Contig 011511:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF015L09Sequence658011511 (2)ref|XP_011087756.1|5e-121PREDICTED: lariat debranching enzyme [Sesamum indicum] ref|XP_011087765.1| PREDI740009668 (2)emb|CDP20997.1|3e-42unnamed protein product [Coffea canephora]
JMSF038F15Sequence679011511 (2)ref|XP_011087756.1|1e-129PREDICTED: lariat debranching enzyme [Sesamum indicum] ref|XP_011087765.1| PREDI885009668 (2)ref|XP_009786408.1|275PREDICTED: lariat debranching enzyme isoform X4 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF038F15+                                 CTCGAAAAAAGGTTTTTGACGGAGAAGACTCTTCAAGT
                      ____________________________________________________________
consensus                                   CTCGAAAAAAGGTTTTTGACGGAGAAGACTCTTCAAGT
 
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JMSF038F15+           TTCCGTGATCAGTAATGCCCACGGGCCAATCATGTGAAAGGAAGATATCAATTGGTTCTT
JMFF015L09+             CCGTGATCAGTAATGCCCACGGGCCAATCATGTGAAAGGAAGATATCAATTGGTTCTT
                      ____________________________________________________________
consensus             TTCCGTGATCAGTAATGCCCACGGGCCAATCATGTGAAAGGAAGATATCAATTGGTTCTT
 
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JMSF038F15+           CAACTTGCATAAGCTTGTGAATATCATACTCACGAACATGATATATGGATCGTATATCTA
JMFF015L09+           CAACTTGCATAAGCTTGTGAATATCATACTCACGAACATGATATATGGATCGTATATCTA
                      ____________________________________________________________
consensus             CAACTTGCATAAGCTTGTGAATATCATACTCACGAACATGATATATGGATCGTATATCTA
 
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JMSF038F15+           GCTCATTATAAGGAACCTTTTCATAATGTCCCGAATGATAGTGGTGTGATTTATATATTC
JMFF015L09+           GCTCATTATAAGGAACCTTTTCATAATGTCCCGAATGATAGTGGTGTGATTTATATATTC
                      ____________________________________________________________
consensus             GCTCATTATAAGGAACCTTTTCATAATGTCCCGAATGATAGTGGTGTGATTTATATATTC
 
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JMSF038F15+           CAGAGAGGCCCCCAATACGAATGTTACCAAACTTGATTACTCCAGCAAATCCAAGGAAGT
JMFF015L09+           CAGAGAGGCCCCCAATACGAATGTTACCAAACTTGATTACTCCAGCAAATCCAAGGAAGT
                      ____________________________________________________________
consensus             CAGAGAGGCCCCCAATACGAATGTTACCAAACTTGATTACTCCAGCAAATCCAAGGAAGT
 
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JMSF038F15+           ATATCTGAGGTGCTGCCCATCCTCCATAATATAGCTCCCACAGATAATTTGAGGCTTCAT
JMFF015L09+           ATATCTGAGGTGCTGCCCATCCTCCATAATATAGCTCCCACAGATAATTTGAGGCTTCAT
                      ____________________________________________________________
consensus             ATATCTGAGGTGCTGCCCATCCTCCATAATATAGCTCCCACAGATAATTTGAGGCTTCAT
 
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JMSF038F15+           GATTGCCCCCTATGAAAATAGTTGGGAATGGTGCAACTTTTTCTCCTGAGTAATACTTCC
JMFF015L09+           GATTGCCCCCTATGAAAATAGTTGGGAATGGTGCAACTTTTTCTCCTGAGTAATACTTCC
                      ____________________________________________________________
consensus             GATTGCCCCCTATGAAAATAGTTGGGAATGGTGCAACTTTTTCTCCTGAGTAATACTTCC
 
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JMSF038F15+           AGAAAGAGTTCATGCTCTTGTACTTGGGTGGCACATTTAAACTTTCAAGATCCTTCTCAT
JMFF015L09+           AGAAAGAGTTCATGCTCTTGTACTTGGGTGGCACATTTAAACTTTCAAGATCCTTCTCAT
                      ____________________________________________________________
consensus             AGAAAGAGTTCATGCTCTTGTACTTGGGTGGCACATTTAAACTTTCAAGATCCTTCTCAT
 
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JMSF038F15+           TCCTAACAGCCTGAAAGTCACCACAGCATATCAAAAGATCAATCTTTATTTTCTCCACAT
JMFF015L09+           TCCTAACAGCCTGAAAGTCACCACAGCATATCAAAAGATCAATCTTTATTTTCTCCACAT
                      ____________________________________________________________
consensus             TCCTAACAGCCTGAAAGTCACCACAGCATATCAAAAGATCAATCTTTATTTTCTCCACAT
 
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JMSF038F15+           CCTGTAAGTGTAATAAGGTAGCATACACATTGTCTAGGTCTCCATGCATACACCCTTCTA
JMFF015L09+           CCTGTAAGTGTAATAAGGTAGCATACACATTGTCTAGGTCTCCATGCATACACCCTTCTA
                      ____________________________________________________________
consensus             CCTGTAAGTGTAATAAGGTAGCATACACATTGTCTAGGTCTCCATGCATACACCCTTCTA
 
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JMSF038F15+           CTGCTATCTTCATCTCTAAATATGACAGTTGTAGAACTTCTCTATGATCTCAAGGTAAGC
JMFF015L09+           CTGCTATCTTCATCTCTAAATATGACAGTTGTAGAACTTCTCTATGATCTCAAGGTAAGC
                      ____________________________________________________________
consensus             CTGCTATCTTCATCTCTAAATATGACAGTTGTAGAACTTCTCTATGATCTCAAGGTAAGC
 
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JMSF038F15+           GGGGACGCTATCCACGGCAACTTAGAAGCTTGGAGGCAGT                    
JMFF015L09+           GGGGACGCTATCCACGGCAACTTAGAAGCTTGGAGGCAGTGGGGCTGTGAAGTTGTTCCT
                      ____________________________________________________________
consensus             GGGGACGCTATCCACGGCAACTTAGAAGCTTGGAGGCAGTGGGGCTGTGAAGTTGTTCCT