clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF046O14 | Sequence | 597 | 011431 (2) | ref|XP_010318270.1| | 4e-93 | PREDICTED: serine/threonine-protein kinase TIO isoform X1 [Solanum lycopersicum | |||||
JMSF049D20 | Sequence | 701 | 024290 | gb|KDO81255.1| | 9e-115 | hypothetical protein CISIN_1g0007061mg, partial [Citrus sinensis] gb|KDO81256.1| | 806 | 011431 (2) | ref|XP_009617966.1| | 2e-125 | PREDICTED: serine/threonine-protein kinase TIO [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
rJMSF049D20+ AGAGAAGTCATAGTCGATGTTCTCAT
____________________________________________________________
consensus AGAGAAGTCATAGTCGATGTTCTCAT
. : . : . : . : . : . :
rJMSF049D20+ GATGTTTCAGATTTAGCTCGCATGGACAAGGTTTTTCTATGAATACATCGATGCAGCAGA
____________________________________________________________
consensus GATGTTTCAGATTTAGCTCGCATGGACAAGGTTTTTCTATGAATACATCGATGCAGCAGA
. : . : . : . : . : . :
rJMSF049D20+ TATAGTGGAATTTCTCAAGGAATTTTTGACCCACGAAGATCCCAATGTTCGTGCAAAGGC
____________________________________________________________
consensus TATAGTGGAATTTCTCAAGGAATTTTTGACCCACGAAGATCCCAATGTTCGTGCAAAGGC
. : . : . : . : . : . :
rJMSF046O14+ AA
rJMSF049D20+ ATGCAGTGCCATTGGGAATATGTGTCGGCATAGCTCCTATTTCTATGATGTACTGGGAAA
____________________________________________________________
consensus ATGCAGTGCCATTGGGAATATGTGTCGGCATAGCTCCTATTTCTATGATGTACTGGGAAA
. : . : . : . : . : . :
rJMSF046O14+ ACATCAAATCATTAGTCTCCTCATAGACAGATGCGCTGATTCTGACAAAAGAACACAGAA
rJMSF049D20+ ACATCAAATCATTAGTCTCCTCATAGACAGATGCGCTGATTCTGACAAAAGAACACAGAA
____________________________________________________________
consensus ACATCAAATCATTAGTCTCCTCATAGACAGATGCGCTGATTCTGACAAAAGAACACAGAA
. : . : . : . : . : . :
rJMSF046O14+ ATNTGCTTGCTTTGCCATTGGCAATGCTGCCTATCATAGTGACTTGTTGTACGATGAGTT
rJMSF049D20+ ATTTGCTTGCTTTGCCATTGGCAATGCTGCCTATCATAGTGACTTGTTGTACGATGAGTT
____________________________________________________________
consensus ATTTGCTTGCTTTGCCATTGGCAATGCTGCCTATCATAGTGACTTGTTGTACGATGAGTT
. : . : . : . : . : . :
rJMSF046O14+ GAGACGAGCAATACCTCAGCTTTCTTATTTACTTCTTTCGGCTGAGGAGGACAAAACCAA
rJMSF049D20+ GAGACGAGCAATACCTCAGCTTTCTTATTTACTTCTTTCGGCTGAGGAGGACAAAACCAA
____________________________________________________________
consensus GAGACGAGCAATACCTCAGCTTTCTTATTTACTTCTTTCGGCTGAGGAGGACAAAACCAA
. : . : . : . : . : . :
rJMSF046O14+ GGCTAATGCTGCTGGTGCACTCAGCAATCTTGTCCGCAACTCCAACAAGCTCTGCGAAGA
rJMSF049D20+ GGCTAATGCTGCTGGTGCACTCAGCAATCTTGTCCGCAACTCCAACAAGCTCTGCGAAGA
____________________________________________________________
consensus GGCTAATGCTGCTGGTGCACTCAGCAATCTTGTCCGCAACTCCAACAAGCTCTGCGAAGA
. : . : . : . : . : . :
rJMSF046O14+ CATCATCTCCAAAGGAGCCATGCAGGCTCTACTGAAGTTGGTAGCAGATTACTCAGTCCT
rJMSF049D20+ CATCATCTCCAAAGGAGCCATGCAGGCTCTACTGAAGTTGGTAGCAGATTACTCAGTCCT
____________________________________________________________
consensus CATCATCTCCAAAGGAGCCATGCAGGCTCTACTGAAGTTGGTAGCAGATTACTCAGTCCT
. : . : . : . : . : . :
rJMSF046O14+ AGCGCTTAATCCAAGCAGAAGGGATTCTTTGCATGAGTCGCCTCTAAAGATTGCGCTTTT
rJMSF049D20+ AGCGCTTAATCCAAGCAGAAGGGATTCTTTGCATGAGTCGCCTCTAAAGATTGCGCTTTT
____________________________________________________________
consensus AGCGCTTAATCCAAGCAGAAGGGATTCTTTGCATGAGTCGCCTCTAAAGATTGCGCTTTT
. : . : . : . : . : . :
rJMSF046O14+ CTCATTGGCAAAAATGTGTGCTCATCCGCCTTGCAGACACTTCCTCCGTTCATCAGAGTT
rJMSF049D20+ CTCATTGGCAAAAATGTGTGCTCATCCGCCTTGCAGACACTTCCTCCGTTCATCAGAGTT
____________________________________________________________
consensus CTCATTGGCAAAAATGTGTGCTCATCCGCCTTGCAGACACTTCCTCCGTTCATCAGAGTT
. : . : . : . : . : . :
rJMSF046O14+ GTTCCCAGTGATTAGGCAGCTTCAGCAGTCACCAGAATCAACAATTGGAAATTATGCCTC
rJMSF049D20+ GTTCCCAGTGATTAGGCAGCTTCAGCAGTCACCAGAATCAACAATTGGAAATTATGCCTC
____________________________________________________________
consensus GTTCCCAGTGATTAGGCAGCTTCAGCAGTCACCAGAATCAACAATTGGAAATTATGCCTC
. : . : . : . : . : . :
rJMSF046O14+ TGTGATTGTCAGAAAAGCTGCAGAAGCTTAGATTAGTAGTCAAGTAGCTAATGCAAAACT
rJMSF049D20+ TGTGATTGTCAGAAAAGCTGCAGAAGCTTAGATTAGTAGTCAAGTAGCTAATGCAAAACT
____________________________________________________________
consensus TGTGATTGTCAGAAAAGCTGCAGAAGCTTAGATTAGTAGTCAAGTAGCTAATGCAAAACT
. : . : . : . : . : . :
rJMSF046O14+ TAGATTGGAAGTGTTCTTGTATTCGAACAAACAGAATATTT
rJMSF049D20+ TAGATTGGAAGTGTTCTTGTATTCGAACAAACAGAATATTTTAGTAAATATATTCATCAT
____________________________________________________________
consensus TAGATTGGAAGTGTTCTTGTATTCGAACAAACAGAATATTTTAGTAAATATATTCATCAT