| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF012E01 | Sequence | 323 | 011445 (6) | ref|XP_006368095.1| | 207 | PREDICTED: uncharacterized protein LOC102600694, partial [Solanum tuberosum] | 756 | 011445 (6) | ref|XP_002323885.1| | 1e-133 | hypothetical protein POPTR_0017s12590g [Populus trichocarpa] gb|EEF04018.1| hypo |
| JMSF051L19 | Sequence | 688 | 011445 (6) | ref|XP_007032664.1| | 4e-84 | Homoserine O-acetyltransferase isoform 4 [Theobroma cacao] gb|EOY03590.1| Homose | 733 | 011445 (6) | ref|XP_002323885.1| | 2e-129 | hypothetical protein POPTR_0017s12590g [Populus trichocarpa] gb|EEF04018.1| hypo |
| JMSF052M18 | Sequence | 691 | 011445 (6) | ref|XP_010258178.1| | 275 | PREDICTED: uncharacterized protein LOC104598014 [Nelumbo nucifera] | 866 | 011445 (6) | ref|XP_002323885.1| | 2e-142 | hypothetical protein POPTR_0017s12590g [Populus trichocarpa] gb|EEF04018.1| hypo |
This contig is upended
. : . : . : . : . : . :
JMSF051L19- GAACCGTAATCTTGATCCACCTTCCCTTCTGGGTATCAACGGCATCTATCTCAGTAAAAA
JMSF052M18- TCCACCTTCCCTTCTGGGTATCAACGGCATCTATCTCAGTAAAAA
____________________________________________________________
consensus GAACCGTAATCTTGATCCACCTTCCCTTCTGGGTATCAACGGCATCTATCTCAGTAAAAA
. : . : . : . : . : . :
JMSF051L19- TGGCTGCAGCCATGGCTGTACACTCGCCAAAAACACCTCTTATGCAGAGCCCATCATCTC
JMSF052M18- TGGCTGCAGCCATGGCTGTACACTCGCCAAAAACACCTCTTATGCAGAGCCCATCATCTC
____________________________________________________________
consensus TGGCTGCAGCCATGGCTGTACACTCGCCAAAAACACCTCTTATGCAGAGCCCATCATCTC
. : . : . : . : . : . :
JMSF051L19- TCAAGGACCTAAACTCCAGTTTCATTTGTGGGTCGCCATTAAAGAGCCTGTCTTTACAGA
JMSF052M18- TCAAGGACCTAAACTCCAGTTTCATTTGTGGGTCGCCATTAAAGAGCCTGTCTTTACAGA
____________________________________________________________
consensus TCAAGGACCTAAACTCCAGTTTCATTTGTGGGTCGCCATTAAAGAGCCTGTCTTTACAGA
. : . : . : . : . : . :
JMSF051L19- TGCTGCAACCAAGAAGAAGCAGCGGGAGACACGGTGTTAGCTTGGTCATAACCTCCGCCG
JMSF052M18- TGCTGCAACCAAGAAGAAGCAGCGGGAGACACGGTGTTAGCTTGGTCATAACCTCCGCCG
____________________________________________________________
consensus TGCTGCAACCAAGAAGAAGCAGCGGGAGACACGGTGTTAGCTTGGTCATAACCTCCGCCG
. : . : . : . : . : . :
JMSF051L19- TTACTGGAAGCTCTCGATCGGCGGCCAAGACCGTCAAGAACAGCGGCGGTGATGGTGGCG
JMSF052M18- TTACTGGAAGCTCTCGATCGGCGGCCAAGACCGTCAAGAACAGCGGCGGTGATGGTGGCG
____________________________________________________________
consensus TTACTGGAAGCTCTCGATCGGCGGCCAAGACCGTCAAGAACAGCGGCGGTGATGGTGGCG
. : . : . : . : . : . :
JMSF051L19- GCGGTGGGAGGTTTTACCTGAATTTCACTGGGTTTCCTTTTCCCCTCGGCCCTTTCCTCA
JMSF052M18- GCGGTGGGAGGTTTTACCTGAATTTCACTGGGTTTCCTTTTCCCCTCGGCCCTTTCCTCA
____________________________________________________________
consensus GCGGTGGGAGGTTTTACCTGAATTTCACTGGGTTTCCTTTTCCCCTCGGCCCTTTCCTCA
. : . : . : . : . : . :
JMSF051L19- ACCGGCGCACCATTAGAACTGAGGTAGTGAAAGACTGCATTTGGTTATTTGAACAAGAAC
JMSF052M18- ACCGGCGCACCATTAGAACTGAGGTAGTGAAAGACTGCATTTGGTTATTTGAACAAGAAC
____________________________________________________________
consensus ACCGGCGCACCATTAGAACTGAGGTAGTGAAAGACTGCATTTGGTTATTTGAACAAGAAC
. : . : . : . : . : . :
JMSF051L19- AAGCACTGGGCTTCAGCAGTGTCTCAACAAACATCAGAATGACTGTAATCAAACTTAAAT
JMSF052M18- AAGCACTGGGCTTCAGCAGTGTCTCAACAAACATCAGAATGACTGTAATCAAACTTAAAT
____________________________________________________________
consensus AAGCACTGGGCTTCAGCAGTGTCTCAACAAACATCAGAATGACTGTAATCAAACTTAAAT
. : . : . : . : . : . :
JMSF051L19- CGGGCGGGCTATGGATTCATGCACCGATTGCACCAACCAAAGAGTGTATTCAGCTTGTGA
JMSF052M18- CGGGCGGGCTATGGATTCATGCACCGATTGCACCAACCAAAGAGTGTATTCAGCTTGTGA
____________________________________________________________
consensus CGGGCGGGCTATGGATTCATGCACCGATTGCACCAACCAAAGAGTGTATTCAGCTTGTGA
. : . : . : . : . : . :
JMSF051L19- AAGAGTTGGGATATCCCGTGGAATATATTGTGCTGCCTACGTTTGCATATGAGCATAAAA
JMSF052M18- AAGAGTTGGGATATCCCGTGGAATATATTGTGCTGCCTACGTTTGCATATGAGCATAAAA
____________________________________________________________
consensus AAGAGTTGGGATATCCCGTGGAATATATTGTGCTGCCTACGTTTGCATATGAGCATAAAA
. : . : . : . : . : . :
JMSF051L19- TATTTGTTGGCCCGTTCTCGAGGAAGTTTCCACGGGCACAGGTATGGGTGGCACCGAGGC
JMSF052M18- TATTTGTTGGCCCGTTCTCGAGGAAGTTTCCACGGGCACAGGTATGGGTGGCACCGAGGC
JMSF012E01- AAGTTTCCACGGGCACAGGTATGGGTGGCACCGAGGC
____________________________________________________________
consensus TATTTGTTGGCCCGTTCTCGAGGAAGTTTCCACGGGCACAGGTATGGGTGGCACCGAGGC
. : . : . : . : . : . :
JMSF051L19- AATGGAGTNGGCCTTTAAATCTTCCACT
JMSF052M18- AATGGAGTGGGCCTTTAANTCTTCCACTCGAGTTCTTTGGGAT
JMSF012E01- AATGGAGTTGGCCTTTAAATCTTCCACTCGAGTTCTTTGGGATATTTCGTGCCAAAACCT
rJMSF052M18+ TCTTTGGGATATTTCGTGCCAAAACCT
____________________________________________________________
consensus AATGGAGTTGGCCTTTAAATCTTCCACTCGAGTTCTTTGGGATATTTCGTGCCAAAACCT
. : . : . : . : . : . :
JMSF012E01- TACAAGACGAAGATCTCTCAACT-CCATGGGCAGATGACATTGAACAGAAAGTTCTTAGC
rJMSF012E01+ C
rJMSF052M18+ TACAAGACGAAGATCTCTCAACTNCCATGGGCAGATGACATTGAACAGAAAGTTCTTAGC
____________________________________________________________
consensus TACAAGACGAAGATCTCTCAACTNCCATGGGCAGATGACATTGAACAGAAAGTTCTTAGC
. : . : . : . : . : . :
JMSF012E01- TCTCCAGAAGTTGGTATTGGACCGTATGTGGAGGTGGCGTTTTATCATAAGCGTTCGCAG
rJMSF051L19+ AAGTTGGTATTGGACCGTATGTGGAGGTGGCGTTTTATCATAAGCGTTCGCAG
rJMSF012E01+ TCTCCAGAAGTTGGTATTGGACCGTATGTGGAGGTGGCGTTTTATCATAAGCGTTCGCAG
rJMSF052M18+ TCTCCAGAAGTTGGTATTGGACCGTATGTGGAGGTGGCGTTTTATCATAAGCGTTCGCAG
____________________________________________________________
consensus TCTCCAGAAGTTGGTATTGGACCGTATGTGGAGGTGGCGTTTTATCATAAGCGTTCGCAG
. : . : . : . : . : . :
JMSF012E01- ACCTTATTAGTGACTGATGCGGTGATATTTGTCCCTAGGAGTCCACCCGAGTGTATAAGC
rJMSF051L19+ ACNTTATTAGTGACTGATGCGGTGATATTTGTCCCTAGGAGTCCACCCGAGTGTATAAGC
rJMSF012E01+ ACCTTATTAGTGACTGATGCGGTGATATTTGTCCCTAGGAGTCCACCCGAGTGTATAAGC
rJMSF052M18+ ACCTTATTAGTGACTGATGCGGTGATATTTGTCCCTAGGAGTCCACCCGAGTGTATAAGC
____________________________________________________________
consensus ACCTTATTAGTGACTGATGCGGTGATATTTGTCCCTAGGAGTCCACCCGAGTGTATAAGC
. : . : . : . : . : . :
JMSF012E01- AAGGAGTCTCTGCTTGCGTCTGCAAAGAACGGTTTGGCTGTCAAACT
rJMSF051L19+ AAGGAGTCTCTGCTTGCGTCTGCAAAGAACGGTTTGGCTGTCAAACTCCTTAGTAAAGGG
rJMSF012E01+ AAGGAGTCTCTGCTTGCGTCTGCAAAGAACGGTTTGGCTGTCAAACTCCTTAGTAAAGGG
rJMSF052M18+ AAGGAGTCTCTGCTTGCGTCTGCAAAGAACGGTTTGGCTGTCAAACTCCTTAGTAAAGGG
____________________________________________________________
consensus AAGGAGTCTCTGCTTGCGTCTGCAAAGAACGGTTTGGCTGTCAAACTCCTTAGTAAAGGG
. : . : . : . : . : . :
rJMSF051L19+ AAAGAAGTCCCCGAAGAGCCAGTTGTTGACAACGAGATGAACCGACAGAAAGGATGGGAG
rJMSF012E01+ AAAGAAGTCCCCGAAGAGCCAGTTGTTGACAACGAGATGAACCGACAGAAAGGATGGGAG
rJMSF052M18+ AAAGAAGTCCCCGAAGAGCCAGTTGTTGACAACGAGATGAACCGACAGAAAGGATGGGAG
____________________________________________________________
consensus AAAGAAGTCCCCGAAGAGCCAGTTGTTGACAACGAGATGAACCGACAGAAAGGATGGGAG
. : . : . : . : . : . :
rJMSF051L19+ AGGATGGTTCTCCAGATTCTTTTTCTAGGCCCGTCAAATCTACTGGAGCCTAACGCTAGC
rJMSF012E01+ AGGATGGTTCTCCAGATTCTTTTTCTAGGCCCGTCAAATCTACTGGAGCCTAACGCTAGC
rJMSF052M18+ AGGATGGTTCTCCAGATTCTTTTTCTAGGCCCGTCAAATCTACTGGAGCCTAACGCTAGC
____________________________________________________________
consensus AGGATGGTTCTCCAGATTCTTTTTCTAGGCCCGTCAAATCTACTGGAGCCTAACGCTAGC
. : . : . : . : . : . :
rJMSF051L19+ TTTGCTCAAATGTCACAGAAACTTATCGTTTCGCCCATCGTGAAGACACTGGTATTCAGC
rJMSF012E01+ TTTGCTCAAATGTCACAGAAACTTATCGTTTCGCCCATCGTGAAGACACTGGTATTCAGC
rJMSF052M18+ TTTGCTCAAATGTCACAGAAACTTATCGTTTCGCCCATCGTGAAGACACTGGTATTCAGC
____________________________________________________________
consensus TTTGCTCAAATGTCACAGAAACTTATCGTTTCGCCCATCGTGAAGACACTGGTATTCAGC
. : . : . : . : . : . :
rJMSF051L19+ AAAGTTCCGGAAAAGGTTAGAGATNGGATTGATGGCATTGTGAGGGACTGGAAGTTCAAG
rJMSF012E01+ AAAGTTCCGGAAAAGGTTAGAGATTGGATTGATGGCATTGTGAGGGACTGGAAGTTCAAG
rJMSF052M18+ AAAGTTCCGGAAAAGGTTAGAGATTGGATTGATGGCATTGTGAGGGACTGGAAGTTCAAG
____________________________________________________________
consensus AAAGTTCCGGAAAAGGTTAGAGATTGGATTGATGGCATTGTGAGGGACTGGAAGTTCAAG
. : . : . : . : . : . :
rJMSF051L19+ AGGATAATCCCGGCTCATTTCGCTGCCCCGATAAATGCAAATAGGTCTGATTTGTTAGCG
rJMSF012E01+ AGGATAATCCCGGCTCATTTCGCTGCCCCGATAAATGCAAATAGGTCTGATTTGTTAGCG
rJMSF052M18+ AGGATAATCCCGGCTCATTTCGCTGCCCCGATAAATGCAAATAGGTCTGATTTGTTAGCG
____________________________________________________________
consensus AGGATAATCCCGGCTCATTTCGCTGCCCCGATAAATGCAAATAGGTCTGATTTGTTAGCG
. : . : . : . : . : . :
rJMSF051L19+ GCGTTTGCATTTCTAGACGATCTCCTGGGAGAGCGCTATGTGACCAGGCCGTCCCTCTCC
rJMSF012E01+ GCGTTTGCATTTCTAGACGATCTCCTGGGAGAGCGCTATGTGACCAGGCCGTCCCTCTCC
rJMSF052M18+ GCGTTTGCATTTCTAGACGATCTCCTGGGAGAGCGCTATGTGACCAGGCCGTCCCTCTCC
____________________________________________________________
consensus GCGTTTGCATTTCTAGACGATCTCCTGGGAGAGCGCTATGTGACCAGGCCGTCCCTCTCC
. : . : . : . : . : . :
rJMSF051L19+ CTCGTCTTCACATCACTCTTGGGAAAAGTCGCGAGCTATTTTCCTCCAGATGATATGAGG
rJMSF012E01+ CTCGTCTTCACATCACTCTTGGGAAAAGCCGCGAGCTATTTTCCTCCAGATGATATGAGG
rJMSF052M18+ CTCGTCTTCACATCACTCTTGGGAAAAGCCGCGAGCTATTTTCCTCCAGATGATATGAGG
____________________________________________________________
consensus CTCGTCTTCACATCACTCTTGGGAAAAGCCGCGAGCTATTTTCCTCCAGATGATATGAGG
. : . : . : . : . : . :
rJMSF051L19+ ACCTTATCATCCCTGGATGACTTCTTGGTCTCAGTNGGAGCAGTGAAGAAAACTGTCTCA
rJMSF012E01+ ACCTTATCATCCCTGGATGACTTCTTGGTCTCAGTTGGAGCAGTGAAGAAAACTGTCTCA
rJMSF052M18+ ACCTTATCATCCCTGGATGACTTCTTGGTCTCAGTTGGAGCAGTGAAGAAAACTGTCTCA
____________________________________________________________
consensus ACCTTATCATCCCTGGATGACTTCTTGGTCTCAGTTGGAGCAGTGAAGAAAACTGTCTCA
. : . : . : . : . : . :
rJMSF051L19+ GGCCGGAAAAAATGACAACAAACCAAACAACACACAGATATGTAGATATAGCGTAGTGAA
rJMSF012E01+ GGCCGGAAAAAATGACAACAAACCAAACAACACACAGATATGTAGATATAGCGTAGTGAA
rJMSF052M18+ GGCCGGAAAAAATGACAACAAACCAAACAACACACAGATATGTAGATATAGCGTAGTGAA
____________________________________________________________
consensus GGCCGGAAAAAATGACAACAAACCAAACAACACACAGATATGTAGATATAGCGTAGTGAA
. : . : . : . : . : . :
rJMSF051L19+ TGAAATATACATAC
rJMSF012E01+ TGAAATATACATACCTTGTGTTGGCTAGTGTAAAC
rJMSF052M18+ TGAAATATACATA-CTTGTGTTGGCTAGTGTAAACTTGTTTACTCTTTCAGCCACGGCAA
____________________________________________________________
consensus TGAAATATACATACCTTGTGTTGGCTAGTGTAAACTTGTTTACTCTTTCAGCCACGGCAA