Contig 011510:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014B16Sequence558011510 (4)292008193 (4)
JMFF015J04Sequence548011510 (4)746008193 (4)ref|XP_009767895.1|2e-16PREDICTED: protein AIR1-like [Nicotiana sylvestris]
JMFF029F17Sequence564011510 (4)718008193 (4)ref|XP_009767895.1|8e-19PREDICTED: protein AIR1-like [Nicotiana sylvestris]
JMFF040H09Sequence491011510 (4)719008193 (4)ref|XP_009767895.1|4e-17PREDICTED: protein AIR1-like [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFF029F17+                                             TCTCAACAGGATCTGTTTCAGCAGTC
JMFF014B16+                                                   CAGGATCTGTTTCAGCAGTC
JMFF015J04+                                                   CAGGATCTGTTTCAGCAGTC
                      ____________________________________________________________
consensus                                               TCTCAACAGGATCTGTTTCAGCAGTC
 
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JMFF029F17+           TTATTAACAATTTCTATTGTGTTGCTAGTCTTTTCATTTTCATCTTCCTTCACTTTGTCC
JMFF014B16+           TTATTAACAATTTCTATTGTGTTGCTAGTCTTTTCATTTTCATCTTCCTTCACTTTGTCC
JMFF015J04+           TTATTAACAATTTCTATTGTGTTGCTAGTCTTTTCATTTTCATCTTCCTTCACTTTGTCC
                      ____________________________________________________________
consensus             TTATTAACAATTTCTATTGTGTTGCTAGTCTTTTCATTTTCATCTTCCTTCACTTTGTCC
 
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JMFF029F17+           TCCCCGATTATGTTGCTGCAGAAGTTTTCAGAACTCTTAAGCATTTCACCAGGCACATGT
JMFF014B16+           TCCCCGATTATGTTGCTGCAGAAGTTTTCAGAACTCTTAAGCATTTCACCAGGCACATGT
JMFF015J04+           TCCCCGATTATGTTGCTGCAGAAGTTTTCAGAACTCTTAAGCATTTCACCAGGC------
                      ____________________________________________________________
consensus             TCCCCGATTATGTTGCTGCAGAAGTTTTCAGAACTCTTAAGCATTTCACCAGGCACATGT
 
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JMFF029F17+           TTTATATTTACAGTTAACTCCTGTGCACTAGCGTTTTGGTCCTCCTCGTCCTCGTCCTTC
JMFF040H09+                    ACAGTTAACTCCTGTGCACTAGCGTTTTGGTCCTCCTCGTCCTCGTCCTTC
JMFF014B16+           TTTATATTTACAGTTAACTCCTGTGCACTAGCGTTTTGGTCCTCCTCGTCCTCGTCCTTC
JMFF015J04+           ---------ACAGTTAACTCCTGTGCACTAGCGTTTTGGTCCTCCTCGTCCTCGTCCTTC
                      ____________________________________________________________
consensus             TTTATATTTACAGTTAACTCCTGTGCACTAGCGTTTTGGTCCTCCTCGTCCTCGTCCTTC
 
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JMFF029F17+           TTCCTTTTCTTTTTCTTATCTTTCCTGCTCTTCTTACTCTCAACACTCATCGACTCCTTA
JMFF040H09+           TTCCTTTTCTTTTTCTTATCTTTCCTGCTCTTCTTACTCTCAACACTCATCGACTCCTTA
JMFF014B16+           TTCCTTTTCTTTTTCTTATCTTTCCTGCTCTTCTTACTCTCAACACTCATCGACTCCTTA
JMFF015J04+           TTCCTTTTCTTTTTCTTATCTTTCCTGCTCTTCTTACTCTCAACACTCATCGACTCCTTA
                      ____________________________________________________________
consensus             TTCCTTTTCTTTTTCTTATCTTTCCTGCTCTTCTTACTCTCAACACTCATCGACTCCTTA
 
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JMFF029F17+           AAAGCATCATCTATTTTCACGGAGTTTGCGCGTTGCATTGCTTTCTCCACGATTTTCAAG
JMFF040H09+           AAAGCATCATCTATTTTCACGGAGTTTGCGCGTTGCATTGCTTTCTCCACGATTTTCAAG
JMFF014B16+           AAAGCATCATCTATTTTCACGGAGTTTGCGCGTTGCATTGCTTTCTCCACGATTTTCAAG
JMFF015J04+           AAAGCATCATCTATTTTCACGGAGTTTGCGCGTTGCATTGCTTTCTCCACGATTTTCAAG
                      ____________________________________________________________
consensus             AAAGCATCATCTATTTTCACGGAGTTTGCGCGTTGCATTGCTTTCTCCACGATTTTCAAG
 
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JMFF029F17+           CTAAGGTCCTCGTTAGCCTCCGCATCTTCGTCGCTGCTAATTGCAGCAGCGGCATCGTAT
JMFF040H09+           CTAAGGTCCTCGTTAGCCTCCGCATCTTCGTCGCTGCTAATTGCAGCAGCGGCATCGTAT
JMFF014B16+           CTAAGGTCCTCGTTAGCCTCCGCATCTTCGTCGCTGCTAATTGCAGCAGCGGCATCGTAT
JMFF015J04+           CTAAGGTCCTCGTTAGCCTCCGCATCTTCGTCGCTGCTAATTGCAGCAGCGGCATCGTAT
                      ____________________________________________________________
consensus             CTAAGGTCCTCGTTAGCCTCCGCATCTTCGTCGCTGCTAATTGCAGCAGCGGCATCGTAT
 
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JMFF029F17+           TCCTTAGATTCATCTTCAATGAGTGGAGACGAAGAGCTCGATTTCAACTTCCTTTCTCTT
JMFF040H09+           TCCTTAGATTCATCTTCAATGAGTGGAGACGAAGAGCTCGATTTCAACTTCCTTTCTCTT
JMFF014B16+           TCCTTAGATTCATCTTCAATGAGTGGAGACGAAGAGCTCGATTTCAACTTCCTTTCTCTT
JMFF015J04+           TCCTTAGATTCATCTTCAATGAGTGGAGACGAAGAGCTCGATTTCAACTTCCTTTCTCTT
                      ____________________________________________________________
consensus             TCCTTAGATTCATCTTCAATGAGTGGAGACGAAGAGCTCGATTTCAACTTCCTTTCTCTT
 
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JMFF029F17+           CTTCCCATCTTAACTACTGATCAGTCGATAAAAAATAATTAAGCAGAAAAATCAAGAAAA
JMFF040H09+           CTTCCCATCTTAACTACTGATCAGTCGATAAAAAATAATTAAGCAGAAAAATCAAGAAAA
JMFF014B16+           CTTCCCATCTTAACTACTGATCAGTCGATAAAAAATAATTAAGCAGAAAAATCAAGAAAA
JMFF015J04+           CTTCCCATCTTAACTACTGATCAGTCGATAAAAAATAATTAAGCAGAAAAATCAAGAAAA
                      ____________________________________________________________
consensus             CTTCCCATCTTAACTACTGATCAGTCGATAAAAAATAATTAAGCAGAAAAATCAAGAAAA
 
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JMFF029F17+           ATTTGAGCGAGCGCTGAACTGCTGAAGAGTCGGAAGAAAACCCTAACCCTACACT     
JMFF040H09+           ATTTGAGCGAGCGCTGAACTGCTGAAGAGTCGGAAGAAAACCCTAACCCTACACT     
JMFF014B16+           ATTTGAGCGAGCGCTGAACTGCTGAAGAGTCGGAAGAAAACCCTAACCCTACACT     
JMFF015J04+           ATTTGAGCGAGCGCTGAACTGCTGAAGAGTCGGAAGAAAACCCTAACCCTACACTTCTAC
                      ____________________________________________________________
consensus             ATTTGAGCGAGCGCTGAACTGCTGAAGAGTCGGAAGAAAACCCTAACCCTACACTTCTAC