Contig 011503:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF013B18Sequence529011503 (2)emb|CDP01215.1|5e-15unnamed protein product [Coffea canephora]752011503 (2)emb|CDP01215.1|1e-14unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMFF013B18-                                                         ATTTTTTTCATCC
                      ____________________________________________________________
consensus                                                            ATTTTTTTCATCC
 
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rJMFF013B18-          ATTCTCAATAAAATTTGTTTACATGAGCTAAGCATACCAGCACTCCGACCAGCAGGCGTT
                      ____________________________________________________________
consensus             ATTCTCAATAAAATTTGTTTACATGAGCTAAGCATACCAGCACTCCGACCAGCAGGCGTT
 
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rJMFF013B18-          AGTTTGAGAATGGATGTTTTGGGGACCGGAGCATGAACTCCGACACCCACAAAAGCCTAA
                      ____________________________________________________________
consensus             AGTTTGAGAATGGATGTTTTGGGGACCGGAGCATGAACTCCGACACCCACAAAAGCCTAA
 
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rJMFF013B18-          CATACAAACTAATAAAAACATCAATATAATGCCATGCATGTGAGTTTGCACGTACGTACG
                      ____________________________________________________________
consensus             CATACAAACTAATAAAAACATCAATATAATGCCATGCATGTGAGTTTGCACGTACGTACG
 
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rJMFF013B18-          AGGTCCTCATATATATATATGAGTATGAAGTGCCACCCAGGCTAAACCCTAGGTGCTAAT
                      ____________________________________________________________
consensus             AGGTCCTCATATATATATATGAGTATGAAGTGCCACCCAGGCTAAACCCTAGGTGCTAAT
 
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rJMFF013B18-          GCACTAAAACATGTCGTACGTTATATACAAAACACACGATTACAAGCAAGCTCACATGCA
JMFF013B18+                      TGTCGTACGTTATATACAAAACACACGATTACAAGCAAGCTCACATGCA
                      ____________________________________________________________
consensus             GCACTAAAACATGTCGTACGTTATATACAAAACACACGATTACAAGCAAGCTCACATGCA
 
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rJMFF013B18-          TGCATCCCAGAGATCACAGATCACATTCACAAGATCAGGTTGAGGACGACGGTGAAAATC
JMFF013B18+           TGCATCCCAGAGATCACAGATCACATTCACAAGATCAGGTTGAGGACGACGGTGAAAATC
                      ____________________________________________________________
consensus             TGCATCCCAGAGATCACAGATCACATTCACAAGATCAGGTTGAGGACGACGGTGAAAATC
 
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rJMFF013B18-          ACACGTTGCGGTGGTGAAGGAACGGAGCGCAATTTCCCCAGTTCGCGGTGCCCAAAGACC
JMFF013B18+           ACACGTTGCGGTGGTGAAGGAACGGAGCGCAATTTCCCCAGTTCGCGGTGCCCAAAGACC
                      ____________________________________________________________
consensus             ACACGTTGCGGTGGTGAAGGAACGGAGCGCAATTTCCCCAGTTCGCGGTGCCCAAAGACC
 
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rJMFF013B18-          CTTCTTCGTCCTTTCCGTGATGACAACCCTTCATCCTTTTTAATTCCTCGTCGTTCTTCT
JMFF013B18+           CTTCTTCGTCCTTTCCGTGATGACAACCCTTCATCCTTTTTAATTCCTCGTCGTTCTTCT
                      ____________________________________________________________
consensus             CTTCTTCGTCCTTTCCGTGATGACAACCCTTCATCCTTTTTAATTCCTCGTCGTTCTTCT
 
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rJMFF013B18-          TCAGCAGATCCCACAAGATATGGACATCCTCGTACTCGCACGTCCTCACTTCTCGGTCTA
JMFF013B18+           TCAGCAGATCCCACAAGATATGGACATCCTCGTACTCGCACGTCCTCACTTCTCGGTCTA
                      ____________________________________________________________
consensus             TCAGCAGATCCCACAAGATATGGACATCCTCGTACTCGCACGTCCTCACTTCTCGGTCTA
 
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rJMFF013B18-          GCTTTCCCAACCCGGTTTTGCGAATGTGGAGACGCTTAGCAACTCTGGTCCAAACTTTCC
JMFF013B18+           GCTTTCCCAACCCGGTTTTGCGAATGTGGAGACGCTTAGCAACTCTGGTCCAAACTTTCC
                      ____________________________________________________________
consensus             GCTTTCCCAACCCGGTTTTGCGAATGTGGAGACGCTTAGCAACTCTGGTCCAAACTTTCC
 
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rJMFF013B18-          TCATCTTTCTCAACAACCCCATAGCTGCAAATAGTATCACGTACTATTATTATATTATAT
JMFF013B18+           TCATCTTTCTCAACAACCCCATAGCTGCAAATAGTATCACGTACTATTATTATATTATAT
                      ____________________________________________________________
consensus             TCATCTTTCTCAACAACCCCATAGCTGCAAATAGTATCACGTACTATTATTATATTATAT
 
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rJMFF013B18-          TATATTCTACGCCCCTCGCCTCTCCTATAACCTTTTCTGATAAATTCAGTTATGGAGTAA
JMFF013B18+           TATATTCTACGCCCCTCGCCTCTCCTATAACCTTTTCTGATAAATTCAGTTATGGAGTAA
                      ____________________________________________________________
consensus             TATATTCTACGCCCCTCGCCTCTCCTATAACCTTTTCTGATAAATTCAGTTATGGAGTAA
 
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rJMFF013B18-          TTGTATGTTTATGCGCATA                                         
JMFF013B18+           TTGTATGTTTATGCGCATAGCAGAGAGAAAGAGAGGAGGAAAAGGGGGAGAGCGAGAGAC
                      ____________________________________________________________
consensus             TTGTATGTTTATGCGCATAGCAGAGAGAAAGAGAGGAGGAAAAGGGGGAGAGCGAGAGAC