Contig 011418:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004D17Sequence583010892 (2)emb|CDP05623.1|3e-101unnamed protein product [Coffea canephora]721011418 (2)ref|XP_009794088.1|6e-66PREDICTED: cationic amino acid transporter 1-like [Nicotiana sylvestris]
JMSF046G23Sequence670010892 (2)ref|XP_009612550.1|1e-105PREDICTED: cationic amino acid transporter 1-like isoform X1 [Nicotiana tomento702011418 (2)ref|XP_009794088.1|6e-52PREDICTED: cationic amino acid transporter 1-like [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF004D17+ TCATGCTCGTCGCGCT
                      ____________________________________________________________
consensus TCATGCTCGTCGCGCT
 
. : . : . : . : . : . :
rJMFF004D17+ CGCGCTCCTCGTGCGGAGATACTATGTTTCCGGGGTTACCACCGTCGGGAACCGCAATAA
                      ____________________________________________________________
consensus CGCGCTCCTCGTGCGGAGATACTATGTTTCCGGGGTTACCACCGTCGGGAACCGCAATAA
 
. : . : . : . : . : . :
rJMFF004D17+ ACTCATCGGATTCCTTCTTCTCATCCTGTCATCCTCAATCGCCACCGCTACTTACTGGGG
rJMSF046G23+ TCTCATCCTGTCATCCTCAATCGCCACCGCTACTTACTGGGG
                      ____________________________________________________________
consensus ACTCATCGGATTCCTTCTTCTCATCCTGTCATCCTCAATCGCCACCGCTACTTACTGGGG
 
. : . : . : . : . : . :
rJMFF004D17+ CGCTAGCACTAATGGGTGGGTTGCGTACTGCGTTACGGCGCCGGTGTGGTTCTTTTCCAC
rJMSF046G23+ CGCTAGCACTAATGGGTGGGTTGCGTACTGCGTTACGGCGCCGGTGTGGTTCTTTTCCAC
                      ____________________________________________________________
consensus CGCTAGCACTAATGGGTGGGTTGCGTACTGCGTTACGGCGCCGGTGTGGTTCTTTTCCAC
 
. : . : . : . : . : . :
rJMFF004D17+ GGTGGGGCTCTGCTACTTCGTTCCTCGCGCGCGCGAGCCTAGGCTTTGGGGCGTTCCGCT
rJMSF046G23+ GGTGGGGCTCTGCTACTTCGTTCCTCGCGCGCGCGAGCCGAGGCTTTTGGGCGTTCCGCT
                      ____________________________________________________________
consensus GGTGGGGCTCTGCTACTTCGTTCCTCGCGCGCGCGAGCCTAGGCTTTTGGGCGTTCCGCT
 
. : . : . : . : . : . :
rJMFF004D17+ GGTGCCGTGGCTCCCGTCTTTGTCAATCGCAGTAAACATCTTCCTCCTTGGATCAATAGA
rJMSF046G23+ GGTGCCGTGGCTCCCGTCTTTGTCAATCGCAGTAAACATCTTCCTCCTTGGATCAATAGA
                      ____________________________________________________________
consensus GGTGCCGTGGCTCCCGTCTTTGTCAATCGCAGTAAACATCTTCCTCCTTGGATCAATAGA
 
. : . : . : . : . : . :
rJMFF004D17+ CAAAAACTCTTTCAAGAGATTTGGACTGTGGAGCGGTGTTCTTCTGATATACTATTTCTT
rJMSF046G23+ CAAAAACTCTTTCAAGAGATTTGGACTGTGGAGCGGTGTTCTTCTGATATACTATTTCTT
                      ____________________________________________________________
consensus CAAAAACTCTTTCAAGAGATTTGGACTGTGGAGCGGTGTTCTTCTGATATACTATTTCTT
 
. : . : . : . : . : . :
rJMFF004D17+ CTTCGGCCTCCACGCGTCGTATGACACCGCCAAGGAGCTGGAAAAGAGCGCTGAGTGGCG
rJMSF046G23+ CTTCGGCCTCCACGCGTCGTATGACACCGCCAAGGAGCTGGAAAAGAGCGCTGAGTGGCG
                      ____________________________________________________________
consensus CTTCGGCCTCCACGCGTCGTATGACACCGCCAAGGAGCTGGAAAAGAGCGCTGAGTGGCG
 
. : . : . : . : . : . :
rJMFF004D17+ GAAGATTGAAGAGGGAAGTGTATCTGCAGCCGCTGCCGCCCCCGCGGCGGTGGCAAAGCC
rJMSF046G23+ GAAGATTGAAGAGGGAAGTGTATCTGCAGCCGCTGCCGCCCCCGCGGCGGTGGCAAAGCC
                      ____________________________________________________________
consensus GAAGATTGAAGAGGGAAGTGTATCTGCAGCCGCTGCCGCCCCCGCGGCGGTGGCAAAGCC
 
. : . : . : . : . : . :
rJMFF004D17+ GGGTTTTGATGATGTAGACGCTACCAATGGTTCCAATAATGCTTCTGGGAATTAGTATAA
rJMSF046G23+ GGGTTTTGATGATGTAGACGCTACCAATGGTTCCAATAATGCTTCTGGGAATTAGTATAA
                      ____________________________________________________________
consensus GGGTTTTGATGATGTAGACGCTACCAATGGTTCCAATAATGCTTCTGGGAATTAGTATAA
 
. : . : . : . : . : . :
rJMFF004D17+ AGTATCTATGATTTGTGTATATGTAGTGTTGTCTTCCAAGTTCCAACCCCTCCACATTTC
rJMSF046G23+ AGTATCTATGATTTGTGTATATGTAGTGTTGTCTTCCAAGTTCCAACCCCTCCACATTTC
                      ____________________________________________________________
consensus AGTATCTATGATTTGTGTATATGTAGTGTTGTCTTCCAAGTTCCAACCCCTCCACATTTC
 
. : . : . : . : . : . :
rJMFF004D17+ CCTTTTGGATTTAAGTAAAGGAGACAACTAATTAAACTGACCTTGAAGCTTAATTTCAAG
rJMSF046G23+ CCTTTTGGATTTAAGTAAAGGAGACAACTAATTAAACTGACCTTGAAGCTTAATTTCAAG
                      ____________________________________________________________
consensus CCTTTTGGATTTAAGTAAAGGAGACAACTAATTAAACTGACCTTGAAGCTTAATTTCAAG
 
. : . : . : . : . : . :
rJMFF004D17+ GATTCCGGTCTCAAGATTGTGCTAAGT
rJMSF046G23+ GATTCCGGTCTCAAGATTGTGCTAAGTTGAAATTCACAAGAGCAGACTTAGTGTCACAAG
                      ____________________________________________________________
consensus GATTCCGGTCTCAAGATTGTGCTAAGTTGAAATTCACAAGAGCAGACTTAGTGTCACAAG
 
. : . : . : . : . : . :
rJMSF046G23+ ATATGTTTTGCACCCTCTGTAGTTAGGGAGTGAAAGTCTGCTCCACTTTCTTAATTAAGG
                      ____________________________________________________________
consensus ATATGTTTTGCACCCTCTGTAGTTAGGGAGTGAAAGTCTGCTCCACTTTCTTAATTAAGG