Contig 011428:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMCP001A06+                                                              GGGAGAGT
rJMCP004F10+                                                              GGGAGAGT
rJMCP002A04+                                                                GAGAGT
rJMCP019B07+                                                                    GT
rJMCP005B05+                                                                  GAGT
rJMCP001A03+                                                              GGGAGAGT
rJMCP001B03+                                                              GGGAGAGT
                      ____________________________________________________________
consensus                                                                 GGGAGAGT
 
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rJMCP001A06+          ACATTATTCTTGTTAACATAATACAGAATATAGATATACATCATAGTGTTGCTCgTttAT
rJMCP004F10+          ACATTATTCTTGTTAACATAATACAGAATATAGATATACATCATAGTGTTGCTCCTAAAT
rJMCP002A04+          ACATTATTCTTGTTAACATAATACAGAATATAGATATACATCATAGTGTTGCTCCTAAAT
rJMCP019B07+          ACATTATTCTTGTTAACATAATACAGAATATAGATATACATCATAGTGTTGCTCCTAAAT
rJMCP005B05+          ACATTATTCTTGTTAACATAATACAGGATATAGATATACATCATAGTGTTGCTCCTAAAT
rJMCP001A03+          ACATTATTCTTGTTAACATAATACAGAATATAGATATACATCATAGTGTTGCTCCTAAAT
rJMCP001B03+          ACATTATTCTTGTTAACATAATACAGAATATAGATATACATCATAGTGTTcgagCTAAAT
rJMSF048L12-                                          GATATACATCATAGTGTTGCTCCTAAAT
                      ____________________________________________________________
consensus             ACATTATTCTTGTTAACATAATACAGAATATAGATATACATCATAGTGTTGCTCCTAAAT
 
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rJMCP001A06+          TTTACAACTTTCACACCCATATTCAGGGgttTACAAAATATGTAAGACTCAAAAATAAAc
rJMCP004F10+          TTTACAACTTTCACACCCATATTCAGGGgttTACAAAATATGTAAGACTCAAAAATAAAG
rJMCP002A04+          TTTACAACTTTCACACCCATATTCAGGGCAATACAAAATATGTAAGACTCAAAAATAAAG
rJMCP019B07+          TTTACAACTTTCACACCCATATTCAGGGCAATACAAAATATGTAAGACTCAAAAATAAAG
rJMCP005B05+          TTTACAACTTTCACACCCATATTCAGGGCAATACAAAATATGTAAGACTCAAAAATAAAG
rJMCP001A03+          TTTACAACTTTCACACCCATATTCAGGGCAATACAAAATATGTAAGACTCAAAAATAAAG
rJMCP001B03+          TTTACAACTTTCACACCCATATTCtccagttTtgttttatTGTttctgaCAAAAtatAtc
rJMSF048L12-          TTTACAACTTTCACACCCATATTCAGGGCAATACAAAATATGTAAGACTCAAAAATAAAG
                      ____________________________________________________________
consensus             TTTACAACTTTCACACCCATATTCAGGGCAATACAAAATATGTAAGACTCAAAAATAAAG
 
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rJMCP001A06+          tacTTTTAAACTTTTTAACTTTTAGAT                                 
rJMCP004F10+          ATGTTTTAAACTTTTTAACTTTTAGAT                                 
rJMCP002A04+          ATGTTTTAAACTTTTTAACTTTTAGAT                                 
rJMCP019B07+          ATGTTTTAAACTTTTTAACTTTTAGAT                                 
rJMCP005B05+          ATGTTTTAAACTTTTTAACTTTTAGAT                                 
rJMCP001A03+          ATGTTTTAAACTTTTTAACTTTTAGAT                                 
rJMCP001B03+          tacaaaaAAtgaaaaattgaaaagctatgagac                           
rJMSF048L12-          ATGTTTTAAACTTTTTAACTTTTAGATACTCTGCGTATATATGAGCTCAGCTGTGAACCA
                      ____________________________________________________________
consensus             ATGTTTTAAACTTTTTAACTTTTAGATACTCTGCGTATATATGAGCTCAGCTGTGAACCA
 
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rJMSF048L12-          ATGAATTAAATGAAATGAAGCAGTATCATAGCGTCGTGTGAATCCCTGACTGGTTAGAAC
                      ____________________________________________________________
consensus             ATGAATTAAATGAAATGAAGCAGTATCATAGCGTCGTGTGAATCCCTGACTGGTTAGAAC
 
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rJMSF048L12-          AGAGACAGGAGCAATCCGGTTCATTCAAGTCTCTCTTCAGCAGTCGTTTATCACGATTGA
                      ____________________________________________________________
consensus             AGAGACAGGAGCAATCCGGTTCATTCAAGTCTCTCTTCAGCAGTCGTTTATCACGATTGA
 
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rJMSF048L12-          TCATCAGTTTAATGTGGGGTAACTTTGACGAAACCTGTCGCCATATTTCTTTTACTGCTC
                      ____________________________________________________________
consensus             TCATCAGTTTAATGTGGGGTAACTTTGACGAAACCTGTCGCCATATTTCTTTTACTGCTC
 
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rJMSF048L12-          CATTGGGGTCATCATATACAAAATAATGTTTAACCTTCTTTAACTCCCGCTGCAATTCCA
                      ____________________________________________________________
consensus             CATTGGGGTCATCATATACAAAATAATGTTTAACCTTCTTTAACTCCCGCTGCAATTCCA
 
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rJMSF048L12-          AAATCTTCTCCATACTCATGCCCCTAAGAAGTTTAACCAAGGCTCCTTTCTTTATTGCTG
                      ____________________________________________________________
consensus             AAATCTTCTCCATACTCATGCCCCTAAGAAGTTTAACCAAGGCTCCTTTCTTTATTGCTG
 
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rJMSF048L12-          TGTTCGAATCGACAAAAATTGCTATCTTTCTGTAGTCTATGACATCCTCAAAAGGCAATT
                      ____________________________________________________________
consensus             TGTTCGAATCGACAAAAATTGCTATCTTTCTGTAGTCTATGACATCCTCAAAAGGCAATT
 
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rJMSF048L12-          CAATATAGTCACTAACAATAACAGGGACACACAAGCTCACAATAGCATCAAATAGACGGC
                      ____________________________________________________________
consensus             CAATATAGTCACTAACAATAACAGGGACACACAAGCTCACAATAGCATCAAATAGACGGC
 
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rJMSF048L12-          AAGCTGATGGAGTGTCACCAGCTGGATGTAAGCAAAATTTTGATGTATGCATCCCTTGTG
                      ____________________________________________________________
consensus             AAGCTGATGGAGTGTCACCAGCTGGATGTAAGCAAAATTTTGATGTATGCATCCCTTGTG
 
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rJMSF048L12-          TTGCTGCACGGCGGCTCTCCCTGGACTGTGTACCATGTTTTATAATGACATCAGTTTCAC
                      ____________________________________________________________
consensus             TTGCTGCACGGCGGCTCTCCCTGGACTGTGTACCATGTTTTATAATGACATCAGTTTCAC
 
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rJMSF048L12-          TCTCAAGCACTCGAAAAAGTATATCACGGATTTTTCCTCCCTCTTTTCGATACCGATTCC
                      ____________________________________________________________
consensus             TCTCAAGCACTCGAAAAAGTATATCACGGATTTTTCCTCCCTCTTTTCGATACCGATTCC
 
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rJMSF048L12-          CCATAAAGAAGAGCAAAGTCTTGCGGNTTTGTATCCAATATCTCCTGATATGGATAATCC
                      ____________________________________________________________
consensus             CCATAAAGAAGAGCAAAGTCTTGCGGNTTTGTATCCAATATCTCCTGATATGGATAATCC