Contig 011443:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF052G24+                                                      TATCATTAGCTTCNAT
                      ____________________________________________________________
consensus                                                         TATCATTAGCTTCNAT
 
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rJMSF052G24+          GCATTTGCTTCCCAGGTTTAATGGTATTGAGCCACCTGAGAATATGCCAAGGTGTATAAA
                      ____________________________________________________________
consensus             GCATTTGCTTCCCAGGTTTAATGGTATTGAGCCACCTGAGAATATGCCAAGGTGTATAAA
 
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rJMSF052G24+          TAATTTGCTACAGTTTGGAAATTTTTTGGAAAAATTGGCATGCATCCTTTAACAAATGGC
                      ____________________________________________________________
consensus             TAATTTGCTACAGTTTGGAAATTTTTTGGAAAAATTGGCATGCATCCTTTAACAAATGGC
 
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rJMSF043M11+                                         TTCTGGTAGGAAGTTGCTAAATGTGTGGG
rJMSF052G24+          TCGTCAGATACATGTATATTCCTCTTGGGGGTTCTGGTAGGAAGTTGCTAAATGTGTGGG
                      ____________________________________________________________
consensus             TCGTCAGATACATGTATATTCCTCTTGGGGGTTCTGGTAGGAAGTTGCTAAATGTGTGGG
 
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rJMSF043M11+          TGGTCTTCACATTTGTTGCTATCTGGCATGATTTAGAGTGGAAGCTGCTTTCGTGGGCAT
rJMSF052G24+          TGGTCTTCACATTTGTTGCTATCTGGCATGATTTAGAGTGGAAGCTGCTTTCGTGGGCAT
                      ____________________________________________________________
consensus             TGGTCTTCACATTTGTTGCTATCTGGCATGATTTAGAGTGGAAGCTGCTTTCGTGGGCAT
 
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rJMSF043M11+          GGCTGACATGCATATTCTTCATACCAGAAATGATTGTAAAATCAACAGCAAATGCTTTCA
rJMSF052G24+          GGCTGACATGCATATTCTTCATACCAGAAATGATTGTAAAATCAACAGCAAATGCTTTCA
                      ____________________________________________________________
consensus             GGCTGACATGCATATTCTTCATACCAGAAATGATTGTAAAATCAACAGCAAATGCTTTCA
 
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rJMSF043M11+          AGGTGGAAAGTGCTTTTGGCGAGTTCTTCTACTATGAACTCAATGCTGTTGCTGGTGCTG
rJMSF052G24+          AGGTGGAAAGTGCTTTTGGCGAGTTCTTCTACTATGAACTCAATGCTGTTGCTGGTGCTG
                      ____________________________________________________________
consensus             AGGTGGAAAGTGCTTTTGGCGAGTTCTTCTACTATGAACTCAATGCTGTTGCTGGTGCTG
 
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rJMSF043M11+          TCACCATCACTTGTCTTATGGTGGCCAATCTTGTTGGTTTTGTGATAGGACCATCAGGGA
rJMSF052G24+          TCACCATCACTTGTCTTATGGTGGCCAATCTTGTTGGTTTTGTGATAGGACCATCAGGGA
                      ____________________________________________________________
consensus             TCACCATCACTTGTCTTATGGTGGCCAATCTTGTTGGTTTTGTGATAGGACCATCAGGGA
 
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rJMSF043M11+          TTAACTGGCTAACATCTGCGTTCCTTCAGAAGGAAGGACTGCCGGTTCTATTTGGCATGT
rJMSF052G24+          TTAACTGGCTAACATCTGCGTTCCTTCAGAAAGAAGGACTGCCGGTTCTATTTGGCATGT
                      ____________________________________________________________
consensus             TTAACTGGCTAACATCTGCGTTCCTTCAGAAGGAAGGACTGCCGGTTCTATTTGGCATGT
 
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rJMSF043M11+          TTGTAACATTTTATGTTGGTACTAAGCTTATGTTACATATCTCTGACTCGAAGAAAAGGA
rJMSF052G24+          TTGTAACATTTTATGTTGGTACTAAGCTTATGTTACATATCTCTGACTCGAAGAAAAGGA
                      ____________________________________________________________
consensus             TTGTAACATTTTATGTTGGTACTAAGCTTATGTTACATATCTCTGACTCGAAGAAAAGGA
 
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rJMSF043M11+          GACATGAAAAGTAGTTTACTGAAAGATATGTGCTGCAGTGCATGATATCATAGTGCAGAG
rJMSF052G24+          GACATGAAAAGTAGTTTACTGAAAGATATGTGCTGCAGTGCATGATATCATAGTGCAGAG
                      ____________________________________________________________
consensus             GACATGAAAAGTAGTTTACTGAAAGATATGTGCTGCAGTGCATGATATCATAGTGCAGAG
 
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rJMSF043M11+          GCAGATTGTGAAGAACATTGTTTCTCCAGGTCAGTCCCTCATGATAGAAGAAATTTGTTA
rJMSF052G24+          GCAGATTGTGAAGAACATTGTTTCTCCAGGTCAGTCCCTCATGATAGAAGAAATTTGTTA
                      ____________________________________________________________
consensus             GCAGATTGTGAAGAACATTGTTTCTCCAGGTCAGTCCCTCATGATAGAAGAAATTTGTTA
 
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rJMSF043M11+          ACTTGGTGGAGGCCAGTGTAGCTCAGTTTTATCTGTAGGTTCTATGAACCCACCCGTAAC
rJMSF052G24+          ACTTGGTGGAGGCCAGTGTAGCTCAGTTTTATCTGTAGGTTCTATGAACCCACCCGTAAC
                      ____________________________________________________________
consensus             ACTTGGTGGAGGCCAGTGTAGCTCAGTTTTATCTGTAGGTTCTATGAACCCACCCGTAAC
 
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rJMSF043M11+          GAACACTCTGACTGAAGGTACAATCTCGTTTCAAGACTCATCACCACTATGCATGTATAC
rJMSF052G24+          GAACACTCTGACTGAAGGTACAATCTCGTTTCAAGACTCATCACCACTATGCATGTATAC
                      ____________________________________________________________
consensus             GAACACTCTGACTGAAGGTACAATCTCGTTTCAAGACTCATCACCACTATGCATGTATAC
 
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rJMSF043M11+          CTTATCGTTCTTAGGGATATTCTTTTTGTCTATGGTTTTTGCTTTACCTCGTTAAGAGAT
rJMSF052G24+          CTTATCGTTCTTAGGGATATTCTTTTTGTCTATGGTTTTTGCTTTACCTCGTTAAGAGAT
                      ____________________________________________________________
consensus             CTTATCGTTCTTAGGGATATTCTTTTTGTCTATGGTTTTTGCTTTACCTCGTTAAGAGAT
 
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rJMSF043M11+          AAATCGATAATTTTGGTTTGATACACTGTCCGCAAGAACCTATGGTTGTGCC        
rJMSF052G24+          AAATCGATAATTTTGGTTTGATACACTGTCCGCAAGAACCTATGGTTGTGCCGACAAGTA
                      ____________________________________________________________
consensus             AAATCGATAATTTTGGTTTGATACACTGTCCGCAAGAACCTATGGTTGTGCCGACAAGTA