Contig 011427:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF048K16Sequence710011427 (2)dbj|BAF36319.1|1e-32hypothetical protein [Ipomoea trifida]659011427 (2)dbj|BAF36319.1|7e-33hypothetical protein [Ipomoea trifida]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF048K16- GAGATCTCAACTCGCTCTCA
                      ____________________________________________________________
consensus GAGATCTCAACTCGCTCTCA
 
. : . : . : . : . : . :
JMSF048K16- GATCTCACCTCTCCTCAACGCCTCATCACAGACCTCCACCGTCGCTCCTCACCATAGACC
                      ____________________________________________________________
consensus GATCTCACCTCTCCTCAACGCCTCATCACAGACCTCCACCGTCGCTCCTCACCATAGACC
 
. : . : . : . : . : . :
JMSF048K16- ACGACTCCGCCGTCGACACCGCCACCCACGACGCCGCTGACATCGCCTCTCTCACCACGA
rJMSF048K16+ CGACTCCGCCGTCGACACCGCCACCCACGACGCCGCNGACATCGCCTCTCTCACCACGA
                      ____________________________________________________________
consensus ACGACTCCGCCGTCGACACCGCCACCCACGACGCCGCTGACATCGCCTCTCTCACCACGA
 
. : . : . : . : . : . :
JMSF048K16- CTCCCTCAGCCTCGATCAAACGCCGCCACCACCAAGATAAGGACTCCAACGCCTCTCTCA
rJMSF048K16+ CTCCCTCAGCCTCGATCAAACGCCGCCACCACCAAGATAAGGACTCCAACGCCTCTCTCA
                      ____________________________________________________________
consensus CTCCCTCAGCCTCGATCAAACGCCGCCACCACCAAGATAAGGACTCCAACGCCTCTCTCA
 
. : . : . : . : . : . :
JMSF048K16- TCAACCAACCACGACGCCGCCACCACCGTCTCCACCGCCACAGTTCTCCTCAGCCGCCGC
rJMSF048K16+ TCAACCAACCACGACGCCGCCACCACCGTCTCCACCGCCACAGTTCTCCTCAGCCGCCGC
                      ____________________________________________________________
consensus TCAACCAACCACGACGCCGCCACCACCGTCTCCACCGCCACAGTTCTCCTCAGCCGCCGC
 
. : . : . : . : . : . :
JMSF048K16- CGCGGCTGCTTCTGCAACTTCCACCGCCAGCAGCTGGTCCGCCGAACTGTACGTGCAGAA
rJMSF048K16+ CGCGGCTGCTTCTGCAACTTCCACCGCCAGCAGCTGGTCCGCCGAACTGTACGTGCAGAA
                      ____________________________________________________________
consensus CGCGGCTGCTTCTGCAACTTCCACCGCCAGCAGCTGGTCCGCCGAACTGTACGTGCAGAA
 
. : . : . : . : . : . :
JMSF048K16- GCAAGAAGTGCACTTTGGAGCATCATTGCAAGATTACTGATTCAAGTTCAAGAAATTGAG
rJMSF048K16+ GCAAGAAGTGCACTTTGGAGCATCATTGCAAGATTACTGATTCAAGTTCAAGAAATTGAG
                      ____________________________________________________________
consensus GCAAGAAGTGCACTTTGGAGCATCATTGCAAGATTACTGATTCAAGTTCAAGAAATTGAG
 
. : . : . : . : . : . :
JMSF048K16- TTGAGTCCGTTGCAGCTACATCAGTATGTTTCAGTTATCACAAGTGAAACAGAAGTGATT
rJMSF048K16+ TTGAGTCCGTTGCAGCTACATCAGTATGTTTCAGTTATCACAAGTGAAACAGAAGTGATT
                      ____________________________________________________________
consensus TTGAGTCCGTTGCAGCTACATCAGTATGTTTCAGTTATCACAAGTGAAACAGAAGTGATT
 
. : . : . : . : . : . :
JMSF048K16- GAGGAGGGAGTTCTCAATCACCAGTCAAATGACTCCAATGAAGAATGCGGGAACTCTGCT
rJMSF048K16+ GAGGAGGGAGTTCTCAATCACCAGTCAAATGACTCCAATGAAGAATGCGGGAACTCTGCT
                      ____________________________________________________________
consensus GAGGAGGGAGTTCTCAATCACCAGTCAAATGACTCCAATGAAGAATGCGGGAACTCTGCT
 
. : . : . : . : . : . :
JMSF048K16- ACCTTGCAAAATTAGCTGCCAGAAATGTAGTTGTATCCTTACAGGTTTATGAATGCTTTC
rJMSF048K16+ ACCTTGCAAAATTAGCTGCCAGAAATGTAGTTGTATCCTTACAGGTTTATGAATGCTTTC
                      ____________________________________________________________
consensus ACCTTGCAAAATTAGCTGCCAGAAATGTAGTTGTATCCTTACAGGTTTATGAATGCTTTC
 
. : . : . : . : . : . :
JMSF048K16- ACCCAGAGTTGAAAATTAAAAATTAACACTTTTGTGCCTTATTCCTCTTACTCTTTACCC
rJMSF048K16+ ACCCAGAGTTGAAAATTAAAAATTAACACTTTTGTGCCTTATTCCTCTTACTCTTTACCC
                      ____________________________________________________________
consensus ACCCAGAGTTGAAAATTAAAAATTAACACTTTTGTGCCTTATTCCTCTTACTCTTTACCC
 
. : . : . : . : . : . :
JMSF048K16- GGTTTTTGAATGGATTCTTTCCCTTTTCCAAAACATTACTCTCCTATGTATTCTTATCTA
rJMSF048K16+ GGTTTTTGAATGGATTCTTTCCCTTTTCCAAAACATTACTCTCCTATGTATTCTTATCTA
                      ____________________________________________________________
consensus GGTTTTTGAATGGATTCTTTCCCTTTTCCAAAACATTACTCTCCTATGTATTCTTATCTA
 
. : . : . : . : . : . :
JMSF048K16- TCTTATTACACGATTTCAACTG
rJMSF048K16+ TCTTATTACACGATTTCAACTGTTTTATTATAAGAGAACTTTAATAGTTAGCATATTAAT
                      ____________________________________________________________
consensus TCTTATTACACGATTTCAACTGTTTTATTATAAGAGAACTTTAATAGTTAGCATATTAAT