Contig 011437:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009N17Sequence541011992 (6)681011437 (4)ref|XP_009620200.1|2e-120PREDICTED: RNA pseudouridine synthase 3, mitochondrial [Nicotiana tomentosiform
JMFF027J12Sequence537011992 (6)661011437 (4)ref|XP_009620200.1|1e-118PREDICTED: RNA pseudouridine synthase 3, mitochondrial [Nicotiana tomentosiform
JMFF036K07Sequence598011992 (6)521011437 (4)ref|XP_009620200.1|7e-94PREDICTED: RNA pseudouridine synthase 3, mitochondrial [Nicotiana tomentosiform
JMSF051D02Sequence628011992 (6)734011437 (4)ref|XP_009620200.1|9e-138PREDICTED: RNA pseudouridine synthase 3, mitochondrial [Nicotiana tomentosiform

Alignment

This contig is upended


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rJMSF051D02+                                                        AACAGAGGAAAGCA
                      ____________________________________________________________
consensus                                                           AACAGAGGAAAGCA
 
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rJMFF027J12+                                        TAAAGAAGAAGAAATTTCAATCNCAGGCAT
rJMFF009N17+                                               GAAGAAATTTCAATCTCAGGCAT
rJMSF051D02+          TCTCCCTTCTTCATTTGGTTCTCAGTGACTTAAAGAAGAAGAAATTTCAATCACAGGCAT
                      ____________________________________________________________
consensus             TCTCCCTTCTTCATTTGGTTCTCAGTGACTTAAAGAAGAAGAAATTTCAATCTCAGGCAT
 
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rJMFF027J12+          GGGANGATTCTTGTAAGGTAACATATCGGAGATATTGGGCATTAGTAATAGGTTCCCCCA
rJMFF009N17+          GGGANGATTNTTGTAAGGTAACATATCGGAGATATTGGGCATTAGTNATAGGTTCCCCCA
rJMSF051D02+          GGGATGATTCTTGTAAGGTAACATATCGGAGATATTGGGCATTAGTAATAGGTTCCCCCA
                      ____________________________________________________________
consensus             GGGATGATTCTTGTAAGGTAACATATCGGAGATATTGGGCATTAGTAATAGGTTCCCCCA
 
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rJMFF027J12+          AAGAAAAGGAAGGCTTAATTTGTGCACCTCTTTCAAAGGTGGTTCTTGATAATGGGAAAN
rJMFF036K07+                                                            AATGGGAAAA
rJMFF009N17+          AAGAAAAGGAAGGCTTAATTTGTGCACCTCTTTCANAGGTGGTTNTTGATAATGGGAAAA
rJMSF051D02+          AAGAAAAGGAAGGCTTAATTTGTGCACCTCTTTCAAAGGTGGTTCTTGATAATGGGAAAA
                      ____________________________________________________________
consensus             AAGAAAAGGAAGGCTTAATTTGTGCACCTCTTTCAAAGGTGGTTCTTGATAATGGGAAAA
 
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rJMFF027J12+          CCGAAAGGGTTATNTTGGCTCAGAACTCAAGGTTAGAAGCTTCCCAGGATGCTGTTACAG
rJMFF036K07+          CCGAAAGGGTTATNTTGGCTCAGNNCTCAAGGTTAGAAGCTTCCCAGGATGCTGTTACAG
rJMFF009N17+          CCGAAAGGGTTATCTTGGCTCAGAACTCAAGGTTAGAAGCTTCCCAGGATGCTGTTACAG
rJMSF051D02+          CCGAAAGGGTTATCTTGGCTCAGAACTCAAGGTTAGAAGCTTCCCAGGATGCTGTTACAG
                      ____________________________________________________________
consensus             CCGAAAGGGTTATCTTGGCTCAGAACTCAAGGTTAGAAGCTTCCCAGGATGCTGTTACAG
 
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rJMFF027J12+          AATATCGTGTGNTGGGTCCTATGATCAATGGATGTTCGTGGATAGAATTGCGCCCGCATA
rJMFF036K07+          AATATCGTGTGTTGGGTCCTANGATCAATGGATGTTCGTGGATAGAATTGCGCCCGCATA
rJMFF009N17+          AATATCGTGTGNTGGGTCCTATGATCAATGGATGTTCGTGGATAGAATTGCGCCCGCATA
rJMSF051D02+          AATATCGTGTGCTGGGTCCTATGATCAATGGATGTTCGTGGATAGAATTGCGCCCGCATG
                      ____________________________________________________________
consensus             AATATCGTGTGTTGGGTCCTATGATCAATGGATGTTCGTGGATAGAATTGCGCCCGCATA
 
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rJMFF027J12+          CAAGCAGAAAGCATCAGCTCCGTGTGCACTGTGCAGAAGCGCTTGGTACTCCAATTGTGG
rJMFF036K07+          CAAGCAGAAAGCATCAGCTCCGTGTGCACTGTGCAGAAGCGCTTGGTACTCCAATTGTGG
rJMFF009N17+          CAAGCAGAAAGCATCAGCTCCGTGTGCACTGTGCAGAAGCGCTTGGTACTCCAATTGTGG
rJMSF051D02+          CAAGCAGAAAGCATCAGCTCCGTGTGCACTGTGCAGAAGCGCTTGGTACTCCAATTGTGG
                      ____________________________________________________________
consensus             CAAGCAGAAAGCATCAGCTCCGTGTGCACTGTGCAGAAGCGCTTGGTACTCCAATTGTGG
 
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rJMFF027J12+          GTGATTACAAGTACGGTTGGTTCGTTCATAAGAAGTGGAAGCAGATGCCCCGGGTTGATA
rJMFF036K07+          GTGATTACAAGTACGGTTGGTTCGTTCATAAGAAGTGGAAGCAGATGCCCCGGGTTGATA
rJMFF009N17+          GTGATTACAAGTACGGTTGGTTCGTTCATAAGAAGTGGAAGCAGATGCCCCGGGTTGATA
rJMSF051D02+          GTGATTACAAGTACGGTTGGTTCGTTCATAAGAAGTGGAAGCAGATGCCCCGGGTTGATA
                      ____________________________________________________________
consensus             GTGATTACAAGTACGGTTGGTTCGTTCATAAGAAGTGGAAGCAGATGCCCCGGGTTGATA
 
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rJMFF027J12+          TTGAGCCCACAACCGGGGAACCATACAGAATGCGAAGGCCAGAAGGGTTGGATGTTCAGA
rJMFF036K07+          TTGAGCCCACAACCGGGGAACCATACAGAATGCGAAGGCCAGAAGGGTTGGATGTTCAGA
rJMFF009N17+          TTGAGCCCACAACCGGGGAACCATACAGAATGCGAAGGCCAGAAGGGTTGGATGTTCAGA
rJMSF051D02+          TTGAGCCCACAACCGGGGAACCATACAGAATGCGAAGGCCAGAAGGGTTGGATGTTCAGA
                      ____________________________________________________________
consensus             TTGAGCCCACAACCGGGGAACCATACAGAATGCGAAGGCCAGAAGGGTTGGATGTTCAGA
 
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rJMFF027J12+          AAGGAAGCGTGTTGTCAAAGGTTCCCTTGNTGCATCTGCATTGCCGGGAGCTTGTACTTC
rJMFF036K07+          AAGGAAGCGTGTTGTCAAAGGTTCCCTTGTTGCATNTGCATTGCCGGGAGCTTGTACTTC
rJMFF009N17+          AAGGAAGCGTGTTGTCAAAGGTTCCCTTGNTGCATCTGCATTGCCGGGAGCTTGTACTTC
rJMSF051D02+          AAGGAAGCGTGTTGTCAAAGGTTCCCTTGCTGCATCTGCATTGCCGGGAGCTTGTACTTC
                      ____________________________________________________________
consensus             AAGGAAGCGTGTTGTCAAAGGTTCCCTTGTTGCATCTGCATTGCCGGGAGCTTGTACTTC
 
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rJMFF027J12+          CAAACATTGCCAAGTTTCTTGAGNTTCATAGTAATAGTAATAGGTCAAGGAATTATAATG
rJMFF036K07+          CAAACATTGCCAAGTTTCTTGAGNTTCATAGTAATAGTAATAGGTCAAGGAATTATAATG
rJMFF009N17+          CAAACATTGCCAAGTTTCTTGAGNTTCATAGTAATAGTAATAGGTCAAGGAATTATAATG
rJMSF051D02+          CAAACATTGCCAAGTTTCTTGAGCTTCATAGTAATAGTAATAGGTCAAGGAATTATAATG
                      ____________________________________________________________
consensus             CAAACATTGCCAAGTTTCTTGAGCTTCATAGTAATAGTAATAGGTCAAGGAATTATAATG
 
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rJMFF027J12+          TGAAGAGTGATACTGTATCAAAACCAGATCTCCTTCGGNTTGTAGCTCCAATGCCATCTC
rJMFF036K07+          TGAAGAGTGATNCTGTATCAAAACCAGATCTCCTTNGGTTTGTAGCTCCAATGCCATCTC
rJMFF009N17+          TGAAGAGTGATNCTGTATCAAAACCAGATCTCCTTCGGNTTGTAGCTCCAATGCCATCTC
rJMSF051D02+          TGAAGAGTGATACTGTATCAAAACCAGATCTCCTTCGGTTTGTAGCTCCAATGCCATCTC
                      ____________________________________________________________
consensus             TGAAGAGTGATACTGTATCAAAACCAGATCTCCTTCGGTTTGTAGCTCCAATGCCATCTC
 
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rJMFF027J12+          ACATGAAAANTAGTTGGAATCTCATGTC                                
rJMFF036K07+          ACATGAAAANTAGTTGGAATCTCATGTCCTC                             
rJMFF009N17+          ACATGAAAANTAGTTGGAATCTCATGTCCTCTTACCTAATA                   
rJMSF051D02+          ACATGAAAATTAGTTGGAATCTCATGTCCTCTTACTTAATATGAAAACGAAAGAAGAAAT
                      ____________________________________________________________
consensus             ACATGAAAATTAGTTGGAATCTCATGTCCTCTTACTTAATATGAAAACGAAAGAAGAAAT