| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF011A19 | Sequence | 222 | 011441 (5) | ||||||||
| JMSF043E18 | Sequence | 828 | 011441 (5) | ref|XP_011098150.1| | 1e-169 | PREDICTED: probable solanesyl-diphosphate synthase 3, chloroplastic isoform X1 | 418 | 007211 (4) | emb|CDO97835.1| | 1e-31 | unnamed protein product [Coffea canephora] |
| JMSF050L01 | Sequence | 643 | 011441 (5) | ref|XP_011098151.1| | 5e-131 | PREDICTED: probable solanesyl-diphosphate synthase 3, chloroplastic isoform X2 | 392 | 007211 (4) | emb|CDO97835.1| | 8e-32 | unnamed protein product [Coffea canephora] |
| JMSF052C16 | Sequence | 688 | 011441 (5) | ref|XP_011098150.1| | 2e-64 | PREDICTED: probable solanesyl-diphosphate synthase 3, chloroplastic isoform X1 | 762 | 011441 (5) | ref|XP_010042502.1| | 3e-88 | PREDICTED: solanesyl diphosphate synthase 1-like, partial [Eucalyptus grandis] |
This contig is upended
. : . : . : . : . : . :
JMSF011A19- GGCT
____________________________________________________________
consensus GGCT
. : . : . : . : . : . :
JMSF011A19- TGGCTTTCATTGAATTGTACAGTAGTTCCCTTCTTCCCCAGCTCTTGTTCCTTTGAAGAA
____________________________________________________________
consensus TGGCTTTCATTGAATTGTACAGTAGTTCCCTTCTTCCCCAGCTCTTGTTCCTTTGAAGAA
. : . : . : . : . : . :
JMSF011A19- CGTTCAAATTGGGTAGCTACCGTCGTCCCCGAGTTGGAACTTGCAGTTTTCATCGCCAAA
JMSF052C16- GTTCAAATTGGGTAGCTACCGTCGTCCCCGAGTTGGAACTTGCAGTTTTCATCGCCAAA
____________________________________________________________
consensus CGTTCAAATTGGGTAGCTACCGTCGTCCCCGAGTTGGAACTTGCAGTTTTCATCGCCAAA
. : . : . : . : . : . :
JMSF011A19- GGCTTGAGCTTTGCCGCTCTTCTGTGATGGGTTCCCAGAGATTTTGAAACCCAATAAAGA
JMSF052C16- GGCTTGAGCTTTGCCGCTCTTCTGTGATGGGTTCCCAGAGATTTTGAAACCCAATAAAGA
____________________________________________________________
consensus GGCTTGAGCTTTGCCGCTCTTCTGTGATGGGTTCCCAGAGATTTTGAAACCCAATAAAGA
. : . : . : . : . : . :
JMSF011A19- TTCCGGTGTGGGTTCTTGATATTCCGGCGGGAGACAAA
JMSF052C16- TTCCGGTGTGGGTTCTTGATATTCCGGCGGGAGACAAAGCCTGGTGTGAGCTTTTAAGGA
____________________________________________________________
consensus TTCCGGTGTGGGTTCTTGATATTCCGGCGGGAGACAAAGCCTGGTGTGAGCTTTTAAGGA
. : . : . : . : . : . :
JMSF052C16- ACACTCCTCCGAGGATGATGTCTGCTGCCTACCATAATCTTGAGTTTGGGAGGACGAGGT
____________________________________________________________
consensus ACACTCCTCCGAGGATGATGTCTGCTGCCTACCATAATCTTGAGTTTGGGAGGACGAGGT
. : . : . : . : . : . :
JMSF052C16- TGAACTCTGCGGCTTGCGGCTGTTCCTCGTACTCCTCCATTGACAGGCACTCTGCGAACA
____________________________________________________________
consensus TGAACTCTGCGGCTTGCGGCTGTTCCTCGTACTCCTCCATTGACAGGCACTCTGCGAACA
. : . : . : . : . : . :
JMSF052C16- AATTTCTGCTCAGAAACGTTAAGAAAGGAGGAGGGTTCAGAGCTCGGAGACTGCTGTGTT
____________________________________________________________
consensus AATTTCTGCTCAGAAACGTTAAGAAAGGAGGAGGGTTCAGAGCTCGGAGACTGCTGTGTT
. : . : . : . : . : . :
JMSF052C16- GCCGGCGTGAAATTGGGCGGTGTCATGTGTTCTCCACTAAGGCTCCTGAGAGTTTCCTCA
____________________________________________________________
consensus GCCGGCGTGAAATTGGGCGGTGTCATGTGTTCTCCACTAAGGCTCCTGAGAGTTTCCTCA
. : . : . : . : . : . :
JMSF052C16- ATGGAGTCACACCTGCTTCATCATCTCCAATGTTGGATTTGAAGAAAGACAGTGGAAGCC
JMSF043E18+ AAGAAAGACAGTGGAAGCC
____________________________________________________________
consensus ATGGAGTCACACCTGCTTCATCATCTCCAATGTTGGATTTGAAGAAAGACAGTGGAAGCC
. : . : . : . : . : . :
JMSF052C16- CTATTTCAGTGGCAAGTTTGTTTGAAGTGGTGACTGATGATCTCCTCACACTGAACAAGA
JMSF043E18+ CTATTTCAGTGGCAAGTTTGTTTGAAGTGGTGACTGATGATCTCCTCACACTGAACAAGA
____________________________________________________________
consensus CTATTTCAGTGGCAAGTTTGTTTGAAGTGGTGACTGATGATCTCCTCACACTGAACAAGA
. : . : . : . : . : . :
JMSF052C16- ATTTACAATCTATTGTTGGTGCGGAGAACCCTGTTTTAATGTCTGCCGCTGAGCAGATAT
JMSF043E18+ ATTTACAATCTATTGTTGGTGCGGAGAACCCTGTTTTAATGTCTGCCGCTGAGCAGATAT
____________________________________________________________
consensus ATTTACAATCTATTGTTGGTGCGGAGAACCCTGTTTTAATGTCTGCCGCTGAGCAGATAT
. : . : . : . : . : . :
JMSF052C16- TTAGCGCCGGTGGCAAGAGGATGANGCCCGCTTTAGTTTTCCTTGTTTCCCGAGCAACAG
JMSF043E18+ TTAGCGCCGGTGGCAAGAGGATGAGGCCCGCTTTAGTTTTCCTTGTTTCCCGAGCAACAG
JMSF050L01+ TTCCCGAGCAACAG
____________________________________________________________
consensus TTAGCGCCGGTGGCAAGAGGATGAGGCCCGCTTTAGTTTTCCTTGTTTCCCGAGCAACAG
. : . : . : . : . : . :
JMSF052C16- CAGAAACTGCTGGTCTAACGGAACTCAC
JMSF043E18+ CAGAAACTGCTGGTCTAACGGAACTCACCAAGGAACACAGGCGGCTGGCTGAAATCATCG
JMSF050L01+ CAGAAACTGCTGGTCTAACGGAACTCACCAAGGAACACAGGCGGCTGGCTGAAATCATCG
____________________________________________________________
consensus CAGAAACTGCTGGTCTAACGGAACTCACCAAGGAACACAGGCGGCTGGCTGAAATCATCG
. : . : . : . : . : . :
JMSF043E18+ AAATGATCCACACTGCGAGCCTGATACACGATGACGTGTTGGATGAAAGCGACATGCGAA
JMSF050L01+ AAATGATCCACACTGCGAGCCTGATACACGATGACGTGTTGGATGAAAGCGACATGCGAA
____________________________________________________________
consensus AAATGATCCACACTGCGAGCCTGATACACGATGACGTGTTGGATGAAAGCGACATGCGAA
. : . : . : . : . : . :
JMSF043E18+ GAGGAAAGGAAACCGTTCATCAGATATATGGCACGAGGGTAGCGGTGCTTGCTGGGGATT
JMSF050L01+ GAGGAAAGGAAACCGTTCATCAGATATATGGCACGAGGGTAGCGGTGCTTGCTGGGGATT
____________________________________________________________
consensus GAGGAAAGGAAACCGTTCATCAGATATATGGCACGAGGGTAGCGGTGCTTGCTGGGGATT
. : . : . : . : . : . :
JMSF043E18+ TTATGTTTGCGCAATCTTCATGGTACCTAGCTAACCTCGAAAACATTGAAGTCATAAAGC
JMSF050L01+ TTATGTTTGCGCAATCTTCATGGTACCTAGCTAACCTCGAAAACATTGAAGTCATAAAGC
rJMSF052C16+ CATGGTACCTAGCTAACCTNGAAAACATTGAAGTCATAAAGC
____________________________________________________________
consensus TTATGTTTGCGCAATCTTCATGGTACCTAGCTAACCTCGAAAACATTGAAGTCATAAAGC
. : . : . : . : . : . :
JMSF043E18+ TCATAAGTCAGGTCATAAAAGACTTTGCTAGTGGCGAAATAAAGCAGGCGTCGAGTTTAT
JMSF050L01+ TCATAAGTCAGGTCATAAAAGACTTTGCTAGTGGCGAAATAAAGCAGGCGTCGAGTTTAT
rJMSF052C16+ TCATAAGTCAGGTCATNAAAGACTTTGCTAGTGGCGAAATAAAGCAGGCGTCGAGTTTAT
____________________________________________________________
consensus TCATAAGTCAGGTCATAAAAGACTTTGCTAGTGGCGAAATAAAGCAGGCGTCGAGTTTAT
. : . : . : . : . : . :
JMSF043E18+ TCGACTGTGATGTCGGGATGGAGGATTACTTAATCAAGAGCTACTACAAAACGGCCTCGT
JMSF050L01+ TCGACTGTGATGTCGGGATGGAGGATTACTTAATCAAGAGCTACTACAAAACGGCCTCGT
rJMSF052C16+ TCGACTGTGATGTCGGGATGGAGGATTACTTAATCAAGAGNTACTNCAAAACGGCCTCGT
____________________________________________________________
consensus TCGACTGTGATGTCGGGATGGAGGATTACTTAATCAAGAGCTACTACAAAACGGCCTCGT
. : . : . : . : . : . :
JMSF043E18+ TGATCGCTGCAAGCACCAAGGGGGCCGCCATTTTCAGCGGGGTCGACAGCGGGATCAGTG
JMSF050L01+ TGATCGCTGCAAGCACCAAGGGGGCCGCCATTTTCAGCGGGGTCGACAGCGGGATCAGTG
rJMSF052C16+ TGATNGCTGCAAGCACCAAGGGGGCCGCCNTTTTCAGCGGGGTNGACAGCGGGATCAGTG
____________________________________________________________
consensus TGATCGCTGCAAGCACCAAGGGGGCCGCCATTTTCAGCGGGGTCGACAGCGGGATCAGTG
. : . : . : . : . : . :
JMSF043E18+ AGCAGATGTATCAATACGGGAGGAACCTCGGTCTATCGTTCCAGATCGTGGACGACATTC
JMSF050L01+ AGCAGATGTATCAATACGGGAGGAACCTCGGTCTATCGTTCCAGATCGTGGACGACATTC
rJMSF052C16+ AGCAGATGTATCAATACGGGAGGAACCTCGGTCTATCGTTCCAGATCGTGGNCGACATTN
____________________________________________________________
consensus AGCAGATGTATCAATACGGGAGGAACCTCGGTCTATCGTTCCAGATCGTGGACGACATTC
. : . : . : . : . : . :
JMSF043E18+ TCGACTTCACTCAATCGGCCGAGCAGCTTGGGAAGCCAGCCGGGAGCGACCTGGCGAAGG
JMSF050L01+ TCGACTTCACTCAATCGGCCGAGCAGCTTGGGAAGCCAGCCGGGAGCGACCTGGCGAAGG
rJMSF052C16+ TTGACTTCACTCAATCGGCCGAGCAGCTTGGGAAGCCAGCCGGGAGCGACCTGGCGAAGG
____________________________________________________________
consensus TCGACTTCACTCAATCGGCCGAGCAGCTTGGGAAGCCAGCCGGGAGCGACCTGGCGAAGG
. : . : . : . : . : . :
JMSF043E18+ GCAACCTGACAGCGCCGGTGATATTCGCGCTGGAAACCGAGCCGAAACTGAGGGACATAA
JMSF050L01+ GCAACCTGACAGCGCCGGTGATATTCGCGCTGGAAACCGAGCCGAAACTGAGGGACATAA
rJMSF052C16+ GCAACCTGACAGCGCCGGTGATATTCGCGCTGGAAACCGAGCCGAAACTGAGGGACATAA
____________________________________________________________
consensus GCAACCTGACAGCGCCGGTGATATTCGCGCTGGAAACCGAGCCGAAACTGAGGGACATAA
. : . : . : . : . : . :
JMSF043E18+ TCGAATCCGAATTCTGCGAGGCGGGCGCT
JMSF050L01+ TCGAATCCGAATTCTGCGAGGCGGGCGCT
rJMSF052C16+ TNGAATNCGAATTTTGCGAGGCGGGCGCTCTCGAGGAAGCCNTTGGCATNGTGAAGAGGT
____________________________________________________________
consensus TCGAATCCGAATTCTGCGAGGCGGGCGCTCTCGAGGAAGCCNTTGGCATNGTGAAGAGGT
. : . : . : . : . : . :
rJMSF052C16+ GCGGGGGCATCGCGAGAGCCGAGGAGCTGGCGAAAGAGAAAGCTGATATNGCAATTCAGA
____________________________________________________________
consensus GCGGGGGCATCGCGAGAGCCGAGGAGCTGGCGAAAGAGAAAGCTGATATNGCAATTCAGA
. : . : . : . : . : . :
rJMSF052C16+ ACCTCGAGTGCTTGCCCCCCAGCCCTTTCCGGGTCGCTNTCGAGGAAATGGTGCAGTATA
____________________________________________________________
consensus ACCTCGAGTGCTTGCCCCCCAGCCCTTTCCGGGTCGCTNTCGAGGAAATGGTGCAGTATA
. : . : . : . : . : . :
rJMSF052C16+ ATCTTGAAAGAGTTAAGTNGAATTGAAGAAGAAGAAGAAGAAGAACNCNGAATTTGGATC
____________________________________________________________
consensus ATCTTGAAAGAGTTAAGTNGAATTGAAGAAGAAGAAGAAGAAGAACNCNGAATTTGGATC
. : . : . : . : . : . :
rJMSF052C16+ AAAGCNCAGCTNTCTCAGCTACNCTGTTCTTGTAAAACNTTCAGTTTTACCCTTGCATAT
____________________________________________________________
consensus AAAGCNCAGCTNTCTCAGCTACNCTGTTCTTGTAAAACNTTCAGTTTTACCCTTGCATAT
. : . : . : . : . : . :
rJMSF052C16+ AGTAGTGCCNTTGATTTTCAGTGTTTGTATACTCATAAAAGCCCNGAAGCAATGACTTTT
____________________________________________________________
consensus AGTAGTGCCNTTGATTTTCAGTGTTTGTATACTCATAAAAGCCCNGAAGCAATGACTTTT