Contig 011423:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF020K03Sequence710000966 (2)ref|XP_006592769.1|8e-110PREDICTED: mRNA-decapping enzyme-like protein-like isoform X2 [Glycine max]414011423 (2)ref|XP_002273425.1|6e-11PREDICTED: mRNA-decapping enzyme-like protein isoform X2 [Vitis vinifera] emb|C
JMSF047K21Sequence709000966 (2)ref|XP_006592769.1|3e-109PREDICTED: mRNA-decapping enzyme-like protein-like isoform X2 [Glycine max]411011423 (2)ref|XP_002273425.1|6e-11PREDICTED: mRNA-decapping enzyme-like protein isoform X2 [Vitis vinifera] emb|C

Alignment

This contig is upended


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rJMSF020K03+              CCAACCATTTCCTCCACCCTCACCCCCTCCATCTCTTACTCCCACTGCTACTCCCA
rJMSF047K21+                       TCCTCCACCCTCACCCCCTCCATCTCTTACTCCCACTGCTACTCCCA
                      ____________________________________________________________
consensus                 CCAACCATTTCCTCCACCCTCACCCCCTCCATCTCTTACTCCCACTGCTACTCCCA
 
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rJMSF020K03+          TACCAAATACTGTATCTATAATTACCAGAGACAAGGTCCGTGAGGCCCTTCTGATTCTTG
rJMSF047K21+          TACCAAATACTGTATCTATAATTACCAGAGACAAGGTCCGTGAGGCCCTTCTGATTCTTG
                      ____________________________________________________________
consensus             TACCAAATACTGTATCTATAATTACCAGAGACAAGGTCCGTGAGGCCCTTCTGATTCTTG
 
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rJMSF020K03+          TTCAGGACAATGAGTTCATCGACATGGTTCATCGTGCACTGATGAATGCTCACCATTAAT
rJMSF047K21+          TTCAGGACAATGAGTTCATCGACATGGTTCATCGTGCACTGATGAATGCTCACCATTAAT
                      ____________________________________________________________
consensus             TTCAGGACAATGAGTTCATCGACATGGTTCATCGTGCACTGATGAATGCTCACCATTAAT
 
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rJMSF020K03+          GGAGAATTGGAGGAAGCACTGGTACTGACCAAATTCATGTTCACTGTCTGTGTGCAAGAG
rJMSF047K21+          GGAGAATTGGAGGAAGCACTGGTACTGACCAAATTCATGTTCACTGTCTGTGTGCAAGAG
                      ____________________________________________________________
consensus             GGAGAATTGGAGGAAGCACTGGTACTGACCAAATTCATGTTCACTGTCTGTGTGCAAGAG
 
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rJMSF020K03+          GAGGATTGAGATTTTGTTCCAGAAGTTAGACCCATTCTGTAGTCTAGTCTAGTTAAATAT
rJMSF047K21+          GAGGATTGAGATTTTGTTCCAGAAGTTAGACCCATTCTGTAGTCTAGTCTAGTTAAATAT
                      ____________________________________________________________
consensus             GAGGATTGAGATTTTGTTCCAGAAGTTAGACCCATTCTGTAGTCTAGTCTAGTTAAATAT
 
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rJMSF020K03+          ATATATATATATTGCAGTTGTAGATATACACAATTTATTTGGGTCTGACCATATCAAATT
rJMSF047K21+          ATATATATATATTGCAGTTGTAGATATACACAATTTATTTGGGTCTGACCATATCAAATT
                      ____________________________________________________________
consensus             ATATATATATATTGCAGTTGTAGATATACACAATTTATTTGGGTCTGACCATATCAAATT
 
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rJMSF020K03+          AAAACTCAAAAGTGATTTTNTTAGTAGTTTTGTGTGTTGGATTATTTGTTGATATAAA  
rJMSF047K21+          AAAACTCAAAAGTGATTTTTTTAGTAGTTTTGTGTGTTGGATTATTTGTTGATATAAATA
                      ____________________________________________________________
consensus             AAAACTCAAAAGTGATTTTTTTAGTAGTTTTGTGTGTTGGATTATTTGTTGATATAAATA