Contig 011493:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF010K16-                                                             CTGTAATCA
                      ____________________________________________________________
consensus                                                                CTGTAATCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF010K16-          TCCACATATATATGTACAAAATTATTAAAAGAACATTGGACACAAAAACGTAAGGCGGTG
                      ____________________________________________________________
consensus             TCCACATATATATGTACAAAATTATTAAAAGAACATTGGACACAAAAACGTAAGGCGGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF010K16-          GGTGACAAATCAAAAATCAAAAATCAAATCCGCCGTCAAAACCGTCGTCATATCCGGCAT
                      ____________________________________________________________
consensus             GGTGACAAATCAAAAATCAAAAATCAAATCCGCCGTCAAAACCGTCGTCATATCCGGCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF010K16-          CATAAGCGGCGGCGTCCGAAATCGCATCTCCGATCAGCATTCCTCCCAGCGCTCCACCTA
                      ____________________________________________________________
consensus             CATAAGCGGCGGCGTCCGAAATCGCATCTCCGATCAGCATTCCTCCCAGCGCTCCACCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF010K16-          GTAACCCGGCGCCCAATCCTAACCCAAATTTGTTCTTCTTTGGCGGTTGTACCGGTGGAT
                      ____________________________________________________________
consensus             GTAACCCGGCGCCCAATCCTAACCCAAATTTGTTCTTCTTTGGCGGTTGTACCGGTGGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF010K16-          ATCCGTATCCGGATTGCGATGGATATCCGTATCCGGGTTGCGGTGGATATCCGTATGCAG
                      ____________________________________________________________
consensus             ATCCGTATCCGGATTGCGATGGATATCCGTATCCGGGTTGCGGTGGATATCCGTATGCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF010K16-          GAGGCGGAGGATGTGGATATCCACTACCATACGCCGCCGCAGCCGGCGGAGGCGGATATC
                      ____________________________________________________________
consensus             GAGGCGGAGGATGTGGATATCCACTACCATACGCCGCCGCAGCCGGCGGAGGCGGATATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF010K16-          CGTATCCGGCTGGAGGATACCCTACCGGCGGCGGATAGGCTGCTCCGCTAGCTGCCGGTC
                      ____________________________________________________________
consensus             CGTATCCGGCTGGAGGATACCCTACCGGCGGCGGATAGGCTGCTCCGCTAGCTGCCGGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF010K16-          CATTGCGCGGTGGTGGTGTAGGACCTGGAGAATATACAGAGCTGCTTGAGCCCGGATAAG
JMFN009F16+                                                   GCTGCTTGAGCCCGGATAAG
                      ____________________________________________________________
consensus             CATTGCGCGGTGGTGGTGTAGGACCTGGAGAATATACAGAGCTGCTTGAGCCCGGATAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF010K16-          CCGGCGTAAAAGCCGGATAGGCCGTTACGGGTTCATCCACTTTATTCGCAGCCACCGCCG
JMFN009F16+           CCGGCGTAAAAGCCGGATAGGCCGTTACGGGTTCATCCACTTTATTCGCAGCCACCGCCG
                      ____________________________________________________________
consensus             CCGGCGTAAAAGCCGGATAGGCCGTTACGGGTTCATCCACTTTATTCGCAGCCACCGCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF010K16-          CAATAGGCGGCGGGCCGTTAGTTTTCTCTCCGAACTGATAACAAAACGTCAGCTGACCTT
JMFN009F16+           CAATAGGCGGCGGGCCGTTAGTTTTCTCTCCGAACTGATAACAAAACGTCAGCTGACCTT
JMFF010K16+                GGCGGCGGGCCGTTAGTTTTCTCTCCGAACTGATAACAAAACGTCAGCTGACCTT
                      ____________________________________________________________
consensus             CAATAGGCGGCGGGCCGTTAGTTTTCTCTCCGAACTGATAACAAAACGTCAGCTGACCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF010K16-          TCGGCTTTCCGGACGGCTTCTTCACCTGATAGTTCACGAACTGCTTCGTAGCCGATGCAG
JMFN009F16+           TCGGCTTTCCGGACGGCTTCTTCACCTGATAGTTCACGAACTGCTTCGTAGCCGATGCAG
JMFF010K16+           TCGGCTTTCCGGACGGCTTCTTCACCTGATAGTTCACGAACTGCTTCGTAGCCGATGCAG
                      ____________________________________________________________
consensus             TCGGCTTTCCGGACGGCTTCTTCACCTGATAGTTCACGAACTGCTTCGTAGCCGATGCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF010K16-          CCGGAGAGTCGAGAAGCTCCTTAACAGGGACGATAACTTCACCGACGTCCCTATCCCCGA
JMFN009F16+           CCGGAGAGTCGAGAAGCTCCTTAACAGGGACGATAACTTCACCGACGTCCCTATCCCCGA
JMFF010K16+           CCGGAGAGTCGAGAAGCTCCTTAACAGGGACGATAACTTCACCGACGTCCCTATCCCCGA
                      ____________________________________________________________
consensus             CCGGAGAGTCGAGAAGCTCCTTAACAGGGACGATAACTTCACCGACGTCCCTATCCCCGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF010K16-          GAACGCGCTGGCAACGGAGCTTGAAAACGAGCATGANACGGCCCTGACGANCGGCGGCCT
JMFN009F16+           GAACGCGCTGGCAACGGAGCTTGAAAACGAGCATGAGACGGCCCTGACGAGCGGCGGCCT
JMFF010K16+           GAACGCGCTGGCAACGGAGCTTGAAAACGAGCATGAGACGGCCCTGACGAGCGGCGGCCT
                      ____________________________________________________________
consensus             GAACGCGCTGGCAACGGAGCTTGAAAACGAGCATGAGACGGCCCTGACGAGCGGCGGCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF010K16-          CATCGACGGTGA                                                
JMFN009F16+           CATCGACGGTGAACTTTACGGGGAAATTCCAGGCGGGGTTGGCCCCACCGTCGCGATCCA
JMFF010K16+           CATCGACGGTGAACTTTACGGGGAAATTCCAGGCGGGGTTGGCCCCACCGTCGCGATCCA
                      ____________________________________________________________
consensus             CATCGACGGTGAACTTTACGGGGAAATTCCAGGCGGGGTTGGCCCCACCGTCGCGATCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN009F16+           CGGGAGTTTTGGACACCTGCTTGGATTTATCGTTGCCGCCGGAGATAGAAACGACGACGT
JMFF010K16+           CGGGAGTTTTGGACACCTGCTTGGATTTATCGTTGCCGCCGGAGATAGAAACGACGACGT
                      ____________________________________________________________
consensus             CGGGAGTTTTGGACACCTGCTTGGATTTATCGTTGCCGCCGGAGATAGAAACGACGACGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN009F16+           AAACATTCATCCTGGAGAAAACAGTGACCTTATTGAGATCTTTGGCCGACATAATCTTGA
JMFF010K16+           AAACATTCATCCTGGAGAAAACAGTGACCTTATTGAGATCTTTGGCCGACATAATCTTGA
                      ____________________________________________________________
consensus             AAACATTCATCCTGGAGAAAACAGTGACCTTATTGAGATCTTTGGCCGACATAATCTTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN009F16+           TTTCCAAAGTACGAAACTCCATGGTTAAGCGATGGATGTTGGGGAAAGTAGCTAGCTTGT
JMFF010K16+           TTTCCAAAGTACGAAACTCCATGGTTAAGCGATGGATGTTGGGGAAAGTAGCTAGCTTGT
                      ____________________________________________________________
consensus             TTTCCAAAGTACGAAACTCCATGGTTAAGCGATGGATGTTGGGGAAAGTAGCTAGCTTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN009F16+           TAGGGATTTATGTAGAGAGAAGCTAGAAGTGTGTGTAC                      
JMFF010K16+           TAGGGATTTATGTAGAGAGAAGCTAGAAGTGTGTGTACGCGAAGGTTTGAGAATGTATAT
                      ____________________________________________________________
consensus             TAGGGATTTATGTAGAGAGAAGCTAGAAGTGTGTGTACGCGAAGGTTTGAGAATGTATAT