| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF010A15 | Sequence | 542 | 011490 (8) | ref|XP_011020836.1| | 181 | PREDICTED: uncharacterized protein LOC105123069 [Populus euphratica] | 715 | 014814 | ref|XP_010909329.1| | 118 | PREDICTED: uncharacterized protein LOC105035461 [Elaeis guineensis] |
| JMFF031M13 | Sequence | 567 | 011490 (8) | ref|XP_009598757.1| | 225 | PREDICTED: uncharacterized protein LOC104094511 [Nicotiana tomentosiformis] | 591 | 011490 (8) | ref|XP_002512639.1| | 4e-71 | conserved hypothetical protein [Ricinus communis] gb|EEF50091.1| conserved hypot |
| JMSF023L15 | Sequence | 680 | 011490 (8) | ref|XP_002512639.1| | 4e-70 | conserved hypothetical protein [Ricinus communis] gb|EEF50091.1| conserved hypot | |||||
| JMSF028L05 | Sequence | 669 | 011490 (8) | ref|XP_002512639.1| | 4e-71 | conserved hypothetical protein [Ricinus communis] gb|EEF50091.1| conserved hypot | 625 | 011490 (8) | ref|XP_002512639.1| | 5e-71 | conserved hypothetical protein [Ricinus communis] gb|EEF50091.1| conserved hypot |
| JMSF041O08 | Sequence | 766 | 011490 (8) | ref|XP_002512639.1| | 1e-70 | conserved hypothetical protein [Ricinus communis] gb|EEF50091.1| conserved hypot | 730 | 011490 (8) | ref|XP_002512639.1| | 8e-71 | conserved hypothetical protein [Ricinus communis] gb|EEF50091.1| conserved hypot |
This contig is upended
. : . : . : . : . : . :
JMSF041O08+ AACAATCCAAATTATT
____________________________________________________________
consensus AACAATCCAAATTATT
. : . : . : . : . : . :
JMSF041O08+ ATTCTCTATATATAAATAGTAATAGCATTTTACATTTACAT-GTAAGAACTTGAACACAA
JMSF023L15+ ACTTGAACACAA
rJMSF041O08- ATAGCATTTTACATTTACATGGTAAGAACTTGAACACAA
____________________________________________________________
consensus ATTCTCTATATATAAATAGTAATAGCATTTTACATTTACATGGTAAGAACTTGAACACAA
. : . : . : . : . : . :
JMSF041O08+ CAAGCACTTTATGTATCACTCACTGAGCAAATAACGCACTTCAATATAACTCGGGATTGA
JMSF023L15+ CAAGCACTTTATGTATCACTCACTGAGCAAATAACGCACTTCAATATAACTCGGGATTGA
rJMSF041O08- CAAGCACTTTATGTATCACTCACTGAGCAAATAACGCACTTCAATATAACTCGGGATTGA
rJMFF031M13- ATATAACTCGGGATTGA
JMSF028L05+ TGAGCAAATAACGCACTTCAATATAACTCGGGATTGA
____________________________________________________________
consensus CAAGCACTTTATGTATCACTCACTGAGCAAATAACGCACTTCAATATAACTCGGGATTGA
. : . : . : . : . : . :
JMSF041O08+ TTCTGTACCATATTTAACAAAAACTTATGTAAAGAACACAGCTGGAGAGTATATCAGTTC
JMSF023L15+ TTCTGTACCATATTTAACAAAAACTTATGTAAAGAACACAGCTGGAGAGTATATCAGTTC
rJMSF041O08- TTCTGTACCATATTTAACAAAAACTTATGTAAAGAACACAGCTGGAGAGTATATCAGTTC
rJMSF028L05- CCATATTTAACAAAAACTTATGTAAAGAACACAGCTGGAGAGTATATCAGTTC
rJMFF031M13- TTCTGTACCATATTTAACAAAAACTTATGTAAAGAACACAGCTGGAGAGTATATCAGTTC
JMSF028L05+ TTCTGTACCATATTTAACAAAAACTTATGTAAAGAACACAGCTGGAGAGTATATCAGTTC
____________________________________________________________
consensus TTCTGTACCATATTTAACAAAAACTTATGTAAAGAACACAGCTGGAGAGTATATCAGTTC
. : . : . : . : . : . :
JMSF041O08+ ATCAACCAGAAAAGAATACTTGATACTACTATGTATGGAGTGGCAATTCAATACAATGGA
JMSF023L15+ ATCAACCAGAAAAGAATACTTGATACTACTATGTATGGAGTGGCAATTCAATACAATGGA
rJMSF041O08- ATCAACCAGAAAAGAATACTTGATACTACTATGTATGGAGTGGCAATTCAATACAATGGA
rJMSF028L05- ATCAACCAGAAAAGAATACTTGATACTACTATGTATGGAGTGGCAATTCAATACAATGGA
rJMFF031M13- ATCAACCAGAAAAGAATACTTGATACTACTATGTATGGAGTGGCAATTCAATACAATGGA
JMFF031M13+ TCAACCAGAAAAGAATACTTGATACTACTATGTATGGAGTGGCAATTCAATACAATGGA
JMSF028L05+ ATCAACCAGAAAAGAATACTTGATACTACTATGTATGGAGTGGCAATTCAATACAATGGA
____________________________________________________________
consensus ATCAACCAGAAAAGAATACTTGATACTACTATGTATGGAGTGGCAATTCAATACAATGGA
. : . : . : . : . : . :
JMSF041O08+ ATACGGGCAGCAATTGCTTATCGATCAGGCAGGTAGTGCAAAACTTAGTTCTTTCCACTG
JMSF023L15+ ATACGGGCAGCAATTGCTTATCGATCAGGCAGGTAGTGCAAAACTTAGTTCTTTCCACTG
rJMSF041O08- ATACGGGCAGCAATTGCTTATCGATCAGGCAGGTAGTGCAAAACTTAGTTCTTTCCACTG
rJMSF028L05- ATACGGGCAGCAATTGCTTATCGATCAGGCAGGTAGTGCAAAACTTAGTTCTTTCCACTG
rJMFF031M13- ATACGGGCAGCAATTGCTTATCGATCAGGCAGGTAGTGCAAAACTTAGTTCTTTCCACTG
JMFF031M13+ ATACGGGCAGCAATTGCTTATCGATCAGGCAGGTAGTGCAAAACTTAGTTCTTTCCACTG
JMSF028L05+ ATACGGGCAGCAATTGCTTATCGATCAGGCAGGTAGTGCAAAACTTAGTTCTTTCCACTG
____________________________________________________________
consensus ATACGGGCAGCAATTGCTTATCGATCAGGCAGGTAGTGCAAAACTTAGTTCTTTCCACTG
. : . : . : . : . : . :
JMSF041O08+ CGGAGGGTCCACCACTATACAAGGATCAGACTTCTCAAAGTCGGCAACTTTCTCATTGCA
JMSF023L15+ CGGAGGGTCCACCACTATACAAGGATCAGACTTCTCAAAGTCGGCAACTTTCTCATTGCA
rJMSF041O08- CGGAGGGTCCACCACTATACAAGGATCAGACTTCTCAAAGTCGGCAACTTTCTCATTGCA
rJMSF028L05- CGGAGGGTCCACCACTATACAAGGATCAGACTTCTCAAAGTCGGCAACTTTCTCATTGCA
rJMFF031M13- CGGAGGGTCCACCACTATACAAGGATCAGACTTCTCAAAGTCGGCAACTTTCTCATTGCA
JMFF031M13+ CGGAGGGTCCACCACTATACAAGGATCAGACTTCTCAAAGTCGGCAACTTTCTCATTGCA
JMSF028L05+ CGGAGGGTCCACCACTATACAAGGATCAGACTTCTCAAAGTCGGCAACTTTCTCATTGCA
JMFF010A15+ ACTTTCTCATTGCA
____________________________________________________________
consensus CGGAGGGTCCACCACTATACAAGGATCAGACTTCTCAAAGTCGGCAACTTTCTCATTGCA
. : . : . : . : . : . :
JMSF041O08+ GCTTGGACAGTAGTGATATTTATGCCAAAGGCAATCCATTGAGGGGCAGAGAAAGCAAAC
JMSF023L15+ GCTTGGACAGTAGTGATATTTATGCCAAAGGCAATCCATTGAGGGGCAGAGAAAGCAAAC
rJMSF041O08- GCTTGGACAGTAGTGATATTTATGCCAAAGGCAATCCATTGAGGGGCAGAGAAAGCAAAC
rJMSF028L05- GCTTGGACAGTAGTGATATTTATGCCAAAGGCAATCCATTGAGGGGCAGAGAAAGCAAAC
rJMFF031M13- GCTTGGACAGTAGTGATATTTATGCCAAAGGCAATCCATTGAGGGGCAGAGAAAGCAAAC
JMFF031M13+ GCTTGGACAGTAGTGATATTTATGCCAAAGGCAATCCATTGAGGGGCAGAGAAAGCAAAC
JMSF028L05+ GCTTGGACAGTAGTGATATTTATGCCAAAGGCAATCCATTGAGGGGCAGAGAAAGCAAAC
JMFF010A15+ GCTTGGACAGTAGTGATATTTATGCCAAAGGCAATCCATTGAGGGGCAGAGAAAGCAAAC
____________________________________________________________
consensus GCTTGGACAGTAGTGATATTTATGCCAAAGGCAATCCATTGAGGGGCAGAGAAAGCAAAC
. : . : . : . : . : . :
JMSF041O08+ CCCAAGCATCATTGGCATCATACACCCAACACAAGCTGCCAAACTTGGTTTCGACTTGAC
JMSF023L15+ CCCAAGCATCATTGGCATCATACACCCAACACAAGCTGCCAAACTTGGTTTCGACTTGAC
rJMSF041O08- CCCAAGCATCATTGGCATCATACACCCAACACAAGCTGCCAAACTTGGTTTCGACTTGAC
rJMSF028L05- CCCAAGCATCATTGGCATCATACACCCAACACAAGCTGCCAAACTTGGTTTCGACTTGAC
rJMFF031M13- CCCAAGCATCATTGGCATCATACACCCAACACAAGCTGCCAAACTTGGTTTCGACTTGAC
JMFF031M13+ CCCAAGCATCATTGGCATCATACACCCAACACAAGCTGCCAAACTTGGTTTCGACTTGAC
JMSF028L05+ CCCAAGCATCATTGGCATCATACACCCAACACAAGCTGCCAAACTTGGTTTCGACTTGAC
JMFF010A15+ CCCAAGCATCATTGGCATCATACACCCAACACAAGCTGCCAAACTTGGTTTCGACTTGAC
____________________________________________________________
consensus CCCAAGCATCATTGGCATCATACACCCAACACAAGCTGCCAAACTTGGTTTCGACTTGAC
. : . : . : . : . : . :
JMSF041O08+ AAGGGTAAGTCCAGAATTGCCACAGTGGATGCAGTTGAAGGGTGCCGGAGTGTCGCGGTA
JMSF023L15+ AAGGGTAAGTCCAGAATTGCCACAGTGGATGCAGTTGAAGGGTGCCGGAGTGTCGCGGTA
rJMSF041O08- AAGGGTAAGTCCAGAATTGCCACAGTGGATGCAGTTGAAGGGTGCCGGAGTGTCGCGGTA
rJMSF028L05- AAGGGTAAGTCCAGAATTGCCACAGTGGATGCAGTTGAAGGGTGCCGGAGTGTCGCGGTA
rJMFF031M13- AAGGGTAAGTCCAGAATTGCCACAGTGGATGCAGTTGAAGGGTGCCGGAGTGTCGCGGTA
JMFF031M13+ AAGGGTAAGTCCAGAATTGCCACAGTGGATGCAGTTGAAGGGTGCCGGAGTGTCGCGGTA
JMSF028L05+ AAGGGTAAGTCCAGAATTGCCACAGTGGATGCAGTTGAAGGGTGCCGGAGTGTCGCGGTA
JMFF010A15+ AAGGGTAAGTCCAGAATTGCCACAGTGGATGCAGTTGAAGGGTGCCGGAGTGTCGCGGTA
____________________________________________________________
consensus AAGGGTAAGTCCAGAATTGCCACAGTGGATGCAGTTGAAGGGTGCCGGAGTGTCGCGGTA
. : . : . : . : . : . :
JMSF041O08+ CATAGTCTGCTGAATCGGAATTCCTTTGGGGTCTCCGACGATGGCGTTCGGAGGGATGAC
JMSF023L15+ CATAGTCTGCTGAATCGGAATTCCTTTGGGGTCTCCGACGATGGCGTTCGGAGGGATGAC
rJMSF041O08- CATAGTCTGCTGAATCGGAATTCCTTTGGGGTCTCCGACGATGGCGTTCGGAGGGATGAC
rJMSF028L05- CATAGTCTGCTGAATCGGAATTCCTTTGGGGTCTCCGACGATGGCGTTCGGAGGGATGAC
rJMFF031M13- CATAGTCTGCTGAATCGGAATTCCTTTGGGGTCTCCGACGATGGCGTTCGGAGGGATGAC
JMFF031M13+ CATAGTCTGCTGAATCGGAATTCCTTTGGGGTCTCCGACGATGGCGTTCGGAGGGATGAC
JMSF028L05+ CATAGTCTGCTGAATCGGAATTCCTTTGGGGTCTCCGACGATGGCGTTCGGAGGGATGAC
JMFF010A15+ CATAGTCTGCTGAATCGGAATTCCTTTGGGGTCTCCGACGATGGCGTTCGGAGGGATGAC
____________________________________________________________
consensus CATAGTCTGCTGAATCGGAATTCCTTTGGGGTCTCCGACGATGGCGTTCGGAGGGATGAC
. : . : . : . : . : . :
JMSF041O08+ GCCAGCTTGGTAAGGGTTTTCTTGAACAAAGTACTGCGGATGCTGCGGT-GGCGGCGCCG
JMSF023L15+ GCCAGCTTGGTAAGGGTTTTCTTGAACAAAGTACTGCGGATGCTGCGGT-GGCGGCGCCG
rJMSF041O08- GCCAGCTTGGTAAGGGTTTTCTTGAACAAAGTACTGCGGATGCTGCGGT-GGCGGCGCCG
rJMSF028L05- GCCAGCTTGGTAAGGGTTTTCTTGAACAAAGTACTGCGGATGCTGCGGTGGCCGGCGCCG
rJMFF031M13- GCCAGCTTGGTAAGGGTTTTCTTGAACAAAGTACTGCGGATGCTGCGGTGGGCGGCGCCG
JMFF031M13+ GCCAGCTTGGTAAGGGTTTTCTTGAACAAAGTACTGCGGATGCTGCGGT-GGCGGCGCCG
JMSF028L05+ GCCAGCTTGGTAAGGGTTTTCTTGAACAAAGTACTGCGGATGCTGCGGT-GGCGGCGCCG
JMFF010A15+ GCCAGCTTGGTAAGGGTTTTCTTGAACAAAGTACTGCGGATGCTGCGGT-GGCGGCGCCG
____________________________________________________________
consensus GCCAGCTTGGTAAGGGTTTTCTTGAACAAAGTACTGCGGATGCTGCGGT-GGCGGCGCCG
. : . : . : . : . : . :
JMSF041O08+ GCGCCGGCGCCGGCGCCTGATAGGCC-GGATTATAGGGGATTCCGATAGCTGGTTCCTCG
JMSF023L15+ GCGCCGGCGCCGGCGCCTGATAGGCC-GGATTATAGGGGATTCCGATAGCTGGTTCCTCG
rJMSF041O08- GCGCCGGCGCCGGCGCCTGATAGGCC-GGATTATAGGGGATTCCGATAGCTGGTTCCTCG
rJMSF028L05- GCGCCGGCGCCGGCGCCTGATAGGCC-GGATTATAGGGGATTCCGATAGCTGGTTCCTCG
rJMFF031M13- GCGCCGGCGCCGGCGCCTGATAGGCC-GGATTATA
JMFF031M13+ GCGCCGGCGCCGGCGCCTGATAGGCC-GGATTATAGGGGATTCCGATAGCTGGTTCCTCG
JMSF028L05+ GCGCCGGCGCCGGCGCCTGATAGGCC-GGATTATAGGGGATTCCGATAGCTGGTTCCTCG
JMFF010A15+ GCGCCGGCGCCGGCGCCTGATAGGCCGGGATTATAGGGGATTCCGATAGCTGGTTCCTCG
____________________________________________________________
consensus GCGCCGGCGCCGGCGCCTGATAGGCC-GGATTATAGGGGATTCCGATAGCTGGTTCCTCG
. : . : . : . : . : . :
JMSF041O08+ GTCTTCGACATTGCATACGATTCAATTCTCAGC
JMSF023L15+ GTCTTCGAC
rJMSF041O08- GTCTTCGACATTGCATACGATTCAATTCTCAGC
rJMSF028L05- GTCTTCGACATTGCATACGATTCAATTCTCAGC
JMFF031M13+ GTCTTCGACATTGCATACGATTCAATTCTC
JMSF028L05+ GTCTTCGACATTGCATACGATTCAATTCTCAGC
JMFF010A15+ GTCTTCGACATTGCATACGATTCAATTCTCAGGAAGATCTCTCTCGCTGGCGCGTACTAT
____________________________________________________________
consensus GTCTTCGACATTGCATACGATTCAATTCTCAGCAAGATCTCTCTCGCTGGCGCGTACTAT