Contig 011444:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN003N11Sequence613011444 (6)ref|XP_004243593.1|3e-85PREDICTED: probable E3 ubiquitin-protein ligase XERICO isoform X1 [Solanum lyco
JMSF019B19Sequence221011444 (6)744011444 (6)ref|XP_004243593.1|6e-84PREDICTED: probable E3 ubiquitin-protein ligase XERICO isoform X1 [Solanum lyco
JMSF020B19Sequence661010515 (7)ref|XP_009628770.1|3e-20PREDICTED: granule-bound starch synthase 2, chloroplastic/amyloplastic [Nicotia438011444 (6)ref|XP_004243593.1|3e-62PREDICTED: probable E3 ubiquitin-protein ligase XERICO isoform X1 [Solanum lyco
JMSF052J03Sequence665011444 (6)ref|XP_004243593.1|2e-80PREDICTED: probable E3 ubiquitin-protein ligase XERICO isoform X1 [Solanum lyco880011444 (6)ref|XP_004243593.1|9e-84PREDICTED: probable E3 ubiquitin-protein ligase XERICO isoform X1 [Solanum lyco

Alignment

This contig is upended


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JMSF019B19-                             GAGAGGTTATGGCAGGTTCACATCATCAGCCATTATCAATAC
JMSF052J03-                               GAGGTTATGGCAGGTTCACATCATCAGCCATTATCAATAC
rJMSF052J03+                              GAGGTTATGGCAGGTTCACATCATCAGCCATTATCAATAC
                      ____________________________________________________________
consensus                               GAGAGGTTATGGCAGGTTCACATCATCAGCCATTATCAATAC
 
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JMSF019B19-           AACACACCACTGTACCAATCTCTTTCCTTTGGGTTCATATGAATCTCTAATAACTCCCAA
JMSF052J03-           AACACACCACTGTACCAATCTCTTTCCTTTGGGTTCATATGAATCTCTAATAACTCCCAA
JMFN003N11-                                                             TAACTCCCAA
rJMSF052J03+          AACACACCACTGTACCAATCTCTTTCCTTTGGGTTCATATGAATCTCTAATAACTCCCAA
                      ____________________________________________________________
consensus             AACACACCACTGTACCAATCTCTTTCCTTTGGGTTCATATGAATCTCTAATAACTCCCAA
 
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JMSF019B19-           ACTTCATCTTCTTCTTCTCTGAACACTAATAAGAACATCAGATTCTTGCCAAAGGGATCA
rJMSF019B19+                                        AAGAACATCAGATTCTTGCCAAAGGGATCA
JMSF052J03-           ACTTCATCTTCTTCTTCTCTGAACACTAATAAGAACATCAGATTCTTGCCAAAGGGATCA
JMFN003N11-           ACTTCATCTTCTTCTTCTCTGAACACTAATAAGAACATCAGATTCTTGCCAAAGGGATCA
rJMSF052J03+          ACTTCATCTTCTTCTTCTCTGAACACTAATAAGAACATCAGATTCTTGCCAAAGGGATCA
                      ____________________________________________________________
consensus             ACTTCATCTTCTTCTTCTCTGAACACTAATAAGAACATCAGATTCTTGCCAAAGGGATCA
 
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JMSF019B19-           AACTTCTGCACCTCCATCTCTGTATCCTGTGTATTGAGTTCTGTTGGTTTTGCTCAGAG 
rJMSF019B19+          AACTTCTGCACCTCCATCTCTGTATCCTGTGTATTGAGTTCTGTTGGTTTTGCTCAGAGG
JMSF052J03-           AACTTCTGCACCTCCATCTCTGTATCCTGTGTATTGAGTTCTGTTGGTTTTGCTCAGAGG
JMFN003N11-           AACTTCTGCACCTCCATCTCTGTATCCTGTGTATTGAGTTCTGTTGGTTTTGCTCAGAGG
rJMSF052J03+          AACTTCTGCACCTCCATCTCTGTATCCTGTGTATTGAGTTCTGTTGGTTTTGCTCAGAGG
                      ____________________________________________________________
consensus             AACTTCTGCACCTCCATCTCTGTATCCTGTGTATTGAGTTCTGTTGGTTTTGCTCAGAGG
 
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rJMSF019B19+          CAGAAGGTTTCGAGTCTAGTATGGGTCTCTCGCCATATTCTACACCTGCAGATGCGGGTG
JMSF052J03-           CAGAAGGTTTCGAGTCTAGTATGGGTCTCTCGCCATATTCTACACCTGCAGATGCGGGTG
JMFN003N11-           CAGAAGGTTTCGAGTCTAGTATGGGTCTCTCGCCATATTCTACACCTGCAGATGCGGGTG
rJMSF052J03+          CAGAAGGTTTCGAGTCTAGTATGGGTCTCTCGCCATATTCTACACCTGCAGATGCGGGTG
                      ____________________________________________________________
consensus             CAGAAGGTTTCGAGTCTAGTATGGGTCTCTCGCCATATTCTACACCTGCAGATGCGGGTG
 
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rJMSF020B19+                         TGGTCAATNCCGCCATATCCATCTCGATTGTCAAGGAGATTGTCC
rJMSF019B19+          TTCTGTGCGTGATTCTGGTCAATACCGCCATATCCATCTCGATTGTCAAGGAGATTGTCC
JMSF052J03-           TTCTGTGCGTGATTCTGGTCAATACCGCCATATCCATCTCGATTGTCAAGGAGATTGTCC
JMFN003N11-           TTCTGTGCGTGATTCTGGTCAATACCGCCATATCCATCTCGATTGTCAAGGAGATTGTCC
rJMSF052J03+          TTCTGTGCGTGATTCTGGTCAATACCGCCATATCCATCTCGATTGTCAAGGAGATTGTCC
                      ____________________________________________________________
consensus             TTCTGTGCGTGATTCTGGTCAATACCGCCATATCCATCTCGATTGTCAAGGAGATTGTCC
 
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rJMSF020B19+          GGTCAATCCTTAGCGTCATTGGCATCCGGATTGCATCCTGGGAAGACTACACCATTGAAG
rJMSF019B19+          GGTCAATCCTTAGCGTCATTGGCATCCGGATTGCATCCTGGGAAGACTACACCATTGAAG
JMSF052J03-           GGTCAATCCTTAGCGTCATTGGCATCCGGATTGCATCCTGGGAAGACTACACCATTGAAG
JMFN003N11-           GGTCAATCCTTAGCGTCATTGGCATCCGGATTGCATCCTGGGAAGACTACACCATTGAAG
rJMSF052J03+          GGTCAATCCTTAGCGTCATTGGCATCCGGATTGCATCCTGGGAAGACTACACCATTGAAG
                      ____________________________________________________________
consensus             GGTCAATCCTTAGCGTCATTGGCATCCGGATTGCATCCTGGGAAGACTACACCATTGAAG
 
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rJMSF020B19+          GCCCCTTGGACACCCTCGAGTNTCGAGGAACCCCCTCGGAGTCCTACATAGAGGAGTTTN
rJMSF019B19+          GCCCCTTGGACACCCTCGAGTGTCGAGGAACCCCCTCGGAGTCCTACATAGAGGAGTTTC
JMSF052J03-           GCCCCTTGGACACCCTCGAGTGTCGAGGAACCCCCTCGGAGTCCTACATAGAGGAGTTTC
JMFN003N11-           GCCCCTTGGACACCCTCGAGTGTCGAGGAACCCCCTCGGAGTCCTACATAGAGGAGTTTC
rJMSF052J03+          GCCCCTTGGACACCCTCGAGTGTCGAGGAACCCCCTCGGAGTCCTACATAGAGGAGTTTC
                      ____________________________________________________________
consensus             GCCCCTTGGACACCCTCGAGTGTCGAGGAACCCCCTCGGAGTCCTACATAGAGGAGTTTC
 
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rJMSF020B19+          GCAGCNGAACACCNCCCATCCGGTACGACGCAATGTGCATCTNTAACAACCCAGAGCAAG
rJMSF019B19+          GCAGCCGAACACCCCCCATCCGGTACGACGCAATGTGCATCTCTAACAACCCAGAGCAAG
JMSF052J03-           GCAGCCGAACACCCCCCATCCGGTACGACGCAATGTGCATCTCTAACAACCCAGAGCAAG
JMFN003N11-           GCAGCCGAACACCCCCCATCCGGTACGACGCAATGTGCATCTCTAACAACCCAGAGCAAG
rJMSF052J03+          GCAGCCGAACACCCCCCATCCGGTACGACGCAATGTGCATCTCTAACAACCCAGAGCAAG
                      ____________________________________________________________
consensus             GCAGCCGAACACCCCCCATCCGGTACGACGCAATGTGCATCTCTAACAACCCAGAGCAAG
 
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rJMSF020B19+          AGTGTTANNTTTGCCTGGCAGAGTTCAAGCCAGATGCCAAGATAAACCAGCTGCCTTGTG
rJMSF019B19+          AGTGTTCTGTTTGCCTGGCAGAGTTCAAGCCAGATGCCAAGATAAACCAGCTGCCTTGTG
JMSF052J03-           AGTGTTCTGTTTGCCTGGCAGAGTTCAAGCCAGATGCCGAGATAAACCAGCTGCCTTGTG
JMFN003N11-           AGTGTTCTGTTTGCCTGGCAGAGTTCAAGCCAGATGCCGAGATAAACCAGCTGCCTTGTG
rJMSF052J03+          AGTGTTCTGTTTGCCTGGCAGAGTTCAAGCCAGATGCCGAGATAAACCAGCTGCCTTGTG
                      ____________________________________________________________
consensus             AGTGTTCTGTTTGCCTGGCAGAGTTCAAGCCAGATGCCGAGATAAACCAGCTGCCTTGTG
 
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rJMSF020B19+          GGCACGTTTTCCACACGACCTGCCTCGAGAAGTGGCTCAAGTANTGGAACGTCACCTGCC
rJMSF019B19+          GGCACGTTTTCCACACGACCTGCCTCGAGAAGTGGCTCAAGTACTGGAACGTCACCTGCC
JMSF052J03-           GGCACGTTTTCCACACGGCCTGCCTCGAGAAGTGGCTCAAGTACTGGAACGTCACCTGCC
JMFN003N11-           GGCACGTTTTCCACACGGCCTGCCTCGAGAAGTGGCTCAAGTACTGGAACGTCACCTGCC
rJMSF052J03+          GGCACGTTTTCCACACGGCCTGCCTCGAGAAGTGGCTCAAGTACTGGAACGTCACCTGCC
                      ____________________________________________________________
consensus             GGCACGTTTTCCACACGGCCTGCCTCGAGAAGTGGCTCAAGTACTGGAACGTCACCTGCC
 
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rJMSF020B19+          CGCTTNGCAGGAACTACATGATCNCGCAAGGAGAGGACGATGGTTGCCCAATGTGAGTCA
rJMSF019B19+          CGCTTTGCAGGAACTACATGATCCCGCAAGGAGAGGACGATGGTTGCCCAATGTGAGTCA
JMSF052J03-           CGCTTTGCAGGAACTACATGATCCC                                   
JMFN003N11-           CGCTTTGCAGGAACTACATGATCCCGCAAGGAGAGGACGATGGTTGCCCAATGTGAGTCA
rJMSF052J03+          CGCTTTGCAGGAACTACATGATCCCGCAAGGAGAGGACGATGGTTGCCCAATGTGAGTCA
                      ____________________________________________________________
consensus             CGCTTTGCAGGAACTACATGATCCCGCAAGGAGAGGACGATGGTTGCCCAATGTGAGTCA
 
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rJMSF020B19+          TTAGATGTTTGCGAGACCCGAGACGAAACCCCT                           
rJMSF019B19+          TTAGATGTTTGCGAGAACCGAGACGAAACCCCTCGTTTGTACAGCTTAGTCGTCTTCAGA
JMFN003N11-           TTA                                                         
rJMSF052J03+          TTAGATGTTTGCGAGAACCGAGACGAAACCCCTCGTTTGTACAGCTTAGTCGTCTTCAGA
                      ____________________________________________________________
consensus             TTAGATGTTTGCGAGAACCGAGACGAAACCCCTCGTTTGTACAGCTTAGTCGTCTTCAGA
 
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rJMSF019B19+          CCGAGCATTGCTCGGGCTGTTAAGACACCACGTCGTAGTTGTATACCTATGTTCATCAGG
rJMSF052J03+          CCGAGCATTGCTCGGGCTGTTAAGACACCACGTCGTAGTTGTATACCTATGTTCATCAGG
                      ____________________________________________________________
consensus             CCGAGCATTGCTCGGGCTGTTAAGACACCACGTCGTAGTTGTATACCTATGTTCATCAGG
 
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rJMSF019B19+          CAATGTTTGCGTCCTCTAGCAGCGA                                   
rJMSF052J03+          CAATGTTTGCGTCCTCTAGCAGCGAGCGGGTACCTCGTGACCAATATACATTGCTGTACA
                      ____________________________________________________________
consensus             CAATGTTTGCGTCCTCTAGCAGCGAGCGGGTACCTCGTGACCAATATACATTGCTGTACA