Contig 011454:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFN025L20+                  TTTTTTAAATCAGACTAATAGCCAAGTGTATAAAGAACAAATCCCAGGATAAA
rJMFF034F09-                          TCAGACTAATAGCCAAGTGTATAAAGAACAAATCCCAGGATAAA
                      ____________________________________________________________
consensus                    TTTTTTAAATCAGACTAATAGCCAAGTGTATAAAGAACAAATCCCAGGATAAA
 
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JMFN025L20+           ATATTATGTTTGATGTATACAACAAAGAGTGGTGAAAGCGATCCGCGATTACAAAAGACA
rJMFF034F09-          ATATTATGTTTGATGTATACAACAAAGAGTGGTGAAAGCGATCCGCGATTACAAAAGACA
                      ____________________________________________________________
consensus             ATATTATGTTTGATGTATACAACAAAGAGTGGTGAAAGCGATCCGCGATTACAAAAGACA
 
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JMFN025L20+           AGAGTTAGGTAAGACAACAAGAAACTACCTAATCCATCAACAATGAAAAGGAGATAATCT
rJMFF034F09-          AGAGTTAGGTAAGACAACAAGAAACTACCTAATCCATCAACAATGAAAAGGAGATAATCT
                      ____________________________________________________________
consensus             AGAGTTAGGTAAGACAACAAGAAACTACCTAATCCATCAACAATGAAAAGGAGATAATCT
 
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JMFN025L20+           ATGGAGCTAGGAAGGTGAAGCCCTAATGTTTTCAATCATAAATTCAATACTTGTGGAGAG
rJMFF034F09-          ATGGAGCTAGGAAGGTGAAGCCCTAATGTTTTCAATCATAAATTCAATACTTGTGGAGAG
                      ____________________________________________________________
consensus             ATGGAGCTAGGAAGGTGAAGCCCTAATGTTTTCAATCATAAATTCAATACTTGTGGAGAG
 
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JMFN025L20+           AGCTTTTCCCAGGAAAAATAATTCAACATTCTAACCAAGTCTGCTTTTTGAAGAAACTCA
rJMFF034F09-          AGCTTTTCCCAGGAAAAATAATTCAACATTCTAACCAAGTCTGCTTTTTGAAGAAACTCA
                      ____________________________________________________________
consensus             AGCTTTTCCCAGGAAAAATAATTCAACATTCTAACCAAGTCTGCTTTTTGAAGAAACTCA
 
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JMFN025L20+           TGGTCTACCATGATAGGATTTAATCTACCAGAAGCATCATCAATCTTTGGGAGTGGACGT
rJMFF034F09-          TGGTCTACCATGATATGATTTAATCTACCAGAAGCATCATCAATCTTTGGGAGTGGACGT
                      ____________________________________________________________
consensus             TGGTCTACCATGATATGATTTAATCTACCAGAAGCATCATCAATCTTTGGGAGTGGACGT
 
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JMFN025L20+           GTCTTCAGAGGGAACTGCTTTCTTCCCTGTGTAACGCTGCTTGCCAAATGTGAAGGGGAC
rJMFF034F09-          GTCTTCAGAGGGAACTGCTTTCTTCCCTGTGTAACGCTGCTTGCCAAATGTGAAGGGGAC
                      ____________________________________________________________
consensus             GTCTTCAGAGGGAACTGCTTTCTTCCCTGTGTAACGCTGCTTGCCAAATGTGAAGGGGAC
 
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JMFN025L20+           ATACTTATATTTCATCATGTGCATTATCTGCCTCTTCATTG-TGAAATAAACAGTACCAA
rJMFF034F09-          ATACTTATATTTCATCATGTGCATTATCTGCCTCTTCATTGTTGAAATAAACAGTACCAA
                      ____________________________________________________________
consensus             ATACTTATATTTCATCATGTGCATTATCTGCCTCTTCATTGTTGAAATAAACAGTACCAA
 
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JMFN025L20+           CCAATAGAACAATAGAATTGGCCAAA                                  
rJMFF034F09-          CCAATAGAACAATAGAATTGGCCAAAAAACAGGCACATCAAAGGCACCGAAGAACGTCAG
rJMCP016H01+                                                               ACGTCAG
                      ____________________________________________________________
consensus             CCAATAGAACAATAGAATTGGCCAAAAAACAGGCACATCAAAGGCACCGAAGAACGTCAG
 
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rJMFF034F09-          GGCAAAAGCAAAGATGAATGCCTTTGTAAGTGAATGCCAGAACTTGAATTCAGGGAGGCG
rJMCP016H01+          GGCAAAAGCAAAGtTGAATGCCTTTGTAAcaGAATGCCAGAACTTGAATTCAGGGAGcgc
                      ____________________________________________________________
consensus             GGCAAAAGCAAAGATGAATGCCTTTGTAAGTGAATGCCAGAACTTGAATTCAGGGAGGCG
 
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rJMFF034F09-          GCGAACGAAAGGGCGGAACTCGTCGGAGCCCCGAGTGGGGAGGGTGGGGCCATCGGTGAG
rJMCP016H01+          cgcAACGAAAGGGCGGAACagcagcctGCCCCGAGTGGGGAGGcacGGGCCATCGGTGAG
                      ____________________________________________________________
consensus             GCGAACGAAAGGGCGGAACTCGTCGGAGCCCCGAGTGGGGAGGGTGGGGCCATCGGTGAG
 
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rJMFF034F09-          CTCCTGGATCTCGGGATCAACCTGCGGGGAAAGGAAAGCAATAAGGAGCTGGATGACGTA
rJMCP016H01+          CTCgTGGAagagcGGATCAACCTGCGGGGAAAGGAAAGCAATAAGGAcgTGGATGtgcTA
                      ____________________________________________________________
consensus             CTCCTGGATCTCGGGATCAACCTGCGGGGAAAGGAAAGCAATAAGGAGCTGGATGACGTA
 
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rJMFF034F09-          GATGCCGAGGGCGTAGGTCACGATGTAGAATCCTTCGACTAGGT                
rJMCP016H01+          GATGCCGAGGGCGTAGGTCACGATGTAGAATCCTagcACTAGGTACACCCGGACGcgcTA
                      ____________________________________________________________
consensus             GATGCCGAGGGCGTAGGTCACGATGTAGAATCCTTCGACTAGGTACACCCGGACGGCGTA
 
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rJMCP016H01+          GATGAGCGCgtgGATCAATAAGAAGATCCAGCGGCGGAGCtgCAcgccgcagcACTTGTC
                      ____________________________________________________________
consensus             GATGAGCGCCACGATCAATAAGAAGATCCAGCGGCGGAGCACCAGCGGCGTCGACTTGTC
 
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rJMCP016H01+          CAGCtgGTACTGGTACTGCCTCCATtTGGTAAAcgaCCACCcgcACtgGGCGGACGCCCC
                      ____________________________________________________________
consensus             CAGCACGTACTGGTACTGCCTCCATATGGTAAAGCTCCACCGCGACACGGCGGACGCCCC
 
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rJMCP016H01+          AagcTCGCCGGCTGTTCCGCCAgCGACATTCAaTTTCGCCGTTTTgcCAtaTTAGCTTCC
                      ____________________________________________________________
consensus             ATCGTCGCCGGCTGTTCCGCCACCGACATTCATTTTCGCCGTTTTCGCAATTTAGCTTCC
 
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JMFF034F09+                     TTTTTTTTTTCTTTTATTGTTTGGGAGGTCGCCTTTTATTATTATTATTA
rJMCP016H01+          TTTTTCCCTTTTTTTTTTTTCTTTTATTGTTTGGGAGGTCGCCTTTTATTATTATTATTA
                      ____________________________________________________________
consensus             TTTTTCCCTTTTTTTTTTTTCTTTTATTGTTTGGGAGGTCGCCTTTTATTATTATTATTA
 
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JMFF034F09+           TTATTTTTCGAGATTTTTCCCAAATCGCAATGAAAGAAAGTAAACGCTCTCTTCTTCTTC
rJMCP016H01+          TTATTTTTCGAGATTTTTCCCAAATCGgttacAAAGAAAGTAAACGCTCTCTTCTTCTTC
                      ____________________________________________________________
consensus             TTATTTTTCGAGATTTTTCCCAAATCGCAATGAAAGAAAGTAAACGCTCTCTTCTTCTTC
 
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JMFF034F09+           TCGTCGCCCTGT                                                
rJMCP016H01+          TCGTCGCACTGTGAACCGTGAAATTCTTGTCCCTCACTTTCTTATATacgttTTAGGACC
                      ____________________________________________________________
consensus             TCGTCGCCCTGTGAACCGTGAAATTCTTGTCCCTCACTTTCTTATATTGCAATTAGGACC