| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF006F21 | Sequence | 590 | 011475 (10) | gb|KJB19928.1| | 5e-55 | hypothetical protein B456_003G125200 [Gossypium raimondii] | 553 | 011475 (10) | ref|XP_010033042.1| | 3e-44 | PREDICTED: uncharacterized protein LOC104422417 isoform X1 [Eucalyptus grandis] |
| JMFF031E12 | Sequence | 574 | 011475 (10) | emb|CDP09141.1| | 9e-69 | unnamed protein product [Coffea canephora] | 699 | 011475 (10) | emb|CDP09141.1| | 4e-68 | unnamed protein product [Coffea canephora] |
| JMFF037E18 | Sequence | 576 | 011475 (10) | emb|CDP09141.1| | 1e-68 | unnamed protein product [Coffea canephora] | 716 | 011475 (10) | emb|CDP09141.1| | 5e-68 | unnamed protein product [Coffea canephora] |
| JMFN007G08 | Sequence | 618 | 011475 (10) | emb|CDP09141.1| | 2e-68 | unnamed protein product [Coffea canephora] | |||||
| JMFN037J15 | Sequence | 643 | 011475 (10) | emb|CDP09141.1| | 2e-68 | unnamed protein product [Coffea canephora] | |||||
| JMSF046D19 | Sequence | 733 | 011475 (10) | emb|CDP09141.1| | 6e-68 | unnamed protein product [Coffea canephora] | 736 | 011475 (10) | emb|CDP09141.1| | 7e-68 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMFF006F21- CGGAGAATAATTTA
____________________________________________________________
consensus CGGAGAATAATTTA
. : . : . : . : . : . :
rJMFF006F21- AATATAAGTTGGAGGAACATGAATACATAGATTGTGAAATACTACCAATACAATATTTAG
rJMSF046D19- ACATGAATACATAGATTGTGAAATACTACCAATACAATATTTAG
rJMFF037E18- TAGATTGTGAAATACTACCAATACAATATTTAG
JMSF046D19+ ACATGAATACATAGATTGTGAAATACTACCAATACAATATTTAG
____________________________________________________________
consensus AATATAAGTTGGAGGAACATGAATACATAGATTGTGAAATACTACCAATACAATATTTAG
. : . : . : . : . : . :
rJMFF006F21- AAATCACAGGAATTATTCTAAATGTAATTATTGTCATAGCAATACATTGAAGTTCATCGG
rJMSF046D19- AAATCACAGGAATTATTCTAAATGTAATTATTGTCATAGCAATACATTGAAGTTCATCGG
rJMFF037E18- AAATCACAGGAATTATTCTAAATGTAATTATTGTCATAGCAATACATTGAAGTTCATCGG
JMSF046D19+ AAATCACAGGAATTATTCTAAATGTAATTATTGTCATAGCAATACATTGAAGTTCATCGG
JMFN037J15+ CATTGAAGTTCATCGG
JMFN007G08+ TAAATGTAATTATTGTCATAGCAATACATTGAAGTTCATCGG
rJMFF031E12- GGAATTATTCTAAATGTAATTATTGTCATAGCAATACATTGAAGTTCATCGG
____________________________________________________________
consensus AAATCACAGGAATTATTCTAAATGTAATTATTGTCATAGCAATACATTGAAGTTCATCGG
. : . : . : . : . : . :
rJMFF006F21- AAAATGCAGAATTGTAACATTAGACGTCTCACACTAAACGTCTCACTCTTCTTTCAATTG
rJMSF046D19- AAAATGCAGAATTGTAACATTAGACGTCTCACACTAAACGTCTCACTCTTCTTTCAATTG
rJMFF037E18- AAAATGCAGAATTGTAACATTAGACGTCTCACACTAAACGTCTCACTCTTCTTTCAATTG
JMFF031E12+ TTCTTTCAATTG
JMFF037E18+ CTTCTTTCAATTG
JMSF046D19+ AAAATGCAGAATTGTAACATTAGACGTCTCACACTAAACGTCTCACTCTTCTTTCAATTG
JMFN037J15+ AAAATGCAGAATTGTAACATTAGACGTCTCACACTAAACGTCTCACTCTTCTTTCAATTG
JMFN007G08+ AAAATGCAGAATTGTAACATTAGACGTCTCACACTAAACGTCTCACTCTTCTTTCAATTG
rJMFF031E12- AAAATGCAGAATTGTAACATTAGACGTCTCACACTAAACGTCTCACTCTTCTTTCAATTG
____________________________________________________________
consensus AAAATGCAGAATTGTAACATTAGACGTCTCACACTAAACGTCTCACTCTTCTTTCAATTG
. : . : . : . : . : . :
rJMFF006F21- TCACTTCTACTTGGTTTGTCTGAGATAAAGTTGATTGCATCGGCGGGAGCCGGAATCCAT
rJMSF046D19- TCACTTCTACTTGGTTTGTCTGAGATAAAGTTGATTGCATCGGCGGGAGCCGGAATCCAT
rJMFF037E18- TCACTTCTACTTGGTTTGTCTGAGATAAAGTTGATTGCATCGGCGGGAGCCGGAATCCAT
JMFF031E12+ TCACTTCTACTTGGTTTGTCTGAGATAAAGTTGATTGCATCGGCGGGAGCCGGAATCCAT
JMFF037E18+ TCACTTCTACTTGGTTTGTCTGAGATAAAGTTGATTGCATCGGCGGGAGCCGGAATCCAT
JMSF046D19+ TCACTTCTACTTGGTTTGTCTGAGATAAAGTTGATTGCATCGGCGGGAGCCGGAATCCAT
JMFN037J15+ TCACTTCTACTTGGTTTGTCTGAGATAAAGTTGATTGCATCGGCGGGAGCCGGAATCCAT
JMFN007G08+ TCACTTCTACTTGGTTTGTCTGAGATAAAGTTGATTGCATCGGCGGGAGCCGGAATCCAT
rJMFF031E12- TCACTTCTACTTGGTTTGTCTGAGATAAAGTTGATTGCATCGGCGGGAGCCGGAATCCAT
____________________________________________________________
consensus TCACTTCTACTTGGTTTGTCTGAGATAAAGTTGATTGCATCGGCGGGAGCCGGAATCCAT
. : . : . : . : . : . :
rJMFF006F21- TCATTGGTGGCCGGATTTCCCTTGCAGGAGGCATGAAACTCGGCATCAGAATCAGGTTCT
rJMSF046D19- TCATTGGTGGCCGGATTTCCCTTGCAGGAGGCATGAAACTCGGCATCAGAATCAGGTTCT
rJMFF037E18- TCATTGGTGGCCGGATTTCCCTTGCAGGAGGCATGAAACTCGGCATCAGAATCAGGTTCT
JMFF031E12+ TCATTGGTGGCCGGATTTCCCTTGCAGGAGGCATGAAACTCGGCATCAGAATCAGGTTCT
JMFF037E18+ TCATTGGTGGCCGGATTTCCCTTGCAGGAGGCATGAAACTCGGCATCAGAATCAGGTTCT
JMSF046D19+ TCATTGGTGGCCGGATTTCCCTTGCAGGAGGCATGAAACTCGGCATCAGAATCAGGTTCT
JMFN037J15+ TCATTGGTGGCCGGATTTCCCTTGCAGGAGGCATGAAACTCGGCATCAGAATCAGGTTCT
JMFN007G08+ TCATTGGTGGCCGGATTTCCCTTGCAGGAGGCATGAAACTCGGCATCAGAATCAGGTTCT
rJMFF031E12- TCATTGGTGGCCGGATTTCCCTTGCAGGAGGCATGAAACTCGGCATCAGAATCAGGTTCT
JMFF006F21+ CCGGATTTCCCTTGCAGGAGGCATGAAACTCGGCATCAGAATCAGGTTCT
____________________________________________________________
consensus TCATTGGTGGCCGGATTTCCCTTGCAGGAGGCATGAAACTCGGCATCAGAATCAGGTTCT
. : . : . : . : . : . :
rJMFF006F21- ATTTTGAAGGAATTCGGCAATGCCCCCTCCACCTTTATAAATCCTGTTCCAGTCGTGTGG
rJMSF046D19- ATTTTGAAGGAATTCGGCAATGCCCCCTCCACCTTTATAAATCCTGTTCCAGTCGTGTGG
rJMFF037E18- ATTTTGAAGGAATTCGGCAATGCCCCCTCCACCTTTATAAATCCTGTTCCAGTCGTGTGG
JMFF031E12+ ATTTTGAAGGAATTCGGCAATGCCCCCTCCACCTTTATAAATCCTGTTCCAGTCGTGTGG
JMFF037E18+ ATTTTGAAGGAATTCGGCAATGCCCCCTCCACCTTTATAAATCCTGTTCCAGTCGTGTGG
JMSF046D19+ ATTTTGAAGGAATTCGGCAATGCCCCCTCCACCTTTATAAATCCTGTTCCAGTCGTGTGG
JMFN037J15+ ATTTTGAAGGAATTCGGCAATGCCCCCTCCACCTTTATAAATCCTGTTCCAGTCGTGTGG
JMFN007G08+ ATTTTGAAGGAATTCGGCAATGCCCCCTCCACCTTTATAAATCCTGTTCCAGTCGTGTGG
rJMFF031E12- ATTTTGAAGGAATTCGGCAATGCCCCCTCCACCTTTATAAATCCTGTTCCAGTCGTGTGG
JMFF006F21+ ATTTTGAAGGAATTCGGCAATGCCCCCTCCACCTTTATAAATCCTGTTCCAGTCGTGTGG
____________________________________________________________
consensus ATTTTGAAGGAATTCGGCAATGCCCCCTCCACCTTTATAAATCCTGTTCCAGTCGTGTGG
. : . : . : . : . : . :
rJMFF006F21- TGTTGCTTGTCAACGCAATTCAGATCCTTGTAATACTCAGTTTCCACAAATTCCTCCCTC
rJMSF046D19- TGTTGCTTGTCAACGCAATTCAGATCCTTGTAATACTCAGTTTCCACAAATTCCTCCCTC
rJMFF037E18- TGTTGCTTGTCAACGCAATTCAGATCCTTGTAATACTCAGTTTCCACAAATTCCTCCCTC
JMFF031E12+ TGTTGCTTGTCAACGCAATTCAGATCCTTGTAATACTCAGTTTCCACAAATTCCTCCCTC
JMFF037E18+ TGTTGCTTGTCAACGCAATTCAGATCCTTGTAATACTCAGTTTCCACAAATTCCTCCCTC
JMSF046D19+ TGTTGCTTGTCAACGCAATTCAGATCCTTGTAATACTCAGTTTCCACAAATTCCTCCCTC
JMFN037J15+ TGTTGCTTGTCAACGCAATTCAGATCCTTGTAATACTCAGTTTCCACAAATTCCTCCCTC
JMFN007G08+ TGTTGCTTGTCAACGCAATTCAGATCCTTGTAATACTCAGTTTCCACAAATTCCTCCCTC
rJMFF031E12- TGTTGCTTGTCAACGCAATTCAGATCCTTGTAATACTCAGTTTCCACAAATTCCTCCCTC
JMFF006F21+ TGTTGCTTGTCAACGCAATTCAGATCCTTGTAATACTCAGTTTCCACAAATTCCTCCCTC
____________________________________________________________
consensus TGTTGCTTGTCAACGCAATTCAGATCCTTGTAATACTCAGTTTCCACAAATTCCTCCCTC
. : . : . : . : . : . :
rJMFF006F21- AATTGGCCTTCACTATAACATAATTTCTGTTGATCTTTTTCGAGGCGNTGAAATTGAAGG
rJMSF046D19- AATTGGCCTTCACTATAACATAATTTCTGTTGATCTTTTTCGAGGCGTTGAAATTGAAGG
rJMFF037E18- AATTGGCCTTCACTATAACATAATTTCTGTTGATCTTTTTCGAGGCGTTGAAATTGAAGG
JMFF031E12+ AATTGGCCTTCACTATAACATAATTTCTGTTGATCTTTTTCGAGGCGTTGAAATTGAAGG
JMFF037E18+ AATTGGCCTTCACTATAACATAATTTCTGTTGATCTTTTTCGAGGCGTTGAAATTGAAGG
JMSF046D19+ AATTGGCCTTCACTATAACATAATTTCTGTTGATCTTTTTCGAGGCGTTGAAATTGAAGG
JMFN037J15+ AATTGGCCTTCACTATAACATAATTTCTGTTGATCTTTTTCGAGGCGTTGAAATTGAAGG
JMFN007G08+ AATTGGCCTTCACTATAACATAATTTCTGTTGATCTTTTTCGAGGCGTTGAAATTGAAGG
rJMFF031E12- AATTGGCCTTCACTATAACATAATTTCTGTTGATCTTTTTCGAGGCGTTGAAATTGAAGG
JMFF006F21+ AATTGGCCTTCACTATAACATAATTTCTGTTGATCTTTTTCGAGGCGTTGAAATTGAAGG
____________________________________________________________
consensus AATTGGCCTTCACTATAACATAATTTCTGTTGATCTTTTTCGAGGCGTTGAAATTGAAGG
. : . : . : . : . : . :
rJMFF006F21- AGTTCAGGGATTTCGCCGTCTCCATGAACGCNATTGAAATAGGTATCCGTATACGTAGA
rJMSF046D19- AGTTCAGGGATTTCGCCGTCTCCATGAACGCGATTGAAATAGGTATCCGTATACGTAGAA
rJMFF037E18- AGTTCAGGGATTTCGCCGTCTCCATGAACGCGATTGAAATAGGTATCCGTATACGTAGAA
JMFF031E12+ AGTTCAGGGATTTCGCCGTCTCCATGAACGCGATTGAAATAGGTATCCGTATACGTAGAA
JMFF037E18+ AGTTCAGGGATTTCGCCGTCTCCATGAACGCGATTGAAATAGGTATCCGTATACGTAGAA
JMSF046D19+ AGTTCAGGGATTTCGCCGTCTCCATGAACGCGATTGAAATAGGTATCCGTATACGTAGAA
JMFN037J15+ AGTTCAGGGATTTCGCCGTCTCCATGAACGCGATTGAAATAGGTATCCGTATACGTAGAA
JMFN007G08+ AGTTCAGGGATTTCGCCGTCTCCATGAACGCGATTGAAATAGGTATCCGTATACGTAGAA
rJMFF031E12- AGTTCAGGGATTTCGCCGTCTCCATGAACGCGATTGAAATAGGTATCCGTATACGTAGAA
JMFF006F21+ AGTTCAGGGATTTCGCCGTCTCCATGAACGCGATTGAAATAGGTATCCGTATACGTAGAA
____________________________________________________________
consensus AGTTCAGGGATTTCGCCGTCTCCATGAACGCGATTGAAATAGGTATCCGTATACGTAGAA
. : . : . : . : . : . :
rJMSF046D19- GAGTAATCGCTTCTGTGTGGTTTAGAGTGGCGGTTTGGAGCTAAGTCATCGAAGTGCTTC
rJMFF037E18- GAGTAATCGCTTCTGTGTGGTTTAGAGTGGCGGTTTGGAGCTAAGTCATCGAAGTGCTTC
JMFF031E12+ GAGTAATCGCTTCTGTGTGGTTTAGAGTGGCGGTTTGGAGCTAAGTCATCGAAGTGCTTC
JMFF037E18+ GAGTAATCGCTTCTGTGTGGTTTAGAGTGGCGGTTTGGAGCTAAGTCATCGAAGTGCTTC
JMSF046D19+ GAGTAATCGCTTCTGTGTGGTTTAGAGTGGCGGTTTGGAGCTAAGTCATCGAAGTGCTTC
JMFN037J15+ GAGTAATCGCTTCTGTGTGGTTTAGAGTGGCGGTTTGGAGCTAAGTCATCGAAGTGCTTC
JMFN007G08+ GAGTAATCGCTTCTGTGTGGTTTAGAGTGGCGGTTTGGAGCTAAGTCATCGAAGTGCTTC
rJMFF031E12- GAGTAATCGCTTCTGTGTGGTTTAGAGTGGCGGTTTGGAGCTAAGTCATCGAAGTGCTTC
JMFF006F21+ GAGTAATCGCTTCTGTGTGGTTTAGAGTGGCGGTTTGGAGCTAAGTCATCGAAGTGCTTC
____________________________________________________________
consensus GAGTAATCGCTTCTGTGTGGTTTAGAGTGGCGGTTTGGAGCTAAGTCATCGAAGTGCTTC
. : . : . : . : . : . :
rJMSF046D19- CTGGTGGCTTCCTCCATTGCAGCTTCTTCCTGCGCCGACAGATGAACATCGCTTCGGTTT
rJMFF037E18- CTGGTGGCTTCCTCCATTGCAGCTTCTTCCTGCGCCGACAGATGAACATCGCTTCGGTTT
JMFF031E12+ CTGGTGGCTTCCTCCATTGCAGCTTCTTCCTGCGCCGACAGATGAACATCGCTTCGGTTT
JMFF037E18+ CTGGTGGCTTCCTCCATTGCAGCTTCTTCCTGCGCCGACAGATGAACATCGCTTCGGTTT
JMSF046D19+ CTGGTGGCTTCCTCCATTGCAGCTTCTTCCTGCGCCGACAGATGAACATCGCTTCGGTTT
JMFN037J15+ CTGGTGGCTTCCTCCATTGCAGCTTCTTCCTGCGCCGACAGATGAACATCGCTTCGGTTT
JMFN007G08+ CTGGTGGCTTCCTCCATTGCAGCTTCTTCCTGCGCCGACAGATGAACATCGCTTCGGTTT
rJMFF031E12- CTGGTGGCTTCCTCCATTGCAGCTTCTTCCTGCGCCGACAGATGAACATCGCTTCGGTTT
JMFF006F21+ CTGGTGGCTTCCTCCATTGCAGCTTCTTCCTGCGCCGACAGATGAACATCGCTTCGGTTT
____________________________________________________________
consensus CTGGTGGCTTCCTCCATTGCAGCTTCTTCCTGCGCCGACAGATGAACATCGCTTCGGTTT
. : . : . : . : . : . :
rJMSF046D19- GGTTTGCCGCCGCAGCATGCCATTTCAATTCCTTGATTGATTTCGATCTTCACTTTTGCT
rJMFF037E18- GGTTTGCCGCCGCAGCATGCCATTTCAATTCCTTGATTGATTTCGATCTTCACTTTTGCT
JMFF031E12+ GGTTTGCCGCCGCAGCATGCCATTTCAATTCCTTGATTGATTTCGATCTTCACTTTTGCT
JMFF037E18+ GGTTTGCCGCCGCAGCATGCCATTTCAATTCCTTGATTGATTTCGATCTTCACTTTTGCT
JMSF046D19+ GGTTTGCCGCCGCAGCATGCCATTTCAATTCCTTGATTGATTTCGATCTTCACTTTTGCT
JMFN037J15+ GGTTTGCCGCCGCAGCATGCCATTTCAATTCCTTGATTGATTTCGATCTTCACTTTTGCT
JMFN007G08+ GGTTTGCCGCCGCAGCATGCCATTTCAATTCCTTGA
rJMFF031E12- GGTTTGCCGCCGCAGCATGCCATTTCAATTCCTTGATTGATTTCGATCTTCACTTTTGCT
JMFF006F21+ GGTTTGCCGCCGCAGCATGCCATTTCAATTCCTTGATTGATTTCGATCTTCACTTTTGCT
____________________________________________________________
consensus GGTTTGCCGCCGCAGCATGCCATTTCAATTCCTTGATTGATTTCGATCTTCACTTTTGCT
. : . : . : . : . : . :
rJMSF046D19- TTTCTGCCCTACTTTGATTCGA
rJMFF037E18- TTTCTGCCCTACTTTGATTC
JMFF031E12+ TTTCTGCCCTACTTTGATTCGA
JMFF037E18+ TTTCTGCCCTACTTTGATTC
JMSF046D19+ TTTCTGCCCTACTTTGATTCGA
JMFN037J15+ TTTCTGCCCTACTTTGATTCGA
rJMFF031E12- TTTCTGCCCTACTTTGATTCGAT
JMFF006F21+ TTTCTGCCCTACTTTGATTCGATGTTCTCTTCGATCTGATTGAATTAATTGGAATTAATA
____________________________________________________________
consensus TTTCTGCCCTACTTTGATTCGATGTTCTCTTCGATCTGATTGAATTAATTGGAATTAATA
. : . : . : . : . : . :
JMFF006F21+ CCAGCTAGGGCTCACCAACTATGTAGCTTAATTGCCTAGATATTTTTCTTTTGGGAAGAT
____________________________________________________________
consensus CCAGCTAGGGCTCACCAACTATGTAGCTTAATTGCCTAGATATTTTTCTTTTGGGAAGAT