Contig 011440:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF052B16Sequence700011440 (2)ref|XP_009777643.1|236PREDICTED: uncharacterized protein LOC104227169 [Nicotiana sylvestris]928011440 (2)gb|KDO85072.1|2e-132hypothetical protein CISIN_1g019961mg [Citrus sinensis]

Alignment

This contig is upended


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JMSF052B16-                              GATGGAGATAGAAGAAGAAGGGTTTTAGCCGGCAACAAAGA
                      ____________________________________________________________
consensus                                GATGGAGATAGAAGAAGAAGGGTTTTAGCCGGCAACAAAGA
 
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JMSF052B16-           ACAAATAATTCTCTATAAATTCCAAGCAATTTTGAAAATGTCTTCGTTAACGTTGAAGCC
                      ____________________________________________________________
consensus             ACAAATAATTCTCTATAAATTCCAAGCAATTTTGAAAATGTCTTCGTTAACGTTGAAGCC
 
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JMSF052B16-           ATTCTTCCTATTACAATCTCGACGTTCTTCGTCTTCGTCTTCCTCGACTTCTTCATCACC
                      ____________________________________________________________
consensus             ATTCTTCCTATTACAATCTCGACGTTCTTCGTCTTCGTCTTCCTCGACTTCTTCATCACC
 
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JMSF052B16-           TCCGGCTCTCGTTTCGTGCCGGAAAACTCCACTCTTTCCTTCGACTAGCATCTCCGGGAG
                      ____________________________________________________________
consensus             TCCGGCTCTCGTTTCGTGCCGGAAAACTCCACTCTTTCCTTCGACTAGCATCTCCGGGAG
 
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JMSF052B16-           AACCAGTGGCCGGGGAGGGTTCGTTGTCAGAGCTCAATCTTTCGATAGCTCCGAGACTGA
                      ____________________________________________________________
consensus             AACCAGTGGCCGGGGAGGGTTCGTTGTCAGAGCTCAATCTTTCGATAGCTCCGAGACTGA
 
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JMSF052B16-           CGGCAAGGACGCCGATAAAAACGATCCTAATGCCGCCGATTACAAACCTCCCAACGGCAC
                      ____________________________________________________________
consensus             CGGCAAGGACGCCGATAAAAACGATCCTAATGCCGCCGATTACAAACCTCCCAACGGCAC
 
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JMSF052B16-           TTTGCATAAGAACAGGAGGGATATTTTGCTGGAGTATGTCCAAAATGTGCAGCCTGATTT
                      ____________________________________________________________
consensus             TTTGCATAAGAACAGGAGGGATATTTTGCTGGAGTATGTCCAAAATGTGCAGCCTGATTT
 
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JMSF052B16-           TATGGAACTCTTCATCAAAAGAGCGCCTCAACAGGTAGTGGATGCGATGCGCCAAACAGT
                      ____________________________________________________________
consensus             TATGGAACTCTTCATCAAAAGAGCGCCTCAACAGGTAGTGGATGCGATGCGCCAAACAGT
 
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JMSF052B16-           GACAAATATGATGGGAACACTGCCACCTCAATTTTTTGCAGTCACAGTAACCACTGTTGC
rJMSF052B16+            CAAATATGATGGGAACACTGCCACCTCAATTTTTTGCAGTCACAGTAACCACTGTTGC
                      ____________________________________________________________
consensus             GACAAATATGATGGGAACACTGCCACCTCAATTTTTTGCAGTCACAGTAACCACTGTTGC
 
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JMSF052B16-           TGAAAATCTTGCTCAGCTTATGTATAGCGTTATGATGACAGGATATATGTTCCGAAATGC
rJMSF052B16+          TGAAAATCTTGCTCAGCTTATGTATAGCGTTATGATGACAGGATATATGTTCCGAAATGC
                      ____________________________________________________________
consensus             TGAAAATCTTGCTCAGCTTATGTATAGCGTTATGATGACAGGATATATGTTCCGAAATGC
 
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JMSF052B16-           ACAGTTCCGGTTGGAGATGCAACAAAGCTTGCAACTGGCTGCTCTTCCTAACCCTGAAAC
rJMSF052B16+          ACAGTTCCGGTTGGAGATGCAACAAAGCTTGCAACTGGCTGCTCTTCCTAACCCTGAAAC
                      ____________________________________________________________
consensus             ACAGTTCCGGTTGGAGATGCAACAAAGCTTGCAACTGGCTGCTCTTCCTAACCCTGAAAC
 
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JMSF052B16-           ACAGGAGAAAACTGATTTACCTGATTATGCACCAGGTACACAGAAAAAGGTCACTGGTG 
rJMSF052B16+          ACAGGAGAAAACTGATTTACCTGATTATGCACCAGGTACACAGAAAAAGGTCACTGGTGA
                      ____________________________________________________________
consensus             ACAGGAGAAAACTGATTTACCTGATTATGCACCAGGTACACAGAAAAAGGTCACTGGTGA
 
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rJMSF052B16+          AGTTATTAGGTGGAATAACGTTTCTGGTCCTGAAAAAATAGATGCAGTGAAATACATTGA
                      ____________________________________________________________
consensus             AGTTATTAGGTGGAATAACGTTTCTGGTCCTGAAAAAATAGATGCAGTGAAATACATTGA
 
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rJMSF052B16+          GTTACTTGAAGCAGAAGTTGAAGAATTGACTCGTCAAATAGAGAGGAAATCTGCTAATGG
                      ____________________________________________________________
consensus             GTTACTTGAAGCAGAAGTTGAAGAATTGACTCGTCAAATAGAGAGGAAATCTGCTAATGG
 
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rJMSF052B16+          ACAGAATGAATTGCTTGAATATCTAAAGACTCTTGAACCTCAAAACCTGAAGGAGCTAAC
                      ____________________________________________________________
consensus             ACAGAATGAATTGCTTGAATATCTAAAGACTCTTGAACCTCAAAACCTGAAGGAGCTAAC
 
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rJMSF052B16+          TAGTACTGCCGGTGAAGATGTTGTGCTAGCGATGAACACATTTATAAAACGCCTCTTAGT
                      ____________________________________________________________
consensus             TAGTACTGCCGGTGAAGATGTTGTGCTAGCGATGAACACATTTATAAAACGCCTCTTAGT
 
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rJMSF052B16+          AGTTTCAGATCCTAGTCAGATGAAGACGAGTGTAACAGAGACGAGTGTTCCAGAACTTGC
                      ____________________________________________________________
consensus             AGTTTCAGATCCTAGTCAGATGAAGACGAGTGTAACAGAGACGAGTGTTCCAGAACTTGC
 
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rJMSF052B16+          AAAGCTCCTTTACTGGCTCATGGTAGTTGGTTATAGCATTCGCAACATTGAAGTCCGCTT
                      ____________________________________________________________
consensus             AAAGCTCCTTTACTGGCTCATGGTAGTTGGTTATAGCATTCGCAACATTGAAGTCCGCTT
 
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rJMSF052B16+          TGATATGGAACGGGTGCTTGGCACTCCACCAAAGCTTGCAGAGCTACCTCCTGGTGAAAA
                      ____________________________________________________________
consensus             TGATATGGAACGGGTGCTTGGCACTCCACCAAAGCTTGCAGAGCTACCTCCTGGTGAAAA
 
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rJMSF052B16+          TATTTAGCTGCCCACACGAGTTTCTACACAGAGTCTTTGGTTTTTGTTGGTGCAAGATTT
                      ____________________________________________________________
consensus             TATTTAGCTGCCCACACGAGTTTCTACACAGAGTCTTTGGTTTTTGTTGGTGCAAGATTT
 
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rJMSF052B16+          ATAATACCATTAAAAGAAAATAGTCTTTATGGTGAGTTTTAGAATGCTGTTTCACATGTT
                      ____________________________________________________________
consensus             ATAATACCATTAAAAGAAAATAGTCTTTATGGTGAGTTTTAGAATGCTGTTTCACATGTT
 
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rJMSF052B16+          TTTCACTCTTAGAACAGCTTGCCCAGAAGTTAAAGACGTTCCCACAGGAGTAACACTTCT
                      ____________________________________________________________
consensus             TTTCACTCTTAGAACAGCTTGCCCAGAAGTTAAAGACGTTCCCACAGGAGTAACACTTCT
 
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rJMSF052B16+          CCCTATTGTTTTTATTTTCATTACTCTTGTATGCTAAAGCTGCACTCATAGTTTGCTGCT
                      ____________________________________________________________
consensus             CCCTATTGTTTTTATTTTCATTACTCTTGTATGCTAAAGCTGCACTCATAGTTTGCTGCT