Contig 011468:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFS040E06+                  TGAATTTTATAAAATTGAGATACATATATTTTTCCCTAATTTAAAGAGCTCTG
rJMSF018N16-                             AATTGAGATACATATATTTTTCCCTAATTTAAAGAGCTCTG
rJMFF004C06-                             AATTGAGATACATATATTTTTCCCTAATTTAAAGAGCTCTG
                      ____________________________________________________________
consensus                    TGAATTTTATAAAATTGAGATACATATATTTTTCCCTAATTTAAAGAGCTCTG
 
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JMFS040E06+           GTGTGGGGGACATGCAAGACCCACCAGCCATGCCTAACCTTACAAATTTTATGAAAGGAG
rJMSF018N16-          GTGTGGGGGACATGCAAGACCCACCAGCCATGCCTAACCTTACAAATTTTATGAAAGGAG
rJMFF004C06-          GTGTGGGGGACATGCAAGACCCACCAGCCATGCCTAACCTTACAAATTTTATGAAAGGAG
                      ____________________________________________________________
consensus             GTGTGGGGGACATGCAAGACCCACCAGCCATGCCTAACCTTACAAATTTTATGAAAGGAG
 
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JMFS040E06+           ACAAATAACTAATTCACCATTTTGTATACCATTTTGACAAAAGTATTATTACGACACAAA
rJMSF018N16-          ACAAATAACTAATTCACCATTTTGTATACCATTTTGACAAAAGTATTATTACGACACAAA
rJMFF004C06-          ACAAATAACTAATTCACCATTTTTTATACCATTTTGACAAAAGTATTATTACGACACAAA
                      ____________________________________________________________
consensus             ACAAATAACTAATTCACCATTTTGTATACCATTTTGACAAAAGTATTATTACGACACAAA
 
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JMFS040E06+           GACAAGGCCTATCTATTATGCATATGCGGTGCTAAAGTAGGTGTTGACCACATTGTTGCA
rJMSF018N16-          GACAAGGCCTATCTATTATGCATATGCGGTGCTAAAGTAGGTGTTGACCACATTGTTGCA
rJMFF004C06-          GACAAGGCCTATCTATTATGCATATGCGGTGCTAAAGTAGGTGTTGACCACATTGTTGCA
                      ____________________________________________________________
consensus             GACAAGGCCTATCTATTATGCATATGCGGTGCTAAAGTAGGTGTTGACCACATTGTTGCA
 
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JMFS040E06+           CAGAATCGCAAGAACCGCGGTGTTATTTGCCCCAACACACCTGGGAGTCTTGAACTGACT
rJMSF018N16-          CAGAATCGCAAGAACCGCGGTGTTATTTGCCCCAACACACCTGGGAGTCTTGAACTGACT
rJMFF004C06-          CAGAATCGCAAGAACCGCGGTGTTATTTGCCCCAACACACCTGGGAGTCTTGAACTGACT
                      ____________________________________________________________
consensus             CAGAATCGCAAGAACCGCGGTGTTATTTGCCCCAACACACCTGGGAGTCTTGAACTGACT
 
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JMFS040E06+           AACAGAAGCTCCTAAGCCTACATAATGGTCCAAAATCTTGTGAAACGTGCCCCGTCTCAC
rJMSF018N16-          AACAGAAGCTCCTAAGCCTACATAATGGTCCAAAATCTTGTGAAACGTGCCCCGTCTCAC
rJMFF004C06-          AACAGAAGCTCCTAAGCCTACATAATGGTCCAAAATCTTGTGAAACGTGCCCCGTCTCAC
                      ____________________________________________________________
consensus             AACAGAAGCTCCTAAGCCTACATAATGGTCCAAAATCTTGTGAAACGTGCCCCGTCTCAC
 
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JMFS040E06+           CACCCGGAGCTCCAGCGGCCCGATGGAGTTCACCTTCCGGGAGCTCATGTAGCCCGCGTC
rJMSF018N16-          CACCCGGAGCTCCAGCGGCCCGATGGAGTTCACCTTCCGGGAGCTCATGTAGCCCGCGTC
rJMFF004C06-          CACCCGGAGCTCCAGCGGCCCGATGGAGTTCACCTTCCGGGAGCTCATGTAGCCCGCGTC
                      ____________________________________________________________
consensus             CACCCGGAGCTCCAGCGGCCCGATGGAGTTCACCTTCCGGGAGCTCATGTAGCCCGCGTC
 
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JMFS040E06+           CAAGAACGAGCGGTCCAAGCAGTTACAGCACTCCTTGAGGACCTCGTCGCTGGCTTCCCC
rJMSF018N16-          CAAGAACGAGCGGTCCAAGCAGTTACAGCACTCCTTGAGGACCTCGTCGCTGGCTTCCCC
rJMFF004C06-          CAAGAACGAGCGGTCCAAGCAGTTACAGCACTCCTTGAGGACCTCGTCGCTGGCTTCCCC
JMFF004C06+                                                              GGCTTCCCC
                      ____________________________________________________________
consensus             CAAGAACGAGCGGTCCAAGCAGTTACAGCACTCCTTGAGGACCTCGTCGCTGGCTTCCCC
 
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JMFS040E06+           GCTCACCTCCCAGAAGACCACATAGTTCCCGGGGTCTGTCGAGGTGTTGACGTGGCTCGT
rJMSF018N16-          GCTCACCTCCCAGAAGACCACATAGTTCCCGGGGTCTGTCGAGGTGTTGACGTGGCTCGT
rJMFF004C06-          GCTCACCTCCCAGAAGACCACATAGTTCCCGGGGTCTGTCGAGGTGTTGACGTGGCTCGT
JMFF004C06+           GCTCACCTCCCAGAAGACCACATAGTTCCCGGGGTCTGTCGAGGTGTTGACGTGGCTCGT
                      ____________________________________________________________
consensus             GCTCACCTCCCAGAAGACCACATAGTTCCCGGGGTCTGTCGAGGTGTTGACGTGGCTCGT
 
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JMFS040E06+           GAAGTCCACCACTTCCAGCTTCGAGTCGGCCAGGATCTTCGCGGCTGCCTCCACCGATAT
rJMSF018N16-          GAAGTCCACCACTTCCAGCTTCGAGTCGGCCAGGATCTTCGCGGCTGCCTCCACCGATAT
rJMFF004C06-          GAAGTCCACCACTTCCAGCTTCGAGTCGGCCAGGATCTTCGCGGCTGCCTCCACCGATAT
JMFF004C06+           GAAGTCCACCACTTCCAGCTTCGAGTCGGCCAGGATCTTCGCGGCTGCCTCCACCGATAT
                      ____________________________________________________________
consensus             GAAGTCCACCACTTCCAGCTTCGAGTCGGCCAGGATCTTCGCGGCTGCCTCCACCGATAT
 
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JMFS040E06+           CTG                                                         
rJMSF018N16-          CTGCAGGTCCTTCTCGGTGTTCTTGTCGATGTTGATGCTCAGCAGGAGGTTCCTCCTGCA
rJMFF004C06-          CTGCAGGTCCTTCTCGGTGTTCTTGTCGATGTTGATGCTCAGCAGGAGGTTCCTCCTGCA
JMFF004C06+           CTGCAGGTCCTTCTCGGTGTTCTTGTCGATGTTGATGCTCAGCAGGAGGTTCCTCCTGCA
                      ____________________________________________________________
consensus             CTGCAGGTCCTTCTCGGTGTTCTTGTCGATGTTGATGCTCAGCAGGAGGTTCCTCCTGCA
 
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rJMSF018N16-          TATGAACTGCAGCTCGGGGGTCGAGTTGTGGAAGCCCTTCACCTTCACAACATCCC    
rJMFF004C06-          TATGAACTGCAGCTCGGGGGTCGAGTTGTGGAAGCCCTTCACCTTCACAACATCCC    
JMFF004C06+           TATGAACTGCAGCTCGGGGGTCGAGTTGTGGAAGCCCTTCACCTTCACAACATCCCCCAG
                      ____________________________________________________________
consensus             TATGAACTGCAGCTCGGGGGTCGAGTTGTGGAAGCCCTTCACCTTCACAACATCCCCCAG
 
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JMFF004C06+           CCGATAACGATACAAGCCTGCGAAGTTGGTGACAATGATTTCATACTCCTCCCCGACTTT
                      ____________________________________________________________
consensus             CCGATAACGATACAAGCCTGCGAAGTTGGTGACAATGATTTCATACTCCTCCCCGACTTT
 
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JMFF004C06+           GACTTCAGTTAAGCCAACCGGGCTAGGCTCCAGCTCTAAACCATCTACGTTATCCTTCAG
                      ____________________________________________________________
consensus             GACTTCAGTTAAGCCAACCGGGCTAGGCTCCAGCTCTAAACCATCTACGTTATCCTTCAG
 
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JMFF004C06+           GGGGATAAACTCGAAATACCCTATGTTAGGGAGCACTGCAAAGGTAACCGACTCGGGAGG
                      ____________________________________________________________
consensus             GGGGATAAACTCGAAATACCCTATGTTAGGGAGCACTGCAAAGGTAACCGACTCGGGAGG
 
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JMFF004C06+           AAATTTGGGGTTGACATTCGCAGCAATCCATCCTTCAGATGACCCGTAATCCGCACTTAG
                      ____________________________________________________________
consensus             AAATTTGGGGTTGACATTCGCAGCAATCCATCCTTCAGATGACCCGTAATCCGCACTTAG
 
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JMFF004C06+           CAGAGGCAAATCCCCAGCATAGTGCCTCAACTTCTTCAGGTAAGGTTCCATCGATCCGGT
                      ____________________________________________________________
consensus             CAGAGGCAAATCCCCAGCATAGTGCCTCAACTTCTTCAGGTAAGGTTCCATCGATCCGGT