Contig 011420:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF022F17Sequence677005286 (9)ref|NP_001233765.1|9e-71auxin response factor 2 [Solanum lycopersicum] ref|XP_010318416.1| PREDICTED: au785011420 (3)ref|XP_009625132.1|9e-76PREDICTED: auxin response factor 2-like isoform X2 [Nicotiana tomentosiformis]
JMSF032P19Sequence677005286 (9)ref|NP_001233765.1|9e-80auxin response factor 2 [Solanum lycopersicum] ref|XP_010318416.1| PREDICTED: au767011420 (3)ref|XP_006346635.1|1e-65PREDICTED: auxin response factor 2-like [Solanum tuberosum]
JMSF046O23Sequence715005286 (9)ref|NP_001233765.1|6e-80auxin response factor 2 [Solanum lycopersicum] ref|XP_010318416.1| PREDICTED: au670011420 (3)ref|XP_006346635.1|7e-22PREDICTED: auxin response factor 2-like [Solanum tuberosum]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF022F17+                                                               TGAGTCA
                      ____________________________________________________________
consensus                                                                  TGAGTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF022F17+          GGTCACANGCATGTTGGTACAAACTCTCATCAAACCACTGCAATTGAATTAAATCAGAGG
rJMSF032P19+                                                        AATTAAATCAGAGG
                      ____________________________________________________________
consensus             GGTCACANGCATGTTGGTACAAACTCTCATCAAACCACTGCAATTGAATTAAATCAGAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF022F17+          TCTGAACAAACAAAGGTTTCTAAA-GGGCTAGATAGTAGGCCTACTGGCAATGAACAGGA
rJMSF032P19+          TCTGANCAANCAAAGGTTTCTAAANGGGCTAGATAGTAGGCCTACTGGCAATGANCAGGA
                      ____________________________________________________________
consensus             TCTGAACAAACAAAGGTTTCTAAANGGGCTAGATAGTAGGCCTACTGGCAATGAACAGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF022F17+          GAAACAATTTCAAACTCTCCGCAGTGGTGTTAGAGACAAGGAGGGGAAAATCTACAGTGG
rJMSF032P19+          GAAACAATTTCCAACTCTCCGCAGTGGTGTTAGAGACAAGGAGGGGAAAATCTACAGTGG
                      ____________________________________________________________
consensus             GAAACAATTTCCAACTCTCCGCAGTGGTGTTAGAGACAAGGAGGGGAAAATCTACAGTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF022F17+          TTCAACAAGGAGTTGCACCAAGGTTCAAAAACAGGGCACGGCCCTTGGCAGGTCTGTGGA
rJMSF032P19+          TTCAACAAGGAGTTGCACCAAGGTTCAAAAACAGGGCACGGCCCTTGGCAGGTCTGTGGA
                      ____________________________________________________________
consensus             TTCAACAAGGAGTTGCACCAAGGTTCAAAAACAGGGCACGGCCCTTGGCAGGTCTGTGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF022F17+          TCTTTCCAAGTTCAAGAACTATGATGAATTGATTACTAAACTGGACCAGCTGTTTGACTT
rJMSF032P19+          TCTTTCCAAGTTCAAGAACTATGATGAATTGATTACTAAACTGGACCAGCTGTTTGACTT
                      ____________________________________________________________
consensus             TCTTTCCAAGTTCAAGAACTATGATGAATTGATTACTAAACTGGACCAGCTGTTTGACTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF022F17+          TAATGGTGAACTTAAGTCTCAGAACAAGAATTGGATCGTTGTGTATACTGATGACGAGGG
rJMSF032P19+          TAATGGTGAACTTAAGTCTCAGAACAAGAATTGGATCGTTGTGTATACTGATGACGAGGG
rJMSF046O23+                                                            ATGACGAGGG
                      ____________________________________________________________
consensus             TAATGGTGAACTTAAGTCTCAGAACAAGAATTGGATCGTTGTGTATACTGATGACGAGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF022F17+          TGATATGATGCTGGTGGGAGATGATCCATGGCAAGAATTTTGTGGTATGGTTCGCAAAAT
rJMSF032P19+          TGATATGATGCTGGTGGGAGATGATCCATGGCAAGAATTTTGTGGTATGGTTCGCAAAAT
rJMSF046O23+          TGATATGATGCTGGTGGGAGATGATTCATGGCAAGAATTTTGTGGTATGGTTCGCAAAAT
                      ____________________________________________________________
consensus             TGATATGATGCTGGTGGGAGATGATCCATGGCAAGAATTTTGTGGTATGGTTCGCAAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF022F17+          CTGCATCTACACGAAAGATGAGGTACAGCAGATGAATCCAAGGGCTCTAAATTCAAAAGG
rJMSF032P19+          CTGCATCTACACGAAAGATGAGGTACAGCAGATGAATCCAAGGGCTCTAAATTCAAAAGG
rJMSF046O23+          CTGCATCTACACGAAAGATGAGGTACAGCAGATGAATCCAAGGGCTCTAAATTCAAAAGG
                      ____________________________________________________________
consensus             CTGCATCTACACGAAAGATGAGGTACAGCAGATGAATCCAAGGGCTCTAAATTCAAAAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF022F17+          CGATGATATGTTATCTGTTGCAGAAGGATTGGACGCTAACGAAGTGAAGAGTTCAGAGTT
rJMSF032P19+          CGATGATATGTTATCTGTTGCAGAAGGATTGGACGCTAACGAAGTGAAGAGTTCAGAGTT
rJMSF046O23+          CGATGATATGTTATCTGTTGCAGAAGGATTGGACGCTAACGAAGTGAAGAGTTCAGAGTT
                      ____________________________________________________________
consensus             CGATGATATGTTATCTGTTGCAGAAGGATTGGACGCTAACGAAGTGAAGAGTTCAGAGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF022F17+          GCCTTCAGCATCCAGCGCTGAGGAATGTTAAAAATTTCCTTAAATCCTAGGTTTCTTATA
rJMSF032P19+          GCCTTCAGCATCCAGCGCTGAGGAATGTTAAAAATTTCCTTAAATCCTAGGTTTCTTATA
rJMSF046O23+          GCCTTCAGCATCCAGCGCTGAGGAATGTTAAAAATTTCCTTAAATCCTAGGTTTCTTATA
                      ____________________________________________________________
consensus             GCCTTCAGCATCCAGCGCTGAGGAATGTTAAAAATTTCCTTAAATCCTAGGTTTCTTATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF022F17+          GGTTCGTAGTGCATTAGAGGGAGAAGAGCAAAGGTTTACTGATCCAACTGGTGTCTTTGG
rJMSF032P19+          GGTTCGTAGTGCATTAGAGGGAGAAGAGCAAAGGTTTACTGATCCAACTGGTGTCTTTGG
rJMSF046O23+          GGTTCGTAGTGCATTAGAGGGAGAAGAGCAAAGGTTTACTGATCCAACTGGTGTCTTTGG
                      ____________________________________________________________
consensus             GGTTCGTAGTGCATTAGAGGGAGAAGAGCAAAGGTTTACTGATCCAACTGGTGTCTTTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF022F17+          GGATGCATGGGTTCTTTTCAACTCTCTCTCTATATATAGATATATAGATATTTTGGGATC
rJMSF032P19+          GGATGCATGGGTTCTTTTCAACTCTCTCTCTATATATAGATATATAGATATTTTGGGATC
rJMSF046O23+          GGATGCATGGGTTCTTTTCAACTCTCTCTCTATATATAGATATATAGATATTTTGGGATC
                      ____________________________________________________________
consensus             GGATGCATGGGTTCTTTTCAACTCTCTCTCTATATATAGATATATAGATATTTTGGGATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF022F17+          CCTGTACGTATATATTATCTGTGGCGACGATCTTGCTTTAAATATTGGATGTTGTATAT 
rJMSF032P19+          CCTGTACGTATATATTATCTGTGGCGACGATCTTGCTTTAAATATTGGATGTTGTATATA
rJMSF046O23+          CCTGTACGTATATATTATCTGTGGCGACGATCTTGCTTTAAATATTGGATGTTGTATATA
                      ____________________________________________________________
consensus             CCTGTACGTATATATTATCTGTGGCGACGATCTTGCTTTAAATATTGGATGTTGTATATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032P19+          GCCAGCCAGCCCATCCCACTGAGGTTTTCAGCT                           
rJMSF046O23+          GCCAGCCAGCCCATCCCACTGAGGTTTTCAGCTGTGGATGTAAGTAAGAAGTAATGTGAT
                      ____________________________________________________________
consensus             GCCAGCCAGCCCATCCCACTGAGGTTTTCAGCTGTGGATGTAAGTAAGAAGTAATGTGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF046O23+          GACTACTCTGCTTATTGTTGATTTTATGTACAATTGATGTCCAAGTCCAAGAACTATGAA
                      ____________________________________________________________
consensus             GACTACTCTGCTTATTGTTGATTTTATGTACAATTGATGTCCAAGTCCAAGAACTATGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF046O23+          TGTAGGCGTGTTTGCAAGCTAACTTAGAGATTTTGTAATTACTGACGAAGCAAAATTGGT
                      ____________________________________________________________
consensus             TGTAGGCGTGTTTGCAAGCTAACTTAGAGATTTTGTAATTACTGACGAAGCAAAATTGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF046O23+          ATGGTGACTGGTGAGCCAATCTCAGGGGGAGCAAATTATACGGCTTTCATGTCTCCAAAT
                      ____________________________________________________________
consensus             ATGGTGACTGGTGAGCCAATCTCAGGGGGAGCAAATTATACGGCTTTCATGTCTCCAAAT