Contig 011421:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF008P04+                                                CTGAAGCAACAATTGTNGGCGG
                      ____________________________________________________________
consensus                                                   CTGAAGCAACAATTGTNGGCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF008P04+          TGAAACACCACAGAATCTAGGCCAAGCTTTCAAGAACCATATGAGTGAAATGTTTGCTTT
rJMSF047D04+                                                 TATGAGTGAAATGTTTGCTTT
                      ____________________________________________________________
consensus             TGAAACACCACAGAATCTAGGCCAAGCTTTCAAGAACCATATGAGTGAAATGTTTGCTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF008P04+          CCACGCAACCATGATGTCTAACACTCTTGGAACTTCAATAGTTGTTTTCACAAGAACTGG
rJMSF047D04+          CCACGCAACCATGATGTCTAACACTCTTGGAACTTCAATAGTTGTTTTCACAAGAACTGG
                      ____________________________________________________________
consensus             CCACGCAACCATGATGTCTAACACTCTTGGAACTTCAATAGTTGTTTTCACAAGAACTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF008P04+          TTTCATGGGCATACTACTGAGCCATTACCGACCTTCTGGCACTATTTTTGCCTTCACAAA
rJMSF047D04+          TTTCATGGGCATACTACTGAGCCATTACCGACCTTCTGGCACTATTTTTGCCTTCACAAA
                      ____________________________________________________________
consensus             TTTCATGGGCATACTACTGAGCCATTACCGACCTTCTGGCACTATTTTTGCCTTCACAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF008P04+          TGAGAAGAAGATACAACAGAGATTAGCTTTGTACCAAGGCATATGCCCCATATACATGGA
rJMSF047D04+          TGAGAAGAAGATACAACAGAGATTAGCTTTGTACCAAGGCATATGCCCCATATACATGGA
                      ____________________________________________________________
consensus             TGAGAAGAAGATACAACAGAGATTAGCTTTGTACCAAGGCATATGCCCCATATACATGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF008P04+          GTTCTCTAGTGATGCTGAGGAGACATTTACAAATGCATTGTCGGTGCTGCAGAAGCAAGG
rJMSF047D04+          GTTCTCTAGTGATGCTGAGGAGACATTTACAAATGCATTGTCGGTGCTGCAGAAGCAAGG
                      ____________________________________________________________
consensus             GTTCTCTAGTGATGCTGAGGAGACATTTACAAATGCATTGTCGGTGCTGCAGAAGCAAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF008P04+          AATGGTGAAGGAAGGAGAACAGGTAGCACTTGTTCAGAGTGGCCAACAACCTATCTGGCG
rJMCP001H12-                                                       ACAACCTATCTGGCG
rJMSF047D04+          AATGGTGAAGGAAGGAGAACAGGTAGCACTTGTTCAGAGTGGCCAACAACCTATCTGGCG
                      ____________________________________________________________
consensus             AATGGTGAAGGAAGGAGAACAGGTAGCACTTGTTCAGAGTGGCCAACAACCTATCTGGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF008P04+          GCTTCAATCCACTCACAACATTCAGGTTAGGAAGGTTTAGACAGAGACCATGAAAGATCC
rJMCP001H12-          GCTTCAATCCACTCACAACATTCAGGTTAGGAAGGTTTAGACAGAGACCATGAAAGATCC
rJMSF047D04+          GCTTCAATCCACTCACAACATTCAGGTTAGGAAGGTTTAGACAGAGACCATGAAAGATCC
                      ____________________________________________________________
consensus             GCTTCAATCCACTCACAACATTCAGGTTAGGAAGGTTTAGACAGAGACCATGAAAGATCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF008P04+          ACCATCCATGTATGCTTCCCTGCTTGGTAGAATTTTCCTTCAATTATCAGATAAATTCCT
rJMCP001H12-          ACCATCCATATATGCTTCCCTGCTTGGTAGAATTTTCCTTCAATTATCAGATAAATTCCT
rJMSF047D04+          ACCATCCATGTATGCTTCCCTGCTTGGTAGAATTTTCCTTCAATTATCAGATAAATTCCT
                      ____________________________________________________________
consensus             ACCATCCATGTATGCTTCCCTGCTTGGTAGAATTTTCCTTCAATTATCAGATAAATTCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF008P04+          TACTAATTACGAGGCAGCTTGGTTTTAGTTTGTTGTATTTTTTTTCCTACCCCCATTTCT
rJMCP001H12-          TACTAATTACGAGGCAGCTTGGTTTTAGTTCGTTGTATTTTTTTTCCTACCCCCATTTCT
rJMSF047D04+          TACTAATTACGAGGCAGCTTGGTTTTAGTTTGTTGTATTTTTTTTCCTACCCCCATTTCT
                      ____________________________________________________________
consensus             TACTAATTACGAGGCAGCTTGGTTTTAGTTTGTTGTATTTTTTTTCCTACCCCCATTTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF008P04+          GGTGAACACAGCGTGAAAGAGTGTTGTAGTGAGTTTATGGTTAGCATATCCTTTACACTT
rJMCP001H12-          GGTGAACACAGCGTGAAAGAGTGTTGTAGTGAGTTTATGGTTAGCATATCCTTTACACTT
rJMSF047D04+          GGTGAACACAGCGTGAAAGAGTGTTGTAGTGAGTTTATGGTTAGCATATCCTTTACACTT
                      ____________________________________________________________
consensus             GGTGAACACAGCGTGAAAGAGTGTTGTAGTGAGTTTATGGTTAGCATATCCTTTACACTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF008P04+          TTACAGTTTGGTAAAGAAGTTGAATACTGTTAATGTTGATGCGGCATACTTACTCGTGAT
rJMCP001H12-          TTACAGTTTGGTAAAGAAGTTGAATACTGTTAATGTTGATGCGGCATACTTACTCGTGAT
rJMSF047D04+          TTACAGTTTGGTAAAGAAGTTGAATACTGTTAATGTTGATGCGGCATACTTACTCGTGAT
                      ____________________________________________________________
consensus             TTACAGTTTGGTAAAGAAGTTGAATACTGTTAATGTTGATGCGGCATACTTACTCGTGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF008P04+          GTTGCCCATGTTTAAAATGTATGATTGTAGTGAATTCTCATGAATCATTATGTACTGCTA
rJMCP001H12-          GTTGCCCATGTTTAAAATGTATGATTGTAGTGAATTCTCATGAATCATTATGTACTGCTA
rJMSF047D04+          GTTGCCCATGTTTAAAATGTATGATTGTAGTGAATTCTCATGAATCATTATGTACTGCTA
                      ____________________________________________________________
consensus             GTTGCCCATGTTTAAAATGTATGATTGTAGTGAATTCTCATGAATCATTATGTACTGCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF008P04+          TAATGTAG                                                    
rJMCP001H12-          TAATGTAGCTAAGTAGCTTAATTGTATTATC                             
rJMSF047D04+          TAATGTAGCTAAGTAGCTTAATTGTATTATCATATCATGAACAAACTTGTATACAAATAA
                      ____________________________________________________________
consensus             TAATGTAGCTAAGTAGCTTAATTGTATTATCATATCATGAACAAACTTGTATACAAATAA