
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rJMFF016D03-          CAACACTCTAACACCACGTCCATGCATTACATTACATTACGTAGTTGTTTAGCTGCATGC
rJMSF052D01-          CAACACTCTAACACCACGTCCATGCATTACATTACATTACGTAGTTGTTTAGCTGCATGC
                      ____________________________________________________________
consensus             CAACACTCTAACACCACGTCCATGCATTACATTACATTACGTAGTTGTTTAGCTGCATGC
 
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rJMFF016D03-          TGCCTTATTAACATCATATCATCAGACCATGAAAAATTGCTTGCATGCATAAAAATTTCA
rJMSF052D01-          TGCCTTATTAACATCATATCATCAGACCATGAAAAATTGCTTGCATGCATAAAAATTTCA
                      ____________________________________________________________
consensus             TGCCTTATTAACATCATATCATCAGACCATGAAAAATTGCTTGCATGCATAAAAATTTCA
 
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rJMFF016D03-          CCCTCCAGATCAGATGATCATGATCATGATCACATGAGGGTGCAAGCGTGAGGGTTGTCG
rJMSF052D01-          CCCTCCAGATCAGATGATCATGATCATGATCACATGAGGGTGCAAGCGTGAGGGTTGTCG
                      ____________________________________________________________
consensus             CCCTCCAGATCAGATGATCATGATCATGATCACATGAGGGTGCAAGCGTGAGGGTTGTCG
 
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rJMFF016D03-          TCGCTGAAAATCTGAGGAGGATAGGCGTAATCCAAGTAGTATTTAGGGGGCATAGCCATG
rJMSF052D01-          TCGCTGAAAATCTGAGGAGGATAGGCGTAATCCAAGTAGTATTTAGGGGGCATAGCCATG
                      ____________________________________________________________
consensus             TCGCTGAAAATCTGAGGAGGATAGGCGTAATCCAAGTAGTATTTAGGGGGCATAGCCATG
 
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rJMFF016D03-          AACTCGTTCTTCTTCATTTCTGTCTCATCCATTTTCTTTTCGTCTTCTTCTCCCTCTTTC
rJMSF052D01-          AACTCGTTCTTCTTCATTTCTGTCTCATCCATTTTCTTTTCGTCTTCTTCTCCCTCTTTC
                      ____________________________________________________________
consensus             AACTCGTTCTTCTTCATTTCTGTCTCATCCATTTTCTTTTCGTCTTCTTCTCCCTCTTTC
 
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rJMFF016D03-          TTTTCCTCTTTCTTCTCCCCCTCTTTCTTCTCCTCATTGTCTTCCTTCTTCTCTTCTTCC
rJMSF052D01-          TTTTCCTCTTTCTTCTCCCCTTCTTTCTTCTCCTCATTGTCTTCCTTCTTCTCTTCTTCC
                      ____________________________________________________________
consensus             TTTTCCTCTTTCTTCTCCCCTTCTTTCTTCTCCTCATTGTCTTCCTTCTTCTCTTCTTCC
 
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rJMFF016D03-          TTCACTATGGAAGCTTGCTTCCCTGTTTTCTTGTACACGTCCTTCGCAAGCTTCTCTGGA
rJMSF052D01-          TTCACTATGGAAGCTTGCTTCCCTGTTTTCTTGTACACGTCCTTCGCAAGCTTCTCTGGA
JMSF052D01+                                           GTACACGTCCTTCGCAAGCTTCTCTGGA
                      ____________________________________________________________
consensus             TTCACTATGGAAGCTTGCTTCCCTGTTTTCTTGTACACGTCCTTCGCAAGCTTCTCTGGA
 
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rJMFF016D03-          TCCACCACGCCCTTTACCCTCACCTCATTGCTTCCAAGCTCCGTTGTCACTGATTCAACG
rJMSF052D01-          TCCACCACGCCCTTTACCCTCACCTCATTGCTTCCAAGCTCCGTTGTCACTGATTCAACG
JMSF052D01+           TCCACCACGCCCTTTACCCTCACCTCATTGCTTCCAAGCTCCGTTGTCACTGATTCAACG
                      ____________________________________________________________
consensus             TCCACCACGCCCTTTACCCTCACCTCATTGCTTCCAAGCTCCGTTGTCACTGATTCAACG
 
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rJMFF016D03-          CCTTTAATTTTCTTGATTCGCTTCTGCAAGACCTGAGCGCATGCCTCACAATGCATTTGA
rJMSF052D01-          CCTTTAATTTTCTTGATTCGCTTCTGCAAGACCTGAGCGCATGCCTCACAATGCATTTGA
JMSF052D01+           CCTTTAATTTTCTTGATTCGCTTCTGCAAGACCTGAGCGCATGCCTCACAATGCATTTGA
JMFF016D03+                                             GAGCGCATGCCTCACAATGCATTTGA
                      ____________________________________________________________
consensus             CCTTTAATTTTCTTGATTCGCTTCTGCAAGACCTGAGCGCATGCCTCACAATGCATTTGA
 
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rJMFF016D03-          ACTTTCANAANCACTGTTGCGA                                      
rJMSF052D01-          ACTTTCAGAACCACTGTTGCGACTGGAGGAGGCTCATCTTTCTTCTCTTCTTTAGGGGGC
JMSF052D01+           ACTTTCAGAACCACTGTTGCGACTGGAGGAGGCTCATCTTTCTTCTCTTCTTTAGGGGGC
JMFF016D03+           ACTTTCAGAACCACTGTTGCGACTGGAGGAGGCTCATCTTTCTTCTCTTCTTTAGGGGGC
                      ____________________________________________________________
consensus             ACTTTCAGAACCACTGTTGCGACTGGAGGAGGCTCATCTTTCTTCTCTTCTTTAGGGGGC
 
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rJMSF052D01-          TCTTTGATTTCT                                                
JMSF052D01+           TCTTTGATTTC-TGCTTGGTTTCCTCAGCAGGGGGCTTGGGAATAGGCGAAATGAGGTCA
JMFF016D03+           TCTTTGATTTCTTGCTTGGTTTCCTCAGCAGGGGGCTTGGGAATAGGCGAAATGAGGTCA
                      ____________________________________________________________
consensus             TCTTTGATTTCTTGCTTGGTTTCCTCAGCAGGGGGCTTGGGAATAGGCGAAATGAGGTCA
 
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JMSF052D01+           ACCTTTCTGCCACTTTTCTTCTGAATCCTTTCACACACTTTCATAGGATCAACACTCTTA
JMFF016D03+           ACCTTCCTGCCACTTTTCTTCTGAATCCTTTCACACACTTTCATAGGATCAACACTCTTA
                      ____________________________________________________________
consensus             ACCTTTCTGCCACTTTTCTTCTGAATCCTTTCACACACTTTCATAGGATCAACACTCTTA
 
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JMSF052D01+           TTACCTTTCACCACAACTTTGCTTGCCTTATAATCCGCTGTTACTTCCTCCACTCCTTGG
JMFF016D03+           TTACCTTTCACCACAACTTTGCTTGCCTTATAATCCGCTGTTACTTCCTCCACTCCTTGG
                      ____________________________________________________________
consensus             TTACCTTTCACCACAACTTTGCTTGCCTTATAATCCGCTGTTACTTCCTCCACTCCTTGG
 
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JMSF052D01+           AATCCTTTCAAGGATCTTGTGACTTTTCTAGCACAAGCCTCACAGTGCATATCAACCTTG
JMFF016D03+           AATCCTTTCAAGGATCTTGTGACTTTTCTAGCACAAGCCTCACAGTGCATATCAACCTTG
                      ____________________________________________________________
consensus             AATCCTTTCAAGGATCTTGTGACTTTTCTAGCACAAGCCTCACAGTGCATATCAACCTTG
 
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JMSF052D01+           AGCACAATTTCAATCTTCTCTTCTTCCTCCTTTTTCTCTTCTTTCTTCTCTTCCTTGCTC
JMFF016D03+           AGCACAATTTCAATCTTCTCTTCTTCCTCCTTTTTCTCTTCTTTCTTCTCTTCCTTGCTC
                      ____________________________________________________________
consensus             AGCACAATTTCAATCTTCTCTTCTTCCTCCTTTTTCTCTTCTTTCTTCTCTTCCTTGCTC
 
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JMSF052D01+           ACTTCTTCTTTCTTCTCACCCTCCTTCTTCCCTTCCCCTTTGTTCTCCTCACCCATGTCT
JMFF016D03+           ACTTCTTCTTTCTTCTCACCCTCCTTCTTCCCTTCCCCTTTGTTCTCCTCACCCATGTCT
                      ____________________________________________________________
consensus             ACTTCTTCTTTCTTCTCACCCTCCTTCTTCCCTTCCCCTTTGTTCTCCTCACCCATGTCT
 
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JMSF052D01+           TGTAGACTTCTTTTTTATGAGTTTCTATATGGAAGAGTTCACTGTGTTCTGAAACT    
JMFF016D03+           TGTAGACTTCTTTTTTATGAGTTTCTATATGGAAGAGTTCACTGTGTTCTGAAACTGCAC
                      ____________________________________________________________
consensus             TGTAGACTTCTTTTTTATGAGTTTCTATATGGAAGAGTTCACTGTGTTCTGAAACTGCAC
 
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JMFF016D03+           AAGGAAATGAAAGGCCTTCTTTTAAACTCTCTCTCTCTCTTTCTCTCTCTCACACACACA
                      ____________________________________________________________
consensus             AAGGAAATGAAAGGCCTTCTTTTAAACTCTCTCTCTCTCTTTCTCTCTCTCACACACACA
 
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JMFF016D03+           CTCTGTAGTGTGTATTTCTAGTGGTGAAGAAGAGCATTTAAGTAGAGTGGGGAGGCTCAC
                      ____________________________________________________________
consensus             CTCTGTAGTGTGTATTTCTAGTGGTGAAGAAGAGCATTTAAGTAGAGTGGGGAGGCTCAC