Contig 011447:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF023G09+                           AGAAAANCAAGAAAAAGTCCCAGAAGCCTCGAATAGAGCTTGG
rJMSF052P06+                                         AAGTCCCAGAAGCCTCGAATAGAGCTTGG
                      ____________________________________________________________
consensus                              AGAAAANCAAGAAAAAGTCCCAGAAGCCTCGAATAGAGCTTGG
 
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rJMSF023G09+          GCTATCATCTAGTACAGCGCTACCCGAACTAATTGCAGAGCCTACTTCAGCTCGGTCAAT
rJMSF052P06+          GCTATCATCTAGTACAGCGCTACCCGAACTAATTGCAGAGCCTACTTCAGCTCGGTCAAT
                      ____________________________________________________________
consensus             GCTATCATCTAGTACAGCGCTACCCGAACTAATTGCAGAGCCTACTTCAGCTCGGTCAAT
 
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rJMSF023G09+          GTCATTTGTAGGGACACATGAATATTTAGCTCCGGAGATCATCAAGGGAGAAGGCCATGG
rJMSF052P06+          GTCATTTGTAGGGACACATGAATATTTAGCTCCGGAGATCATCAAGGGAGAAGGCCATGG
                      ____________________________________________________________
consensus             GTCATTTGTAGGGACACATGAATATTTAGCTCCGGAGATCATCAAGGGAGAAGGCCATGG
 
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rJMSF023G09+          CAGTGCAGTTGATTGGTGGACATTTGGCATATTCTTGCACGAATTACTATATGGTAAAAC
rJMSF052P06+          CAGTGCAGTTGATTGGTGGACATTTGGCATATTCTTGCACGAATTACTATATGGTAAAAC
                      ____________________________________________________________
consensus             CAGTGCAGTTGATTGGTGGACATTTGGCATATTCTTGCACGAATTACTATATGGTAAAAC
 
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rJMSF023G09+          TCCATTTAAAGGGTCGGGAAACAGAGCAACTCTTTTCAATGTAGTAGGGCAGCAGCTCAA
rJMSF052P06+          TCCATTTAAAGGGTCGGGAAACAGAGCAACTCTTTTCAATGTAGTAGGGCAGCAGCTCAA
                      ____________________________________________________________
consensus             TCCATTTAAAGGGTCGGGAAACAGAGCAACTCTTTTCAATGTAGTAGGGCAGCAGCTCAA
 
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rJMSF023G09+          GTTCCCAGATTCACCTGCAACCAGTTATGCAAGCCGGGATCTTATCCGTGGCTTACTTGT
rJMSF052P06+          GTTCCCAGATTCACCTGCAACCAGTTATGCAAGCCGGGATCTTATCCGTGGCTTACTTGT
                      ____________________________________________________________
consensus             GTTCCCAGATTCACCTGCAACCAGTTATGCAAGCCGGGATCTTATCCGTGGCTTACTTGT
 
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rJMSF023G09+          TAAAGAGCCACAACATCGGCTTGGGGTAAAGAGAGGAGCCACCGAAATTAAACAACACCC
rJMSF052P06+          TAAAGAGCCACAACATCGGCTTGGGGTAAAGAGAGGAGCCACCGAAATTAAACAACACCC
                      ____________________________________________________________
consensus             TAAAGAGCCACAACATCGGCTTGGGGTAAAGAGAGGAGCCACCGAAATTAAACAACACCC
 
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rJMSF023G09+          CTTCTTTGAAGGCGTTAATTGGGCACTGATTCGATGCAGCACCCCACCAGAAGTACCAAG
rJMSF052P06+          CTTCTTTGAAGGCGTTAATTGGGCACTGATTCGATGCAGCACCCCACCAGAAGTACCAAG
                      ____________________________________________________________
consensus             CTTCTTTGAAGGCGTTAATTGGGCACTGATTCGATGCAGCACCCCACCAGAAGTACCAAG
 
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rJMSF023G09+          ACCAGTCGAACCTGAGCTTCCCCCTGGCGTAAAGATGGGGCAAGGGCAAGTTGATCCCAT
rJMSF052P06+          ACCAGTCGAACCTGAGCTTCCCCCTGGCGTAAAGATGGGGCAAGGGCAAGTTGATCCCAT
                      ____________________________________________________________
consensus             ACCAGTCGAACCTGAGCTTCCCCCTGGCGTAAAGATGGGGCAAGGGCAAGTTGATCCCAT
 
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rJMSF023G09+          CAGTGTTGCTGCCAATAGCAGTAAAAGGATAGTAGGAGGGGTAGGGGTAGGGGCAGGAGC
rJMSF052P06+          CAGTGTTGCTGCCAATAGCAGTAAAAGGATAGTAGGAGGGGTAGGGGTAGGGGCAGGAGC
                      ____________________________________________________________
consensus             CAGTGTTGCTGCCAATAGCAGTAAAAGGATAGTAGGAGGGGTAGGGGTAGGGGCAGGAGC
 
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rJMSF023G09+          AGCAGACATGAAACCCGAGGGTAAATTTCTTGACTTCGAGTTCTTTTAGTATAGGCTTGT
rJMSF052P06+          AGCAGACATGAAACCCGAGGGTAAATTTCTTGACTTCGAGTTCTTTTAGTATAGGCTTGT
                      ____________________________________________________________
consensus             AGCAGACATGAAACCCGAGGGTAAATTTCTTGACTTCGAGTTCTTTTAGTATAGGCTTGT
 
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rJMSF023G09+          TTTTCCATCCATTGTCTTGTCACTTTGTCTTCAACAGATATATCCTCTGTATGGGTTGTT
rJMSF052P06+          TTTTCCATCCATTGTCTTGTCACTTTGTCTTCAACAGATATATCCTCTGTATGGGTTGTT
                      ____________________________________________________________
consensus             TTTTCCATCCATTGTCTTGTCACTTTGTCTTCAACAGATATATCCTCTGTATGGGTTGTT
 
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rJMSF023G09+          TTATCAGTAGTGGCTTCCTAAGTTCCTAGTCCAGCTACCTTAGATATGAATAGGTTCTTT
rJMSF052P06+          TTATCAGTAGTGGCTTCCTAAGTTCCTAGTCCAGCTACCTTAGATATGAATAGGTTCTTT
                      ____________________________________________________________
consensus             TTATCAGTAGTGGCTTCCTAAGTTCCTAGTCCAGCTACCTTAGATATGAATAGGTTCTTT
 
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rJMSF023G09+          TGTGATTAGTTGAAGACAATATAGCTGATGAATTCTATGT                    
rJMSF052P06+          TGTGATTAGTTGAAGACAATATAGCTGATGAATTCTATGTCTATGTTATGATGAATAGGT
                      ____________________________________________________________
consensus             TGTGATTAGTTGAAGACAATATAGCTGATGAATTCTATGTCTATGTTATGATGAATAGGT
 
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rJMSF052P06+          AAAATTCATACAACCTTAATTGTGGGCAAAAACCTTGTGTTTTCACTCCCTAACTGCAAT
                      ____________________________________________________________
consensus             AAAATTCATACAACCTTAATTGTGGGCAAAAACCTTGTGTTTTCACTCCCTAACTGCAAT