Contig 011425:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF018N09+                               TTGAGTCTGATGATGNAGANGAGATATTCCCAGTCCAAG
                      ____________________________________________________________
consensus                                  TTGAGTCTGATGATGNAGANGAGATATTCCCAGTCCAAG
 
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rJMSF018N09+          AAATNTGGTACAAATGGACCTCTTAGTAAGAGGACCTCCCCTCTGTATGTATACACTCAC
rJMSF048H08+                               CTTAGTANGAGGACCTCCCCTCTGTATGTATACACTCAC
                      ____________________________________________________________
consensus             AAATNTGGTACAAATGGACCTCTTAGTAAGAGGACCTCCCCTCTGTATGTATACACTCAC
 
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rJMSF018N09+          AAGATTTCAAGAAGCTGATTTATTAGAAGTGACCACTGCTATGGGGCTTGAAGATGAAAT
rJMSF048H08+          AAGA-TTCAAGAAGCTGATTTATTAGAAGTGACCACTGCTATGGGGCNTGAAGATGAAAT
                      ____________________________________________________________
consensus             AAGATTTCAAGAAGCTGATTTATTAGAAGTGACCACTGCTATGGGGCTTGAAGATGAAAT
 
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rJMSF018N09+          AGACGCAACTGATGATATAGGTGCTGCAGATGCTATACTGGCTACTAGTACTGAAATGAA
rJMSF048H08+          AGACGCAACTGATGATATAGGTGCTGCAGATGCTATACTGGCTACTAGTACTGAAATGAA
                      ____________________________________________________________
consensus             AGACGCAACTGATGATATAGGTGCTGCAGATGCTATACTGGCTACTAGTACTGAAATGAA
 
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rJMSF018N09+          GCAGAATCCTTGGATCCGCAGTGTTGCCAAATTTCACCAAGTGCCTGTGTTTGTAATCAA
rJMSF048H08+          GCAGAATCCTTGGATCCGCAGTGTTGCCAAATTTCACCAAGTGCCTGTGTTTGTAATCAA
                      ____________________________________________________________
consensus             GCAGAATCCTTGGATCCGCAGTGTTGCCAAATTTCACCAAGTGCCTGTGTTTGTAATCAA
 
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rJMSF018N09+          GTCAAATACAATGGCACAAATGGTGAAGGCGGCCCGTATGATTCTTGGAATGGATTCATA
rJMSF048H08+          GTCAAATACAATGGCACAAATGGTGAAGGCGGCCCGTATGATTCTTGGAATGGATTCATA
                      ____________________________________________________________
consensus             GTCAAATACAATGGCACAAATGGTGAAGGCGGCCCGTATGATTCTTGGAATGGATTCATA
 
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rJMSF018N09+          TAGCTCAAAACAACCACTCAAAAATGCCTTCGATATTGAAATTGAAGACGATGCACCAAA
rJMSF048H08+          TAGCTCAAAACAACCACTCAAAAATGCCTTCGATATTGAAATTGAAGACGATGCACCAAA
                      ____________________________________________________________
consensus             TAGCTCAAAACAACCACTCAAAAATGCCTTCGATATTGAAATTGAAGACGATGCACCAAA
 
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rJMSF018N09+          AAGAAAACCAACTCTGGAGGAGATTGATGCCTTGGAGGAAGTTCGGCTTGCAATCGAGTA
rJMSF048H08+          AAGAAAACCAACTCTGGAGGAGATTGATGCCTTGGAGGAAGTTCGGCTTGCAATCGAGTA
                      ____________________________________________________________
consensus             AAGAAAACCAACTCTGGAGGAGATTGATGCCTTGGAGGAAGTTCGGCTTGCAATCGAGTA
 
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rJMSF018N09+          CATAGTGATACCTGGTGGCGAGCCAGTGGAGCTCCTTCCAAGGCGTTCCGAGATAGTAGC
rJMSF048H08+          CATAGTGATACCTGGTGGCGAGCCAGTGGAGCTCCTTCCAAGGCGTTCCGAGATAGTAGC
                      ____________________________________________________________
consensus             CATAGTGATACCTGGTGGCGAGCCAGTGGAGCTCCTTCCAAGGCGTTCCGAGATAGTAGC
 
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rJMSF018N09+          CCAGCAAGTTAAGCTGGTAGAGAGCTACCAGTTGGCTGTAGAGAATTCAGGTACTGAACT
rJMSF048H08+          CCAGCAAGTTAAGCTGGTAGAGAGCTACCAGTTGGCTGTAGAGAATTCAGGTACTGAACT
                      ____________________________________________________________
consensus             CCAGCAAGTTAAGCTGGTAGAGAGCTACCAGTTGGCTGTAGAGAATTCAGGTACTGAACT
 
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rJMSF018N09+          CAACCCCAGGCTGCAAATCCTTCCTCAAAAACTAAACAAGGCTTCAGAGAAGCACTCTAA
rJMSF048H08+          CAACCCCAGGCTGCAAATCCTTCCTCAAAAACTAAACAAGGCTTCAGAGAAGCACTCTAA
                      ____________________________________________________________
consensus             CAACCCCAGGCTGCAAATCCTTCCTCAAAAACTAAACAAGGCTTCAGAGAAGCACTCTAA
 
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rJMSF018N09+          ATCTCATTCAAGCCGGACTATAAGTTCCGGCATCTCATTCACTACCGGCACCGGAGGCGC
rJMSF048H08+          ATCTCATTCAAGCCGGACTATAAGTTCCGGCATCTCATTCACTACCGGCACCGGAGGCGC
                      ____________________________________________________________
consensus             ATCTCATTCAAGCCGGACTATAAGTTCCGGCATCTCATTCACTACCGGCACCGGAGGCGC
 
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rJMSF018N09+          TACCGTTGCTCGGCTGCCATTGTTACCGGAATAAGTCAAGTCTCTAATTGTGAGACAATT
rJMSF048H08+          TACCGTTGCTCGGCTGCCATTGTTACCGGAATAAGTCAAGTCTCTAATTGTGAGACAATT
                      ____________________________________________________________
consensus             TACCGTTGCTCGGCTGCCATTGTTACCGGAATAAGTCAAGTCTCTAATTGTGAGACAATT
 
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rJMSF018N09+          CCATATTCAATGACATGTTTGAAACAGTGTA-CAGTTGTATATGTAAATGTGTATGTC  
rJMSF048H08+          CCATATTCAATGACATGTTTGAAACAGTGTACCAGTTGTATATGTAAATGTGTATGTCTC
                      ____________________________________________________________
consensus             CCATATTCAATGACATGTTTGAAACAGTGTACCAGTTGTATATGTAAATGTGTATGTCTC