| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF014F15 | Sequence | 601 | 011505 (4) | ref|XP_009606232.1| | 2e-21 | PREDICTED: pre-mRNA-processing protein 40A isoform X3 [Nicotiana tomentosiformi | 751 | 002019 (3) | ref|XP_010323429.1| | 5e-07 | PREDICTED: pre-mRNA-processing protein 40A [Solanum lycopersicum] |
| JMFS104H02 | Sequence | 565 | 011505 (4) | ref|XP_009606232.1| | 5e-24 | PREDICTED: pre-mRNA-processing protein 40A isoform X3 [Nicotiana tomentosiformi | |||||
| JMFS139B05 | Sequence | 624 | 011505 (4) | ref|XP_009606232.1| | 2e-23 | PREDICTED: pre-mRNA-processing protein 40A isoform X3 [Nicotiana tomentosiformi | |||||
| JMFS152E05 | Sequence | 627 | 011505 (4) | ref|XP_009606232.1| | 6e-19 | PREDICTED: pre-mRNA-processing protein 40A isoform X3 [Nicotiana tomentosiformi | |||||
This contig is upended
. : . : . : . : . : . :
JMFS104H02+ ATTAGCAGCCGCAACTGC
____________________________________________________________
consensus ATTAGCAGCCGCAACTGC
. : . : . : . : . : . :
JMFS104H02+ AGGAGCAAAGGCTGAGGGTTGCTGACTGGTATGCTGCATAGGTGCACTCTGATTTGCAGG
JMFS139B05+ TGACTGGTATGCTGCATAGGTGCACTCTGATTTGCAGG
JMFS152E05+ TGACTGGTATGCTGCATAGGTGCACTCTGATTTGCAGG
JMFF014F15+ G
____________________________________________________________
consensus AGGAGCAAAGGCTGAGGGTTGCTGACTGGTATGCTGCATAGGTGCACTCTGATTTGCAGG
. : . : . : . : . : . :
JMFS104H02+ TGGCACCCAGGGTTGTCCTCCAGCTGTGAATGCTGGTGTACTTATCTGGGATGACATGTT
JMFS139B05+ TGGCACCCAGGGTTGTCCTCCAGCTGTGAATGCTGGTGTACTTATCTGGGATGACATGTT
JMFS152E05+ TGGCACCCAGGGTTGTCCTCCAGCTGTGAATGCTGGTGTACTTATCTGGGATGACATGTT
JMFF014F15+ TGGCACCCAGGGTTGTCCTACAGCTGTGAATGCTGGTGTACTTATCTGGGATGACATGTT
____________________________________________________________
consensus TGGCACCCAGGGTTGTCCTCCAGCTGTGAATGCTGGTGTACTTATCTGGGATGACATGTT
. : . : . : . : . : . :
JMFS104H02+ GATGCCACTGTTTGTCTGGCCAAAAGAAGATGCTGCAAAACCAGGCATGTGATTATTCCC
JMFS139B05+ GATGCCACTGTTTGTCTGGCCAAAAGAAGATGCTGCAAAACCAGGCATGTGATTATTCCC
JMFS152E05+ GATGCCACTGTTTGTCTGGCCAAAAGAAGATGCTGCAAA--CAGGCATGTGATTATTCCC
JMFF014F15+ GATGCCACTGTTTGTCTGGCCAAAAGAAGATGCTGCAAAACCAGGCATGTGATTATTCCC
____________________________________________________________
consensus GATGCCACTGTTTGTCTGGCCAAAAGAAGATGCTGCAAAACCAGGCATGTGATTATTCCC
. : . : . : . : . : . :
JMFS104H02+ AGAAGGAATCATTTGTTGAGGCTGCATTGACGCAGATGGAATAGGCATATTTGGTTGCAT
JMFS139B05+ AGAAGGAATCATTTGTTGAGGCTGCATTGACGCAGATGGAATAGGCATATTTGGTTGCAT
JMFS152E05+ AGAAGGAATCATTTGTTGAGGCTGCATTGACGCAGATGGAATAGGCATATTTGGTTGCAT
JMFF014F15+ AGAAGGAATCATTTGTTGAGGCTGCATTGACGCAGATGGAATAGGCATATTTGGTTGCAT
____________________________________________________________
consensus AGAAGGAATCATTTGTTGAGGCTGCATTGACGCAGATGGAATAGGCATATTTGGTTGCAT
. : . : . : . : . : . :
JMFS104H02+ CTGAATTGGCTGGGATGAAGGTATGTGACCAGGGCGTGGAGGAAAATGCTGCATTGGTTG
JMFS139B05+ CTGAATTGGCTGGGATGAAGGTATGTGACCAGGGCGTGGAGGAAAATGCTGCATTGGTTG
JMFS152E05+ CTGAATTGGCTGGGATGAAGGTATGTGACCAGGGCGTGGAGGAAAATGCTGCATTGGTTG
JMFF014F15+ CTGAATTGGCTGGGATGAAGGTATGTGACCAGGGCGTGGAGGAAAATGCTGCATTGGTTG
____________________________________________________________
consensus CTGAATTGGCTGGGATGAAGGTATGTGACCAGGGCGTGGAGGAAAATGCTGCATTGGTTG
. : . : . : . : . : . :
JMFS104H02+ AGAAAATTGCATTGCTTGACTTTGTCCAGGACCCATACCAATGTTTGGCATTTGTACAGG
JMFS139B05+ AGAAAATTGCATTGCTTGACTTTGTCCAGGACCCATACCAATGTTTGGCATTTGTACAGG
JMFS152E05+ AGAAAATTGCATTGCTTGACTTTGTCCAGGACCCATACCAATGTTTGGCATTTGTACAGG
JMFF014F15+ AGAAAATTGCATTGCTTGACTTTGTCCAGGACCCATACCAATGTTTGGCATTTGTACAGG
____________________________________________________________
consensus AGAAAATTGCATTGCTTGACTTTGTCCAGGACCCATACCAATGTTTGGCATTTGTACAGG
. : . : . : . : . : . :
JMFS104H02+ TGGAGCAAACGGCTGTCCTTGTTGTGCAGGTGCTCCAGGTTGAAATTGCATGGGAAACGA
JMFS139B05+ TGGAGCAAACGGCTGTCCTTGTTGTGCAGGTGCTCCAGGTTGAAATTGCATGGGAAACGA
JMFS152E05+ TGGAGCAAACGGCTGTCCTTGTTGTGCAGGTGCTCCAGGTTGAAATTGCATGGGAAACGA
JMFF014F15+ TGGAGCAAACGGCTGTCCTTGTTGTGCAGGTGCTCCAGGTTGAAATTGCATGGGAAACGA
____________________________________________________________
consensus TGGAGCAAACGGCTGTCCTTGTTGTGCAGGTGCTCCAGGTTGAAATTGCATGGGAAACGA
. : . : . : . : . : . :
JMFS104H02+ ACCATAACCATGGGGCGCCATGGGTCCACCTGGATGTGGCCGAAGAGGCTGTGCACCAGA
JMFS139B05+ ACCATAACCATGGGGCGCCATGGGTCCACCTGGATGTGGCCGAAGAGGCTGTGCACCAGA
JMFS152E05+ ACCATAACCATGGGGCGCCATGGGTCCACCTGGATGTGGCCGAAGAGGCTGTGCACCAGA
JMFF014F15+ ACCATAACCATGGGGCGCCATGGGTCCACCTGGATGTGGCCGAAGAGGCTGTGCACCAGA
____________________________________________________________
consensus ACCATAACCATGGGGCGCCATGGGTCCACCTGGATGTGGCCGAAGAGGCTGTGCACCAGA
. : . : . : . : . : . :
JMFS104H02+ TGGCGGTGGATTAGTTGCCATGCCAGCACATACACAATACTTCAACTTCCCAACAAGGCA
JMFS139B05+ TGGCGGTGGATTAGTTGCCATGCCAGCACATACACAATACTTCAACTTCCCAACAAGGCA
JMFS152E05+ TGGCGGTGGATTAGTTGCCATGCCAGCACATACACAATACTTCAACTTCCCAACAAGGCA
JMFF014F15+ TGGCGGTGGATTAGTTGCCATGCCAGCACATACACAATACTTCAACTTCCCAACAAGGCA
____________________________________________________________
consensus TGGCGGTGGATTAGTTGCCATGCCAGCACATACACAATACTTCAACTTCCCAACAAGGCA
. : . : . : . : . : . :
JMFS104H02+ GCCTGAA
JMFS139B05+ GCCTGAACTGAAGAAAGATCGCCCGCGAAGGTTTATACAGATTGGTTTCTAAAAGCGGTG
JMFS152E05+ GCCTGAACTGAAGAAAGATCGCCCGCGAAGGTTTATACAGATTGGTTTCTAAAAGCGGTG
JMFF014F15+ GCCTGAACTGAAGAAAGATCGCCCGCGAAGGTTTATACAGATTGGTTTCTAAAAGCGGTG
____________________________________________________________
consensus GCCTGAACTGAAGAAAGATCGCCCGCGAAGGTTTATACAGATTGGTTTCTAAAAGCGGTG
. : . : . : . : . : . :
JMFS139B05+ TTTTCTGGGAGCAGGGGAGTTTGATAGATTTCAGAACGTGTAATGT
JMFS152E05+ TTTTCTGGGAGCAGGGGAGTTTGATAGATTTCAGAACGTGTAATGT
JMFF014F15+ TTTTCTGGGAGCAGGGGAGTTTGATAGATTTCAGAACGTGTAATGTGAAGTGTAAACCAT
____________________________________________________________
consensus TTTTCTGGGAGCAGGGGAGTTTGATAGATTTCAGAACGTGTAATGTGAAGTGTAAACCAT