Contig 011511:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF015L09Sequence658011511 (2)ref|XP_011087756.1|5e-121PREDICTED: lariat debranching enzyme [Sesamum indicum] ref|XP_011087765.1| PREDI740009668 (2)emb|CDP20997.1|3e-42unnamed protein product [Coffea canephora]
JMSF038F15Sequence679011511 (2)ref|XP_011087756.1|1e-129PREDICTED: lariat debranching enzyme [Sesamum indicum] ref|XP_011087765.1| PREDI885009668 (2)ref|XP_009786408.1|275PREDICTED: lariat debranching enzyme isoform X4 [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF038F15+ CTCGAAAAAAGGTTTTTGACGGAGAAGACTCTTCAAGT
                      ____________________________________________________________
consensus CTCGAAAAAAGGTTTTTGACGGAGAAGACTCTTCAAGT
 
. : . : . : . : . : . :
JMSF038F15+ TTCCGTGATCAGTAATGCCCACGGGCCAATCATGTGAAAGGAAGATATCAATTGGTTCTT
JMFF015L09+ CCGTGATCAGTAATGCCCACGGGCCAATCATGTGAAAGGAAGATATCAATTGGTTCTT
                      ____________________________________________________________
consensus TTCCGTGATCAGTAATGCCCACGGGCCAATCATGTGAAAGGAAGATATCAATTGGTTCTT
 
. : . : . : . : . : . :
JMSF038F15+ CAACTTGCATAAGCTTGTGAATATCATACTCACGAACATGATATATGGATCGTATATCTA
JMFF015L09+ CAACTTGCATAAGCTTGTGAATATCATACTCACGAACATGATATATGGATCGTATATCTA
                      ____________________________________________________________
consensus CAACTTGCATAAGCTTGTGAATATCATACTCACGAACATGATATATGGATCGTATATCTA
 
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JMSF038F15+ GCTCATTATAAGGAACCTTTTCATAATGTCCCGAATGATAGTGGTGTGATTTATATATTC
JMFF015L09+ GCTCATTATAAGGAACCTTTTCATAATGTCCCGAATGATAGTGGTGTGATTTATATATTC
                      ____________________________________________________________
consensus GCTCATTATAAGGAACCTTTTCATAATGTCCCGAATGATAGTGGTGTGATTTATATATTC
 
. : . : . : . : . : . :
JMSF038F15+ CAGAGAGGCCCCCAATACGAATGTTACCAAACTTGATTACTCCAGCAAATCCAAGGAAGT
JMFF015L09+ CAGAGAGGCCCCCAATACGAATGTTACCAAACTTGATTACTCCAGCAAATCCAAGGAAGT
                      ____________________________________________________________
consensus CAGAGAGGCCCCCAATACGAATGTTACCAAACTTGATTACTCCAGCAAATCCAAGGAAGT
 
. : . : . : . : . : . :
JMSF038F15+ ATATCTGAGGTGCTGCCCATCCTCCATAATATAGCTCCCACAGATAATTTGAGGCTTCAT
JMFF015L09+ ATATCTGAGGTGCTGCCCATCCTCCATAATATAGCTCCCACAGATAATTTGAGGCTTCAT
                      ____________________________________________________________
consensus ATATCTGAGGTGCTGCCCATCCTCCATAATATAGCTCCCACAGATAATTTGAGGCTTCAT
 
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JMSF038F15+ GATTGCCCCCTATGAAAATAGTTGGGAATGGTGCAACTTTTTCTCCTGAGTAATACTTCC
JMFF015L09+ GATTGCCCCCTATGAAAATAGTTGGGAATGGTGCAACTTTTTCTCCTGAGTAATACTTCC
                      ____________________________________________________________
consensus GATTGCCCCCTATGAAAATAGTTGGGAATGGTGCAACTTTTTCTCCTGAGTAATACTTCC
 
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JMSF038F15+ AGAAAGAGTTCATGCTCTTGTACTTGGGTGGCACATTTAAACTTTCAAGATCCTTCTCAT
JMFF015L09+ AGAAAGAGTTCATGCTCTTGTACTTGGGTGGCACATTTAAACTTTCAAGATCCTTCTCAT
                      ____________________________________________________________
consensus AGAAAGAGTTCATGCTCTTGTACTTGGGTGGCACATTTAAACTTTCAAGATCCTTCTCAT
 
. : . : . : . : . : . :
JMSF038F15+ TCCTAACAGCCTGAAAGTCACCACAGCATATCAAAAGATCAATCTTTATTTTCTCCACAT
JMFF015L09+ TCCTAACAGCCTGAAAGTCACCACAGCATATCAAAAGATCAATCTTTATTTTCTCCACAT
                      ____________________________________________________________
consensus TCCTAACAGCCTGAAAGTCACCACAGCATATCAAAAGATCAATCTTTATTTTCTCCACAT
 
. : . : . : . : . : . :
JMSF038F15+ CCTGTAAGTGTAATAAGGTAGCATACACATTGTCTAGGTCTCCATGCATACACCCTTCTA
JMFF015L09+ CCTGTAAGTGTAATAAGGTAGCATACACATTGTCTAGGTCTCCATGCATACACCCTTCTA
                      ____________________________________________________________
consensus CCTGTAAGTGTAATAAGGTAGCATACACATTGTCTAGGTCTCCATGCATACACCCTTCTA
 
. : . : . : . : . : . :
JMSF038F15+ CTGCTATCTTCATCTCTAAATATGACAGTTGTAGAACTTCTCTATGATCTCAAGGTAAGC
JMFF015L09+ CTGCTATCTTCATCTCTAAATATGACAGTTGTAGAACTTCTCTATGATCTCAAGGTAAGC
                      ____________________________________________________________
consensus CTGCTATCTTCATCTCTAAATATGACAGTTGTAGAACTTCTCTATGATCTCAAGGTAAGC
 
. : . : . : . : . : . :
JMSF038F15+ GGGGACGCTATCCACGGCAACTTAGAAGCTTGGAGGCAGT
JMFF015L09+ GGGGACGCTATCCACGGCAACTTAGAAGCTTGGAGGCAGTGGGGCTGTGAAGTTGTTCCT
                      ____________________________________________________________
consensus GGGGACGCTATCCACGGCAACTTAGAAGCTTGGAGGCAGTGGGGCTGTGAAGTTGTTCCT