Contig 011442:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF052F15-                                                   GGTCTCCTCTTCTGCTTGAT
rJMSF052F15+                                                  GGTCTCCTCTTCTGCTTGAT
                      ____________________________________________________________
consensus                                                     GGTCTCCTCTTCTGCTTGAT
 
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JMSF052F15-           CGGTTCATCGTTATCCCACGTCAGTAACATTAAAGTTCATGGCGGCGACTGCGGCTGCGG
rJMSF052F15+          CGGTTCATCGTTATCCCACGTCAGTAACATTAAAGTTCATGGCGGCGACTGCGGCTGCGG
                      ____________________________________________________________
consensus             CGGTTCATCGTTATCCCACGTCAGTAACATTAAAGTTCATGGCGGCGACTGCGGCTGCGG
 
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JMSF052F15-           CGTCGATCTCACTTGTCGGAGCGCTTCCAAAATCTCGCTCACGAACGCCATCCTCTTCTT
rJMSF052F15+          CGTCGATCTCACTTGTCGGAGCGCTTCCAAAATCTCGCTCACGAACGCCATCCTCTTCTT
                      ____________________________________________________________
consensus             CGTCGATCTCACTTGTCGGAGCGCTTCCAAAATCTCGCTCACGAACGCCATCCTCTTCTT
 
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JMSF052F15-           CGAATCCAGCGCGTAGACATAGACACATTTCTCAGCCCAGATTCTCTATTGGATTTCCCG
rJMSF052F15+          CGAATCCAGCGCGTAGACATAGACACATTTCTCAGCCCAGATTCTCTATTGGATTTCCCG
                      ____________________________________________________________
consensus             CGAATCCAGCGCGTAGACATAGACACATTTCTCAGCCCAGATTCTCTATTGGATTTCCCG
 
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JMSF052F15-           GTGGAGAGCCCTGTATCCCAGTATCCAACTCGGTGCCTGATAAAAGTGAAAGGGTGGATT
rJMSF052F15+          GTGGAGAGCCCTGTATCCCAGTATCCAACTCGGTGCCTGATAAAAGTGAAAGGGTGGATT
                      ____________________________________________________________
consensus             GTGGAGAGCCCTGTATCCCAGTATCCAACTCGGTGCCTGATAAAAGTGAAAGGGTGGATT
 
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JMSF052F15-           ATGGATCTCTGCCCATTGATCGGAGAGAGCTTATTTTGTCGTCCATTGGATTGTTAGCAA
rJMSF052F15+          ATGGATCTCTGCCCATTGATCGGAGAGAGCTTATTTTGTCGTCCATTGGATTGTTAGCAA
                      ____________________________________________________________
consensus             ATGGATCTCTGCCCATTGATCGGAGAGAGCTTATTTTGTCGTCCATTGGATTGTTAGCAA
 
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JMSF052F15-           CAGCTGTTTGCGCTACTGGAAGCAATGGAGCTGCCTTGGCATCTGAATTCGTTGACATGC
rJMSF052F15+          CAGCTGTTTGCGCTACTGGAAGCAATGGAGCTGCCTTGGCATCTGAATTCGTTGACATGC
                      ____________________________________________________________
consensus             CAGCTGTTTGCGCTACTGGAAGCAATGGAGCTGCCTTGGCATCTGAATTCGTTGACATGC
 
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JMSF052F15-           CAGCATTGCGGGGAAAGGACTATGGGAAGTCAAAGATGCGTTTTCCTGACTACACTGAAA
rJMSF052F15+          CAGCATTGCGGGGAAAGGACTATGGGAAGTCAAAGATGCGTTTTCCTGACTACACTGAAA
                      ____________________________________________________________
consensus             CAGCATTGCGGGGAAAGGACTATGGGAAGTCAAAGATGCGTTTTCCTGACTACACTGAAA
 
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JMSF052F15-           CAAACTCAGGTCTCCAGTATAAGGTCACCTGTTTTGAAGCATAAATATGGAAATCCCTCG
rJMSF052F15+          CAAACTCAGGTCTCCAGTATAAGGTCACCTGTTTTGAAGCATAAATATGGAAATCCCTCG
                      ____________________________________________________________
consensus             CAAACTCAGGTCTCCAGTATAAGGTCACCTGTTTTGAAGCATAAATATGGAAATCCCTCG
 
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JMSF052F15-           TATGTTTTTTTAGTGTGGCATACTGGCATGAAACTGAACTTGACTCCAGTCTGTCAAAGA
rJMSF052F15+          TATGTTTTTTTAGTGTGGCATACTGGCATGAAACTGAACTTGACTCCAGTCTGTCAAAGA
                      ____________________________________________________________
consensus             TATGTTTTTTTAGTGTGGCATACTGGCATGAAACTGAACTTGACTCCAGTCTGTCAAAGA
 
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JMSF052F15-           ATGCAGGATTTGAGAGTAGGAAGTGGCCCCAATCCGAAGATGGGAGATACAGTAGTGGTT
rJMSF052F15+          ATGCAGGATTTGAGAGTAGGAAGTGGCCCCAATCCGAAGATGGGAGATACAGTAGTGGTT
                      ____________________________________________________________
consensus             ATGCAGGATTTGAGAGTAGGAAGTGGCCCCAATCCGAAGATGGGAGATACAGTAGTGGTT
 
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JMSF052F15-           GACTGGGATGGTTATACTATAGGATATTATGGTCGCATATTTGAAGCCCGTAACAAGTCA
rJMSF052F15+          GACTGGGATGGTTATACTATAGGATATTATGGTCGCATATTTGAAGCCCGTAACAAGTCA
                      ____________________________________________________________
consensus             GACTGGGATGGTTATACTATAGGATATTATGGTCGCATATTTGAAGCCCGTAACAAGTCA
 
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JMSF052F15-           AAAGGTGGATCC                                                
rJMSF052F15+          AAAGGTGGATCCTTTGAGGGGGATGACAAGGACTTCTACAAATTCAGATTAGGATCTCAA
                      ____________________________________________________________
consensus             AAAGGTGGATCCTTTGAGGGGGATGACAAGGACTTCTACAAATTCAGATTAGGATCTCAA
 
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rJMSF052F15+          GAGGTTATTCCTGCATTTGAAGAAGCCCTTACTGGCATGGCTGTGGGTGGCATCAGAAGG
                      ____________________________________________________________
consensus             GAGGTTATTCCTGCATTTGAAGAAGCCCTTACTGGCATGGCTGTGGGTGGCATCAGAAGG
 
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rJMSF052F15+          TTCTATATCTCCACTAATGTTGTAAACAGTGCCTTTTGTTTTCTTTGTTTTAATGATTAT
                      ____________________________________________________________
consensus             TTCTATATCTCCACTAATGTTGTAAACAGTGCCTTTTGTTTTCTTTGTTTTAATGATTAT