Contig 011419:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF008L12Sequence134006711 (2)733011419 (2)ref|XP_009766110.1|1e-119PREDICTED: cationic amino acid transporter 1-like [Nicotiana sylvestris]
JMSF046I05Sequence758006711 (2)ref|XP_011085217.1|4e-91PREDICTED: cationic amino acid transporter 1-like isoform X3 [Sesamum indicum]842011419 (2)ref|XP_009766110.1|6e-109PREDICTED: cationic amino acid transporter 1-like [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF046I05+                                                                    GG
                      ____________________________________________________________
consensus                                                                       GG
 
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rJMSF008L12+                           GCTGGTGAGTGCAGTTGGGCAAGCGCGGTATCTAA-CCCACAT
rJMSF046I05+          GATGACCTTCTGTGTTGGCTGGTGAGTGCAGTTGGGCAAGCGCGGTATCTAACCCCACAT
                      ____________________________________________________________
consensus             GATGACCTTCTGTGTTGGCTGGTGAGTGCAGTTGGGCAAGCGCGGTATCTAACCCCACAT
 
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rJMSF008L12+          TGCGCGAACCCACATGATGCCGCCCTGGTTCTCCCATGTTAATGCCAAGACTGGGACTCC
rJMSF046I05+          TGCGCGAACCCACATGATGCCGCCCTGGTTCTCCCATGTTAATGCCAAGACTGGGACTCC
                      ____________________________________________________________
consensus             TGCGCGAACCCACATGATGCCGCCCTGGTTCTCCCATGTTAATGCCAAGACTGGGACTCC
 
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rJMSF008L12+          CGTGAACGCCACCGCTACAATGATGTTTGCCACTGCGGTGATTGCCTTGTTCACGAAGCT
rJMSF046I05+          CGTGAACGCCACCGCTACAATGATGTTTGCCACTGCGGTGATTGCCTTGTTCACGAAGCT
                      ____________________________________________________________
consensus             CGTGAACGCCACCGCTACAATGATGTTTGCCACTGCGGTGATTGCCTTGTTCACGAAGCT
 
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rJMSF008L12+          CGACATTCTGGCCAACCTCCTCTCCATCTCCACGCTCTTCATCTTCATGCTCGTGGCGCT
rJMSF046I05+          CGACATTCTGGCCAACCTCCTCTCCATCTCCACGCTCTTCATCTTCATGCTCGTGGCGCT
                      ____________________________________________________________
consensus             CGACATTCTGGCCAACCTCCTCTCCATCTCCACGCTCTTCATCTTCATGCTCGTGGCGCT
 
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rJMSF008L12+          TGCTCTCCTCGTGCGCCGCTACTATGTCGCTGGGGTCACTATGCCCCACGACCGCCACAA
rJMSF046I05+          TGCTCTCCTCGTGCGCCGCTACTATGTCGCTGGGGTCACTATGCCCCACGACCGCCACAA
                      ____________________________________________________________
consensus             TGCTCTCCTCGTGCGCCGCTACTATGTCGCTGGGGTCACTATGCCCCACGACCGCCACAA
 
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rJMSF008L12+          GCTCATCCTCTGCATCTTCCTCATCCTTGCGTCTTCGATAGCCACGGCTGCTTACTGGGG
rJMSF046I05+          GCTCATCCTCTGCATCTTCCTCATCCTTGCGTCTTCGATAGCCACGGCTGCTTACTGGGG
                      ____________________________________________________________
consensus             GCTCATCCTCTGCATCTTCCTCATCCTTGCGTCTTCGATAGCCACGGCTGCTTACTGGGG
 
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rJMSF008L12+          TTTGAGTGAAGACGGGTGGATTGCCTACTGTATAACGGTTCCGGTATGGTTCCTGGCAAC
rJMSF046I05+          TTTGAGTGAAGACGGGTGGATTGCCTACTGTATAACGGTTCCGGTATGGTTCCTGGCAAC
                      ____________________________________________________________
consensus             TTTGAGTGAAGACGGGTGGATTGCCTACTGTATAACGGTTCCGGTATGGTTCCTGGCAAC
 
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rJMSF008L12+          CGCGGGGCTTTATTTCTTCGTTCCTCATGCTCGCAATCCTATGCTGTGGGGGGTGCCTCT
rJMSF046I05+          CGCGGGGCTTTATTTCTTCGTTCCTCATGCTCGCAATCCTATGCTGTGGGGGGTGCCTCT
                      ____________________________________________________________
consensus             CGCGGGGCTTTATTTCTTCGTTCCTCATGCTCGCAATCCTATGCTGTGGGGGGTGCCTCT
 
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rJMSF008L12+          GGTGCCCTGGCTGCCGTCTTTGTCCATTGCCATCAACATTTTCCTCCTTGGCTCCATAGA
rJMSF046I05+          GGTGCCCTGGCTGCCGTCTTTGTCCATTGCCATCAACATTTTCCTCCTTGGCTCCATAGA
                      ____________________________________________________________
consensus             GGTGCCCTGGCTGCCGTCTTTGTCCATTGCCATCAACATTTTCCTCCTTGGCTCCATAGA
 
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rJMSF008L12+          TAAACAATCTTTCGAGAGGTTTGGTATTTGGACTGCTATTCTTCTGCTTTACTACCTCTT
rJMSF046I05+          TAAACAATCTTTCGAGAGGTTTGGTATTTGGACTGCTATTCTTCTGCTTTACTACCTCTT
                      ____________________________________________________________
consensus             TAAACAATCTTTCGAGAGGTTTGGTATTTGGACTGCTATTCTTCTGCTTTACTACCTCTT
 
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rJMSF008L12+          CTTTGGCCTTCATGCATCATATGACACTGCAAAGGAAGTAGAAAAGAATCAAGGGCTTGG
rJMSF046I05+          CTTTGGCCTTCATGCATCATATGACACTGCAAAGGAAGTAGAAAAGAATCAAGGGCTTGG
                      ____________________________________________________________
consensus             CTTTGGCCTTCATGCATCATATGACACTGCAAAGGAAGTAGAAAAGAATCAAGGGCTTGG
 
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rJMSF008L12+          GAAGATTGAGGAGGGAGATAATGCCCCTTCTGCTCCAAATTCCCCTCAAAATTAGTAGTC
rJMSF046I05+          GAAGATTGAGGAGGGAGATAATGCCCCTTCTGCTCCAAATTCCCCTCAAAATTAGTAGTC
                      ____________________________________________________________
consensus             GAAGATTGAGGAGGGAGATAATGCCCCTTCTGCTCCAAATTCCCCTCAAAATTAGTAGTC
 
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rJMSF008L12+          TGCAGCTAAATATAATCTCCAAT                                     
rJMSF046I05+          TGCAGCTAAATATAATCTCCAATTGTGCTGTCCAATCTCCACACATTGTTTCTTATATCA
                      ____________________________________________________________
consensus             TGCAGCTAAATATAATCTCCAATTGTGCTGTCCAATCTCCACACATTGTTTCTTATATCA
 
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rJMSF046I05+          AGGATTCATTATTAAAATTTCAGTTGTGTACATATTCTATATCTCAACAAAATGGGAAAG
                      ____________________________________________________________
consensus             AGGATTCATTATTAAAATTTCAGTTGTGTACATATTCTATATCTCAACAAAATGGGAAAG