Contig 011422:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF012J03Sequence230011422 (6)742011422 (6)emb|CDP07401.1|3e-96unnamed protein product [Coffea canephora]
JMSF018O13Sequence465011422 (6)emb|CDP07401.1|1e-60unnamed protein product [Coffea canephora]737011422 (6)emb|CDP07401.1|2e-96unnamed protein product [Coffea canephora]
JMSF047D18Sequence716011422 (6)emb|CDP07401.1|2e-96unnamed protein product [Coffea canephora]738011422 (6)emb|CDP07401.1|2e-96unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF012J03-                                            GATTGAGTTTTTACGCCAGTCTCGATC
JMSF018O13-                                                GAGTTTTTACGCCAGTCTCGATC
JMSF047D18-                                                GAGTTTTTACGCCAGTCTCGATC
                      ____________________________________________________________
consensus                                              GATTGAGTTTTTACGCCAGTCTCGATC
 
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JMSF012J03-           GTCGACTCTGAACTCTGACTTCTCGTCGCAGTCGGACCCGAATCTCCAGCCACCGCTCTC
JMSF018O13-           GTCGACTCTGAACTCTGACTTCTCGTCGCAGTCGGACCCGAATCTCCAGCCACCGCTCTC
JMSF047D18-           GTCGACTCTGAACTCTGACTTCTCGTCGCAGTCGGACCCGAATCTCCAGCCACCGCTCTC
                      ____________________________________________________________
consensus             GTCGACTCTGAACTCTGACTTCTCGTCGCAGTCGGACCCGAATCTCCAGCCACCGCTCTC
 
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JMSF012J03-           CCGGCGGCGGAGGAGGGAAGGAAAAAGCTTCTGATTTCCTTTTAGCGCGAGCTTGAATCA
JMSF018O13-           CCGGCGGCGGAGGAGGGAAGGAAAAAGCTTCTGATTTCCTTTTAGCGCGAGCTTGAATCA
JMSF047D18-           CCGGCGGCGGAGGAGGGAAGGAAAAAGCTTCTGATTTCCTTTTAGCGCGAGCTTGAATCA
rJMSF012J03+                                               CCTTTTAGCGCGAGCTTGAATCA
rJMSF018O13+                                                    TAGCGCGAGCTTGAATCA
rJMSF047D18+                                                    TAGCGCGAGCTTGAATCA
                      ____________________________________________________________
consensus             CCGGCGGCGGAGGAGGGAAGGAAAAAGCTTCTGATTTCCTTTTAGCGCGAGCTTGAATCA
 
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JMSF012J03-           ACTCAAGCACTTGTTTTGTGCTAGTTTATACTCTGAAAATGATCCGATTCATACTGCTCC
JMSF018O13-           ACTCAAGCACTTGTTTTGTGCTAGTTTATACTCTGAAAATGATCCGATTCATACTGCTCC
JMSF047D18-           ACTCAAGCACTTGTTTTGTGCTAGTTTATACTCTGAAAATGATCCGATTCATACTGCTCC
rJMSF012J03+          ACTCAAGCACTTGTTTTGTGCTAGNTTATACTCTGAAAATGATCCGATTCATACTGCTCC
rJMSF018O13+          ACTCAAGCACTTGTTTTGTGCTAGTTTATACTCTGAAAATGATCCGATTCATACTGCTCC
rJMSF047D18+          ACTCAAGCACTTGTTTTGTGCTAGTTTATACTCTGAAAATGATCCGATTCATACTGCTCC
                      ____________________________________________________________
consensus             ACTCAAGCACTTGTTTTGTGCTAGTTTATACTCTGAAAATGATCCGATTCATACTGCTCC
 
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JMSF012J03-           AGAACCGGCAAGGTAAGACTCGA                                     
JMSF018O13-           AGAACCGGCAAGGTAAGACTCGATTGGCCAAGTATTACATTCCTCTGGAGGAATCCGAGA
JMSF047D18-           AGAACCGGCAAGGTAAGACTCGATTGGCCAAGTATTACATTCCTCTGGAGGAATCCGAGA
rJMSF012J03+          AGAACCGGCAAGGTAAGACTCGATTGGCCAAGTATTACATTCCTCTGGAGGAATCCGAGA
rJMSF018O13+          AGAACCGGCAAGGTAAGACTCGATTGGCCAAGTATTACATTCCTCTGGAGGAATCCGAGA
rJMSF047D18+          AGAACCGGCAAGGTAAGACTCGATTGGCCAAGTATTACATTCCTCTGGAGGAATCCGAGA
                      ____________________________________________________________
consensus             AGAACCGGCAAGGTAAGACTCGATTGGCCAAGTATTACATTCCTCTGGAGGAATCCGAGA
 
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JMSF018O13-           AGCACAAAGTCGAATACGAGGTTCACAGATTGGTTGTGAACAGAGATCCCAAATTCACCA
JMSF047D18-           AGCACAAAGTCGAATACGAGGTTCACAGATTGGTTGTGAACAGAGATCCCAAATTCACCA
rJMSF012J03+          AGCACAAAGTCGAATACGAGGTTCACAGATTGGTTGTGAACAGAGATCCCAAATTCACCA
rJMSF018O13+          AGCACAAAGTCGAATACGAGGTTCACAGATTGGTTGTGAACAGAGATCCCAAATTCACCA
rJMSF047D18+          AGCACAAAGTCGAATACGAGGTTCACAGATTGGTTGTGAACAGAGATCCCAAATTCACCA
                      ____________________________________________________________
consensus             AGCACAAAGTCGAATACGAGGTTCACAGATTGGTTGTGAACAGAGATCCCAAATTCACCA
 
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JMSF018O13-           ACTTCGTCGAGTTCCGGACCTACAAGATAATCTACAGGCGATATGCGGGATTGTTTTTCT
JMSF047D18-           ACTTCGTCGAGTTCCGGACCTACAAGATAATCTACAGGCGATATGCGGGATTGTTTTTCT
rJMSF012J03+          ACTTCGTCGAGTTCCGGACCTACAAGATAATCTACAGGCGATATGCGGGATTGTTTTTCT
rJMSF018O13+          ACTTCGTCGAGTTCCGGACCTACAAGATAATCTACAGGCGATATGCGGGATTGTTTTTCT
rJMSF047D18+          ACTTCGTCGAGTTCCGGACCTACAAGATAATCTACAGGCGATATGCGGGATTGTTTTTCT
                      ____________________________________________________________
consensus             ACTTCGTCGAGTTCCGGACCTACAAGATAATCTACAGGCGATATGCGGGATTGTTTTTCT
 
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JMSF018O13-           CGCTCTGTGTTGATATAACAGACAATGAGTTGGCTTATTTGGAGTGCATCCACTTATTTG
JMSF047D18-           CGCTCTGTGTTGATATAACAGACAATGAGTTGGCTTATTTGGAGTGCATCCACTTATTTG
rJMSF012J03+          CGCTCTGTGTTGATATAACAGACAATGAGTTGGCTTATTTGGAGTGCATCCACTTATTTG
rJMSF018O13+          CGCTCTGTGTTGATATAACAGACAATGAGTTGGCTTATTTGGAGTGCATCCACTTATTTG
rJMSF047D18+          CGCTCTGTGTTGATATAACAGACAATGAGTTGGCTTATTTGGAGTGCATCCACTTATTTG
                      ____________________________________________________________
consensus             CGCTCTGTGTTGATATAACAGACAATGAGTTGGCTTATTTGGAGTGCATCCACTTATTTG
 
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JMSF018O13-           TGGAGATTTTGGATCACTTCT                                       
JMSF047D18-           TGGAGATTTTGGATCACTTCTTCAGCAATGTTTGCGAGTTAGATTTGGTTTTTAACTTTC
rJMSF012J03+          TGGAGATTTTGGATCACTTCTTCAGCAATGTTTGCGAGTTAGATTTGGTTTTTAACTTTC
rJMSF018O13+          TGGAGATTTTGGATCACTTCTTCAGCAATGTTTGCGAGTTAGATTTGGTTTTTAACTTTC
rJMSF047D18+          TGGAGATTTTGGATCACTTCTTCAGCAATGTTTGCGAGTTAGATTTGGTTTTTAACTTTC
                      ____________________________________________________________
consensus             TGGAGATTTTGGATCACTTCTTCAGCAATGTTTGCGAGTTAGATTTGGTTTTTAACTTTC
 
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JMSF047D18-           ACAAGGTATATCTGATTCTGGATGAGTTCATTCTTGCTGGGGAGCTCCAAGAAACAAGTA
rJMSF012J03+          ACAAGGTATATCTGATTCTGGATGAGTTCATTCTTGCTGGGGAGCTCCAAGAAACAAGTA
rJMSF018O13+          ACAAGGTATATCTGATTCTGGATGAGTTCATTCTTGCTGGGGAGCTCCAAGAAACAAGTA
rJMSF047D18+          ACAAGGTATATCTGATTCTGGATGAGTTCATTCTTGCTGGGGAGCTCCAAGAAACAAGTA
                      ____________________________________________________________
consensus             ACAAGGTATATCTGATTCTGGATGAGTTCATTCTTGCTGGGGAGCTCCAAGAAACAAGTA
 
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JMSF047D18-           AGAAGGCCATCATAGAGAGAATGGGTGAACTGGAAAAGCAGGAATGAAGGCTCATGGCAC
rJMSF012J03+          AGAAGGCCATCATAGAGAGAATGGGTGAACTGGAAAAGCAGGAATGAAGGCTCATGGCAC
rJMSF018O13+          AGAAGGCCATCATAGAGAGAATGGGTGAACTGGAAAAGCAGGAATGAAGGCTCATGGCAC
rJMSF047D18+          AGAAGGCCATCATAGAGAGAATGGGTGAACTGGAAAAGCAGGAATGAAGGCTCATGGCAC
                      ____________________________________________________________
consensus             AGAAGGCCATCATAGAGAGAATGGGTGAACTGGAAAAGCAGGAATGAAGGCTCATGGCAC
 
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JMSF047D18-           CCTGTTTTCACTTTTATCTGGCATCAACAATATATGGCACCTCTGTTGTCACCAGACTGA
rJMSF012J03+          CCTGTTTTCACTTTTATCTGGCATCAACAATATATGGCACCTCTGTTGTCACCAGACTGA
rJMSF018O13+          CCTGTTTTCACTTTTATCTGGCATCAACAATATATGGCACCTCTGTTGTCACCAGACTGA
rJMSF047D18+          CCTGTTTTCACTTTTATCTGGCATCAACAATATATGGCACCTCTGTTGTCACCAGACTGA
                      ____________________________________________________________
consensus             CCTGTTTTCACTTTTATCTGGCATCAACAATATATGGCACCTCTGTTGTCACCAGACTGA
 
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JMSF047D18-           ATTTTATTGAATACCATTTACCCATCTGA                               
rJMSF012J03+          ATTTTATTGAATACCATTTACCCATCTGATTTTGTCTTTGTGCTTATTGTAATTCTGTTT
rJMSF018O13+          ATTTTATTGAATACCATTTACCCATCTGATTTTGTCTTTGTGCTTATTGTAATTCTGTTT
rJMSF047D18+          ATTTTATTGAATACCATTTACCCATCTGATTTTGTCTTTGTGCTTATTGTAATTCTGTTT
                      ____________________________________________________________
consensus             ATTTTATTGAATACCATTTACCCATCTGATTTTGTCTTTGTGCTTATTGTAATTCTGTTT
 
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rJMSF012J03+          GATTGCCCAGCATTTGTTTGCACTTTACATGTAAAGGAGGTTGAATACTGAAATTACAAG
rJMSF018O13+          GATTGCCCAGCATTTGTTTGCACTTTACATGTAAAGGAGGTTGAATACTGAAATTACAAG
rJMSF047D18+          GATTGCCCAGCATTTGTTTGCACTTTACATGTAAAGGAGGTTGAATACTGAAATTACAAG
                      ____________________________________________________________
consensus             GATTGCCCAGCATTTGTTTGCACTTTACATGTAAAGGAGGTTGAATACTGAAATTACAAG
 
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rJMSF012J03+          TCTTCTGAGTTTTGTAATCTCATCTGAAAGAACCAGTTTGCCAATGCTCACACAATATT 
rJMSF018O13+          TCTTCTGAGTTTTGTAATCTCATCTGAAAGAACCAGTTTGCCAATGCTCACACAATATT 
rJMSF047D18+          TCTTCTGAGTTTTGTAATCTCATCTGAAAGAACCAGTTTGCCAATGCTCACACAATATTG
                      ____________________________________________________________
consensus             TCTTCTGAGTTTTGTAATCTCATCTGAAAGAACCAGTTTGCCAATGCTCACACAATATTG